Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:44376863-48806867

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600 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaom1 4 24322299 to 46332776 22010477 QTL autoimmune aoritis in MRL mice 1
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
Cpgi14212 4 44380555 to 44380764 209 CpG island CpG island 14212
Gm12455 4 44382922 to 44383337 415 + pseudogene predicted gene 12455
Cpgi14213 4 44392913 to 44393196 283 CpG island CpG island 14213
Gm24376 4 44412469 to 44412595 126 - snoRNA gene predicted gene, 24376
Cpgi14214 4 44425150 to 44425784 634 CpG island CpG island 14214
Tssr37026 4 44451717 to 44451720 3 + TSS region transcription start site region 37026
D4Mit213 4 44468627 to 44468759 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 213
Tssr41509 4 44525027 to 44525030 3 - TSS region transcription start site region 41509
Pax5 4 44526269 to 44710440 184171 - protein coding gene paired box 5
Tssr41510 4 44526273 to 44526285 12 - TSS region transcription start site region 41510
Tssr41511 4 44526424 to 44526436 12 - TSS region transcription start site region 41511
Tssr41512 4 44526747 to 44526749 2 - TSS region transcription start site region 41512
Cpgi14215 4 44557959 to 44558542 583 CpG island CpG island 14215
Tssr41513 4 44561510 to 44561513 3 - TSS region transcription start site region 41513
Mir5120 4 44607491 to 44607568 77 - miRNA gene microRNA 5120
Tssr41514 4 44640515 to 44640527 12 - TSS region transcription start site region 41514
Tssr41515 4 44640582 to 44640588 6 - TSS region transcription start site region 41515
Cpgi14216 4 44663661 to 44664961 1300 CpG island CpG island 14216
Tssr37027 4 44664391 to 44664417 26 + TSS region transcription start site region 37027
Gm12462 4 44664415 to 44685347 20932 + antisense lncRNA gene predicted gene 12462
Tssr37028 4 44664423 to 44664435 12 + TSS region transcription start site region 37028
Tssr37029 4 44664439 to 44664445 6 + TSS region transcription start site region 37029
4930517J16Rik 4 44669330 to 44670897 1567 + unclassified gene RIKEN cDNA 4930517J16 gene
Tssr41516 4 44683909 to 44683918 9 - TSS region transcription start site region 41516
Tssr37030 4 44701600 to 44701642 42 + TSS region transcription start site region 37030
Cpgi14217 4 44701913 to 44702495 582 CpG island CpG island 14217
5730488B01Rik 4 44702800 to 44705110 2310 + lncRNA gene RIKEN cDNA 5730488B01 gene
Cpgi14218 4 44703077 to 44704841 1764 CpG island CpG island 14218
Tssr41517 4 44704436 to 44704449 13 - TSS region transcription start site region 41517
Tssr41518 4 44704462 to 44704495 33 - TSS region transcription start site region 41518
Tssr37031 4 44705443 to 44705447 4 + TSS region transcription start site region 37031
D4Mit257 4 44709353 to 44709486 133 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 257
Tssr41519 4 44710648 to 44710672 24 - TSS region transcription start site region 41519
Tssr41520 4 44710687 to 44710721 34 - TSS region transcription start site region 41520
Cpgi14219 4 44710711 to 44711163 452 CpG island CpG island 14219
Tssr41521 4 44710761 to 44710774 13 - TSS region transcription start site region 41521
Tssr37032 4 44710914 to 44710918 4 + TSS region transcription start site region 37032
Tssr41522 4 44710963 to 44710977 14 - TSS region transcription start site region 41522
Cpgi14220 4 44711729 to 44712339 610 CpG island CpG island 14220
Cpgi14221 4 44712820 to 44713700 880 CpG island CpG island 14221
Cpgi14222 4 44714031 to 44714567 536 CpG island CpG island 14222
Tssr41523 4 44714321 to 44714352 31 - TSS region transcription start site region 41523
Gm12463 4 44752277 to 44753125 848 - pseudogene predicted gene 12463
Cpgi14223 4 44756126 to 44757155 1029 CpG island CpG island 14223
Tssr37033 4 44756553 to 44756601 48 + TSS region transcription start site region 37033
Zcchc7 4 44756557 to 44932215 175658 + protein coding gene zinc finger, CCHC domain containing 7
Tssr37034 4 44756609 to 44756682 73 + TSS region transcription start site region 37034
Tssr37035 4 44756686 to 44756697 11 + TSS region transcription start site region 37035
Tssr1161 4 44771436 to 44771446 10 + TSS region transcription start site region 1161
Tssr37036 4 44807513 to 44807530 17 + TSS region transcription start site region 37036
Tssr37037 4 44824085 to 44824089 4 + TSS region transcription start site region 37037
Gm22639 4 44865307 to 44865431 124 + miRNA gene predicted gene, 22639
Tssr37038 4 44880007 to 44880012 5 + TSS region transcription start site region 37038
Tssr37039 4 44884939 to 44884943 4 + TSS region transcription start site region 37039
A630057N01Rik 4 44915314 to 44919795 4481 unclassified gene RIKEN cDNA A630057N01 gene
Tssr37040 4 44924168 to 44924171 3 + TSS region transcription start site region 37040
Tssr37041 4 44943727 to 44943791 64 + TSS region transcription start site region 37041
Gm12678 4 44943753 to 44948330 4577 + lincRNA gene predicted gene 12678
Tssr37042 4 44953269 to 44953309 40 + TSS region transcription start site region 37042
Gm30763 4 44956562 to 44959784 3222 - lncRNA gene predicted gene, 30763
Tssr37043 4 44967765 to 44967772 7 + TSS region transcription start site region 37043
Gm12493 4 44967769 to 44971096 3327 + antisense lncRNA gene predicted gene 12493
Gm12679 4 44970576 to 44978319 7743 - antisense lncRNA gene predicted gene 12679
Cpgi14224 4 44973676 to 44973884 208 CpG island CpG island 14224
Cpgi14225 4 44981244 to 44981768 524 CpG island CpG island 14225
Tssr37044 4 44981389 to 44981461 72 + TSS region transcription start site region 37044
Grhpr 4 44981395 to 44990734 9339 + protein coding gene glyoxylate reductase/hydroxypyruvate reductase
Tssr37045 4 44981478 to 44981485 7 + TSS region transcription start site region 37045
Zbtb5 4 44991242 to 45012412 21170 - protein coding gene zinc finger and BTB domain containing 5
Cpgi14226 4 45011596 to 45013212 1616 CpG island CpG island 14226
Tssr41524 4 45011654 to 45011698 44 - TSS region transcription start site region 41524
Tssr37046 4 45011728 to 45011748 20 + TSS region transcription start site region 37046
Tssr37047 4 45011758 to 45011771 13 + TSS region transcription start site region 37047
Tssr41525 4 45011946 to 45011974 28 - TSS region transcription start site region 41525
Tssr41526 4 45012059 to 45012078 19 - TSS region transcription start site region 41526
Tssr41527 4 45012093 to 45012159 66 - TSS region transcription start site region 41527
Tssr37048 4 45012168 to 45012204 36 + TSS region transcription start site region 37048
Tssr41528 4 45012287 to 45012325 38 - TSS region transcription start site region 41528
1700055D18Rik 4 45012408 to 45014356 1948 + antisense lncRNA gene RIKEN cDNA 1700055D18 gene
Tssr37049 4 45012795 to 45012844 49 + TSS region transcription start site region 37049
Tssr37050 4 45013531 to 45013536 5 + TSS region transcription start site region 37050
Cpgi14227 4 45018493 to 45019317 824 CpG island CpG island 14227
Polr1e 4 45018609 to 45034279 15670 + protein coding gene polymerase (RNA) I polypeptide E
Tssr37051 4 45018619 to 45018675 56 + TSS region transcription start site region 37051
Fbxo10 4 45034247 to 45084604 50357 - protein coding gene F-box protein 10
Gm30939 4 45044936 to 45061986 17050 + lncRNA gene predicted gene, 30939
D4Mit5 4 45077682 to 45077816 134 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 5
Im2 4 45077682 to 45077816 134 QTL immunoregulatory 2
Cpgi14228 4 45084059 to 45085000 941 CpG island CpG island 14228
Tssr41529 4 45084538 to 45084603 65 - TSS region transcription start site region 41529
Tomm5 4 45105209 to 45108113 2904 - protein coding gene translocase of outer mitochondrial membrane 5
Cpgi14229 4 45107562 to 45108170 608 CpG island CpG island 14229
Tssr41530 4 45108069 to 45108128 59 - TSS region transcription start site region 41530
Tssr37052 4 45121573 to 45121590 17 + TSS region transcription start site region 37052
D4Mit1006 4 45127937 to 45128086 149 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 1006
Tssr37053 4 45130447 to 45130450 3 + TSS region transcription start site region 37053
Gm12566 4 45136250 to 45136608 358 - pseudogene predicted gene 12566
Cpgi14230 4 45142646 to 45142826 180 CpG island CpG island 14230
Cpgi14231 4 45184269 to 45185616 1347 CpG island CpG island 14231
Tssr37054 4 45184722 to 45184760 38 + TSS region transcription start site region 37054
Tssr37055 4 45184815 to 45184851 36 + TSS region transcription start site region 37055
Frmpd1 4 45184875 to 45285936 101061 + protein coding gene FERM and PDZ domain containing 1
Tssr37056 4 45203884 to 45203889 5 + TSS region transcription start site region 37056
Tssr37057 4 45203915 to 45203920 5 + TSS region transcription start site region 37057
Tssr37058 4 45203921 to 45203931 10 + TSS region transcription start site region 37058
D4Mit238 4 45230131 to 45230241 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 238
Frmpd1os 4 45234723 to 45243990 9267 - antisense lncRNA gene FERM and PDZ domain containing 1, opposite strand
Trmt10b 4 45297127 to 45316131 19004 + protein coding gene tRNA methyltransferase 10B
Tssr37059 4 45297150 to 45297175 25 + TSS region transcription start site region 37059
Cpgi14232 4 45297246 to 45297499 253 CpG island CpG island 14232
Exosc3 4 45316629 to 45320603 3974 - protein coding gene exosome component 3
Cpgi14233 4 45320032 to 45320865 833 CpG island CpG island 14233
Tssr41531 4 45320270 to 45320283 13 - TSS region transcription start site region 41531
Tssr37060 4 45320373 to 45320383 10 + TSS region transcription start site region 37060
Tssr41532 4 45320376 to 45320438 62 - TSS region transcription start site region 41532
Tssr37061 4 45320385 to 45320397 12 + TSS region transcription start site region 37061
Tssr37062 4 45320418 to 45320429 11 + TSS region transcription start site region 37062
Tssr41533 4 45320462 to 45320473 11 - TSS region transcription start site region 41533
Tssr41534 4 45320580 to 45320634 54 - TSS region transcription start site region 41534
Tssr37063 4 45331930 to 45331932 2 + TSS region transcription start site region 37063
Gm31017 4 45332386 to 45336787 4401 - lncRNA gene predicted gene, 31017
D4Mit138 4 45334483 to 45334611 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 138
Gm12585 4 45338745 to 45339034 289 - pseudogene predicted gene 12585
Cpgi14234 4 45341721 to 45342927 1206 CpG island CpG island 14234
Tssr37064 4 45342063 to 45342134 71 + TSS region transcription start site region 37064
Dcaf10 4 45342094 to 45379732 37638 + protein coding gene DDB1 and CUL4 associated factor 10
Tssr37065 4 45342192 to 45342242 50 + TSS region transcription start site region 37065
Tssr37066 4 45342251 to 45342281 30 + TSS region transcription start site region 37066
Tssr1162 4 45346553 to 45346581 28 - TSS region transcription start site region 1162
Tssr41535 4 45346622 to 45346657 35 - TSS region transcription start site region 41535
Slc25a51 4 45395923 to 45408766 12843 - protein coding gene solute carrier family 25, member 51
Gm25692 4 45396994 to 45397118 124 - miRNA gene predicted gene, 25692
Tssr41536 4 45397646 to 45397659 13 - TSS region transcription start site region 41536
Cpgi14235 4 45408172 to 45409363 1191 CpG island CpG island 14235
Tssr41537 4 45408721 to 45408768 47 - TSS region transcription start site region 41537
Tssr41538 4 45408878 to 45408907 29 - TSS region transcription start site region 41538
Tssr41539 4 45408908 to 45408937 29 - TSS region transcription start site region 41539
Tssr37067 4 45409108 to 45409111 3 + TSS region transcription start site region 37067
Gm46852 4 45409390 to 45423213 13823 + lncRNA gene predicted gene, 46852
Tssr41540 4 45409450 to 45409462 12 - TSS region transcription start site region 41540
Shb 4 45423276 to 45530828 107552 - protein coding gene src homology 2 domain-containing transforming protein B
Tssr41541 4 45482763 to 45482777 14 - TSS region transcription start site region 41541
Tssr41542 4 45489247 to 45489258 11 - TSS region transcription start site region 41542
Tssr41543 4 45489268 to 45489279 11 - TSS region transcription start site region 41543
Gm22518 4 45500485 to 45500552 67 - miRNA gene predicted gene, 22518
Tssr41544 4 45514118 to 45514121 3 - TSS region transcription start site region 41544
Cpgi14236 4 45529248 to 45531331 2083 CpG island CpG island 14236
Tssr41545 4 45530752 to 45530816 64 - TSS region transcription start site region 41545
Gm22055 4 45548743 to 45548849 106 + snRNA gene predicted gene, 22055
Gm12411 4 45550017 to 45550499 482 + pseudogene predicted gene 12411
Gm12408 4 45639368 to 45645497 6129 + lincRNA gene predicted gene 12408
Tssr37068 4 45640777 to 45640790 13 + TSS region transcription start site region 37068
Lch 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol
Lch2 4 45658442 to 67182171 21523729 heritable phenotypic marker low cholesterol 2
Mmtg1 4 45658442 to 83180920 37522478 QTL modifier of mammary tumor growth 1
Stheal3 4 45658442 to 45658566 124 QTL soft tissue heal 3
D4Mit214 4 45658442 to 45658566 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 214
Gm829 4 45683589 to 45723338 39749 + lincRNA gene predicted gene 829
D4Mit55 4 45709925 to 45710107 182 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 55
Synch1 4 45709925 to 45710107 182 QTL synechia 1
Gm12410 4 45715169 to 45716421 1252 + lincRNA gene predicted gene 12410
Gm31563 4 45723773 to 45740301 16528 - lncRNA gene predicted gene, 31563
Cpgi14237 4 45741103 to 45741284 181 CpG island CpG island 14237
Tssr1163 4 45741950 to 45741952 2 + TSS region transcription start site region 1163
Cpgi14238 4 45755926 to 45756096 170 CpG island CpG island 14238
Gm12409 4 45762377 to 45764223 1846 - lncRNA gene predicted gene 12409
Cpgi14239 4 45763896 to 45764236 340 CpG island CpG island 14239
Tssr41546 4 45770738 to 45770743 5 - TSS region transcription start site region 41546
Gm12412 4 45776882 to 45777209 327 - pseudogene predicted gene 12412
Tssr37069 4 45798885 to 45798925 40 + TSS region transcription start site region 37069
Cpgi14240 4 45798911 to 45799324 413 CpG island CpG island 14240
Tssr37070 4 45799016 to 45799056 40 + TSS region transcription start site region 37070
Aldh1b1 4 45799022 to 45804604 5582 + protein coding gene aldehyde dehydrogenase 1 family, member B1
Tssr37071 4 45799059 to 45799149 90 + TSS region transcription start site region 37071
Tssr37072 4 45804867 to 45804890 23 + TSS region transcription start site region 37072
Igfbpl1 4 45809507 to 45826827 17320 - protein coding gene insulin-like growth factor binding protein-like 1
Tssr41547 4 45811172 to 45811200 28 - TSS region transcription start site region 41547
Tssr41548 4 45811306 to 45811310 4 - TSS region transcription start site region 41548
Tssr41549 4 45815549 to 45815561 12 - TSS region transcription start site region 41549
Tssr41550 4 45816312 to 45816318 6 - TSS region transcription start site region 41550
Tssr37073 4 45824268 to 45824312 44 + TSS region transcription start site region 37073
Cpgi14241 4 45825893 to 45827201 1308 CpG island CpG island 14241
Tssr41551 4 45826802 to 45826813 11 - TSS region transcription start site region 41551
Tssr41552 4 45826819 to 45826834 15 - TSS region transcription start site region 41552
Tssr41553 4 45826852 to 45826863 11 - TSS region transcription start site region 41553
Tssr41554 4 45826946 to 45826962 16 - TSS region transcription start site region 41554
Tssr41555 4 45826963 to 45826974 11 - TSS region transcription start site region 41555
D4Mit269 4 45834494 to 45834715 221 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 269
Tssr37074 4 45848326 to 45848374 48 + TSS region transcription start site region 37074
Stra6l 4 45848664 to 45887008 38344 + protein coding gene STRA6-like
Tssr37075 4 45848675 to 45848696 21 + TSS region transcription start site region 37075
Tssr37076 4 45848883 to 45848910 27 + TSS region transcription start site region 37076
Tssr37077 4 45848920 to 45848950 30 + TSS region transcription start site region 37077
Tssr37078 4 45848958 to 45849016 58 + TSS region transcription start site region 37078
Tssr37079 4 45849021 to 45849037 16 + TSS region transcription start site region 37079
Cpgi14242 4 45869194 to 45869476 282 CpG island CpG island 14242
Ccdc180 4 45890303 to 45950774 60471 + protein coding gene coiled-coil domain containing 180
Tssr37080 4 45890307 to 45890340 33 + TSS region transcription start site region 37080