Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:44196717-44706720

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf38 4 44126210 to 44233643 107433 - protein coding gene ring finger protein 38
D4Mit90 4 44214545 to 44214705 160 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 90
Mir5106 4 44221195 to 44221267 72 - miRNA gene microRNA 5106
Cpgi14210 4 44232949 to 44234626 1677 CpG island CpG island 14210
Tssr41506 4 44233841 to 44233848 7 - TSS region transcription start site region 41506
Tssr41507 4 44233857 to 44233875 18 - TSS region transcription start site region 41507
Tssr41508 4 44233882 to 44233949 67 - TSS region transcription start site region 41508
Cpgi14211 4 44300824 to 44301148 324 CpG island CpG island 14211
Melk 4 44300876 to 44364675 63799 + protein coding gene maternal embryonic leucine zipper kinase
Tssr37023 4 44300903 to 44300936 33 + TSS region transcription start site region 37023
Tssr37024 4 44300940 to 44301002 62 + TSS region transcription start site region 37024
Gm12677 4 44313427 to 44314058 631 - pseudogene predicted gene 12677
Tssr1159 4 44328909 to 44328913 4 + TSS region transcription start site region 1159
Tssr37025 4 44337822 to 44337826 4 + TSS region transcription start site region 37025
Tssr1160 4 44362269 to 44362270 1 + TSS region transcription start site region 1160
Cpgi14212 4 44380555 to 44380764 209 CpG island CpG island 14212
Gm12455 4 44382922 to 44383337 415 + pseudogene predicted gene 12455
Cpgi14213 4 44392913 to 44393196 283 CpG island CpG island 14213
Gm24376 4 44412469 to 44412595 126 - snoRNA gene predicted gene, 24376
Cpgi14214 4 44425150 to 44425784 634 CpG island CpG island 14214
Tssr37026 4 44451717 to 44451720 3 + TSS region transcription start site region 37026
D4Mit213 4 44468627 to 44468759 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 213
Tssr41509 4 44525027 to 44525030 3 - TSS region transcription start site region 41509
Pax5 4 44526269 to 44710440 184171 - protein coding gene paired box 5
Tssr41510 4 44526273 to 44526285 12 - TSS region transcription start site region 41510
Tssr41511 4 44526424 to 44526436 12 - TSS region transcription start site region 41511
Tssr41512 4 44526747 to 44526749 2 - TSS region transcription start site region 41512
Cpgi14215 4 44557959 to 44558542 583 CpG island CpG island 14215
Tssr41513 4 44561510 to 44561513 3 - TSS region transcription start site region 41513
Mir5120 4 44607491 to 44607568 77 - miRNA gene microRNA 5120
Tssr41514 4 44640515 to 44640527 12 - TSS region transcription start site region 41514
Tssr41515 4 44640582 to 44640588 6 - TSS region transcription start site region 41515
Cpgi14216 4 44663661 to 44664961 1300 CpG island CpG island 14216
Tssr37027 4 44664391 to 44664417 26 + TSS region transcription start site region 37027
Gm12462 4 44664415 to 44685347 20932 + antisense lncRNA gene predicted gene 12462
Tssr37028 4 44664423 to 44664435 12 + TSS region transcription start site region 37028
Tssr37029 4 44664439 to 44664445 6 + TSS region transcription start site region 37029
4930517J16Rik 4 44669330 to 44670897 1567 + unclassified gene RIKEN cDNA 4930517J16 gene
Tssr41516 4 44683909 to 44683918 9 - TSS region transcription start site region 41516
Tssr37030 4 44701600 to 44701642 42 + TSS region transcription start site region 37030
Cpgi14217 4 44701913 to 44702495 582 CpG island CpG island 14217
5730488B01Rik 4 44702800 to 44705110 2310 + lncRNA gene RIKEN cDNA 5730488B01 gene
Cpgi14218 4 44703077 to 44704841 1764 CpG island CpG island 14218
Tssr41517 4 44704436 to 44704449 13 - TSS region transcription start site region 41517
Tssr41518 4 44704462 to 44704495 33 - TSS region transcription start site region 41518
Tssr37031 4 44705443 to 44705447 4 + TSS region transcription start site region 37031