Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:43965669-50107427

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792 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaom1 4 24322299 to 46332776 22010477 QTL autoimmune aoritis in MRL mice 1
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
Glipr2 4 43957702 to 43979118 21416 + protein coding gene GLI pathogenesis-related 2
Tssr1158 4 43966350 to 43966379 29 + TSS region transcription start site region 1158
Tssr41478 4 43972161 to 43972172 11 - TSS region transcription start site region 41478
Tssr37008 4 43972487 to 43972490 3 + TSS region transcription start site region 37008
Tssr37009 4 43977804 to 43977813 9 + TSS region transcription start site region 37009
Cpgi14203 4 43982446 to 43982623 177 CpG island CpG island 14203
Tssr37010 4 43983473 to 43983491 18 + TSS region transcription start site region 37010
Ccin 4 43983483 to 43985423 1940 + protein coding gene calicin
Tssr37011 4 43983496 to 43983523 27 + TSS region transcription start site region 37011
Cpgi14204 4 43983682 to 43985081 1399 CpG island CpG island 14204
D4Mit109 4 43991532 to 43991679 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 109
Tssr37012 4 44004438 to 44004455 17 + TSS region transcription start site region 37012
Clta 4 44004452 to 44032846 28394 + protein coding gene clathrin, light polypeptide (Lca)
Cpgi14205 4 44012369 to 44013330 961 CpG island CpG island 14205
Tssr41479 4 44012485 to 44012528 43 - TSS region transcription start site region 41479
Tssr37013 4 44012657 to 44012660 3 + TSS region transcription start site region 37013
Tssr37014 4 44012661 to 44012694 33 + TSS region transcription start site region 37014
Tssr37015 4 44012954 to 44012983 29 + TSS region transcription start site region 37015
Tssr37016 4 44018796 to 44018816 20 + TSS region transcription start site region 37016
Tssr37017 4 44019864 to 44019891 27 + TSS region transcription start site region 37017
Tssr37018 4 44019930 to 44019946 16 + TSS region transcription start site region 37018
Tssr41480 4 44025522 to 44025571 49 - TSS region transcription start site region 41480
Cpgi14206 4 44029770 to 44030007 237 CpG island CpG island 14206
Tssr37019 4 44032360 to 44032373 13 + TSS region transcription start site region 37019
Gne 4 44034075 to 44084177 50102 - protein coding gene glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
Tssr41481 4 44067044 to 44067061 17 - TSS region transcription start site region 41481
Cpgi14207 4 44072069 to 44073067 998 CpG island CpG island 14207
Tssr41482 4 44072532 to 44072557 25 - TSS region transcription start site region 41482
Tssr41483 4 44072578 to 44072693 115 - TSS region transcription start site region 41483
Tssr41484 4 44072712 to 44072731 19 - TSS region transcription start site region 41484
Tssr41485 4 44073016 to 44073021 5 - TSS region transcription start site region 41485
Gm22706 4 44081289 to 44081400 111 - snRNA gene predicted gene, 22706
Tssr41486 4 44084167 to 44084187 20 - TSS region transcription start site region 41486
Gm12503 4 44092632 to 44109311 16679 + unclassified non-coding RNA gene predicted gene 12503
Cpgi14208 4 44106408 to 44106610 202 CpG island CpG island 14208
Tssr37020 4 44106536 to 44106560 24 + TSS region transcription start site region 37020
Gm12504 4 44121893 to 44124123 2230 + pseudogene predicted pseudogene 12504
Rnf38 4 44126210 to 44233643 107433 - protein coding gene ring finger protein 38
Tssr41487 4 44126682 to 44126687 5 - TSS region transcription start site region 41487
Tssr41488 4 44129121 to 44129126 5 - TSS region transcription start site region 41488
Tssr41489 4 44143475 to 44143503 28 - TSS region transcription start site region 41489
Tssr41490 4 44149062 to 44149128 66 - TSS region transcription start site region 41490
Tssr41491 4 44152392 to 44152396 4 - TSS region transcription start site region 41491
Tssr41492 4 44153987 to 44153991 4 - TSS region transcription start site region 41492
Cpgi14209 4 44167283 to 44168665 1382 CpG island CpG island 14209
Tssr41493 4 44167393 to 44167424 31 - TSS region transcription start site region 41493
Tssr41494 4 44167429 to 44167440 11 - TSS region transcription start site region 41494
Tssr37021 4 44167447 to 44167466 19 + TSS region transcription start site region 37021
Tssr41495 4 44167580 to 44167608 28 - TSS region transcription start site region 41495
Tssr37022 4 44167581 to 44167622 41 + TSS region transcription start site region 37022
Tssr41496 4 44167618 to 44167654 36 - TSS region transcription start site region 41496
Tssr41497 4 44167769 to 44167779 10 - TSS region transcription start site region 41497
Tssr41498 4 44167888 to 44167900 12 - TSS region transcription start site region 41498
Tssr41499 4 44167905 to 44167976 71 - TSS region transcription start site region 41499
Tssr41500 4 44167988 to 44168008 20 - TSS region transcription start site region 41500
Tssr41501 4 44168017 to 44168069 52 - TSS region transcription start site region 41501
Tssr41502 4 44168267 to 44168289 22 - TSS region transcription start site region 41502
Tssr41503 4 44168356 to 44168371 15 - TSS region transcription start site region 41503
Tssr41504 4 44168481 to 44168501 20 - TSS region transcription start site region 41504
Tssr41505 4 44169257 to 44169278 21 - TSS region transcription start site region 41505
D4Mit90 4 44214545 to 44214705 160 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 90
Mir5106 4 44221195 to 44221267 72 - miRNA gene microRNA 5106
Cpgi14210 4 44232949 to 44234626 1677 CpG island CpG island 14210
Tssr41506 4 44233841 to 44233848 7 - TSS region transcription start site region 41506
Tssr41507 4 44233857 to 44233875 18 - TSS region transcription start site region 41507
Tssr41508 4 44233882 to 44233949 67 - TSS region transcription start site region 41508
Cpgi14211 4 44300824 to 44301148 324 CpG island CpG island 14211
Melk 4 44300876 to 44364675 63799 + protein coding gene maternal embryonic leucine zipper kinase
Tssr37023 4 44300903 to 44300936 33 + TSS region transcription start site region 37023
Tssr37024 4 44300940 to 44301002 62 + TSS region transcription start site region 37024
Gm12677 4 44313427 to 44314058 631 - pseudogene predicted gene 12677
Tssr1159 4 44328909 to 44328913 4 + TSS region transcription start site region 1159
Tssr37025 4 44337822 to 44337826 4 + TSS region transcription start site region 37025
Tssr1160 4 44362269 to 44362270 1 + TSS region transcription start site region 1160
Cpgi14212 4 44380555 to 44380764 209 CpG island CpG island 14212
Gm12455 4 44382922 to 44383337 415 + pseudogene predicted gene 12455
Cpgi14213 4 44392913 to 44393196 283 CpG island CpG island 14213
Gm24376 4 44412469 to 44412595 126 - snoRNA gene predicted gene, 24376
Cpgi14214 4 44425150 to 44425784 634 CpG island CpG island 14214
Tssr37026 4 44451717 to 44451720 3 + TSS region transcription start site region 37026
D4Mit213 4 44468627 to 44468759 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 213
Tssr41509 4 44525027 to 44525030 3 - TSS region transcription start site region 41509
Pax5 4 44526269 to 44710440 184171 - protein coding gene paired box 5
Tssr41510 4 44526273 to 44526285 12 - TSS region transcription start site region 41510
Tssr41511 4 44526424 to 44526436 12 - TSS region transcription start site region 41511
Tssr41512 4 44526747 to 44526749 2 - TSS region transcription start site region 41512
Cpgi14215 4 44557959 to 44558542 583 CpG island CpG island 14215
Tssr41513 4 44561510 to 44561513 3 - TSS region transcription start site region 41513
Mir5120 4 44607491 to 44607568 77 - miRNA gene microRNA 5120
Tssr41514 4 44640515 to 44640527 12 - TSS region transcription start site region 41514
Tssr41515 4 44640582 to 44640588 6 - TSS region transcription start site region 41515
Cpgi14216 4 44663661 to 44664961 1300 CpG island CpG island 14216
Tssr37027 4 44664391 to 44664417 26 + TSS region transcription start site region 37027
Gm12462 4 44664415 to 44685347 20932 + antisense lncRNA gene predicted gene 12462
Tssr37028 4 44664423 to 44664435 12 + TSS region transcription start site region 37028
Tssr37029 4 44664439 to 44664445 6 + TSS region transcription start site region 37029
4930517J16Rik 4 44669330 to 44670897 1567 + unclassified gene RIKEN cDNA 4930517J16 gene
Tssr41516 4 44683909 to 44683918 9 - TSS region transcription start site region 41516
Tssr37030 4 44701600 to 44701642 42 + TSS region transcription start site region 37030
Cpgi14217 4 44701913 to 44702495 582 CpG island CpG island 14217
5730488B01Rik 4 44702800 to 44705110 2310 + lncRNA gene RIKEN cDNA 5730488B01 gene
Cpgi14218 4 44703077 to 44704841 1764 CpG island CpG island 14218
Tssr41517 4 44704436 to 44704449 13 - TSS region transcription start site region 41517
Tssr41518 4 44704462 to 44704495 33 - TSS region transcription start site region 41518
Tssr37031 4 44705443 to 44705447 4 + TSS region transcription start site region 37031
D4Mit257 4 44709353 to 44709486 133 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 257
Tssr41519 4 44710648 to 44710672 24 - TSS region transcription start site region 41519
Tssr41520 4 44710687 to 44710721 34 - TSS region transcription start site region 41520
Cpgi14219 4 44710711 to 44711163 452 CpG island CpG island 14219
Tssr41521 4 44710761 to 44710774 13 - TSS region transcription start site region 41521
Tssr37032 4 44710914 to 44710918 4 + TSS region transcription start site region 37032
Tssr41522 4 44710963 to 44710977 14 - TSS region transcription start site region 41522
Cpgi14220 4 44711729 to 44712339 610 CpG island CpG island 14220
Cpgi14221 4 44712820 to 44713700 880 CpG island CpG island 14221
Cpgi14222 4 44714031 to 44714567 536 CpG island CpG island 14222
Tssr41523 4 44714321 to 44714352 31 - TSS region transcription start site region 41523
Gm12463 4 44752277 to 44753125 848 - pseudogene predicted gene 12463
Cpgi14223 4 44756126 to 44757155 1029 CpG island CpG island 14223
Tssr37033 4 44756553 to 44756601 48 + TSS region transcription start site region 37033
Zcchc7 4 44756557 to 44932215 175658 + protein coding gene zinc finger, CCHC domain containing 7
Tssr37034 4 44756609 to 44756682 73 + TSS region transcription start site region 37034
Tssr37035 4 44756686 to 44756697 11 + TSS region transcription start site region 37035
Tssr1161 4 44771436 to 44771446 10 + TSS region transcription start site region 1161
Tssr37036 4 44807513 to 44807530 17 + TSS region transcription start site region 37036
Tssr37037 4 44824085 to 44824089 4 + TSS region transcription start site region 37037
Gm22639 4 44865307 to 44865431 124 + miRNA gene predicted gene, 22639
Tssr37038 4 44880007 to 44880012 5 + TSS region transcription start site region 37038
Tssr37039 4 44884939 to 44884943 4 + TSS region transcription start site region 37039
A630057N01Rik 4 44915314 to 44919795 4481 unclassified gene RIKEN cDNA A630057N01 gene
Tssr37040 4 44924168 to 44924171 3 + TSS region transcription start site region 37040
Tssr37041 4 44943727 to 44943791 64 + TSS region transcription start site region 37041
Gm12678 4 44943753 to 44948330 4577 + lincRNA gene predicted gene 12678
Tssr37042 4 44953269 to 44953309 40 + TSS region transcription start site region 37042
Gm30763 4 44956562 to 44959784 3222 - lncRNA gene predicted gene, 30763
Tssr37043 4 44967765 to 44967772 7 + TSS region transcription start site region 37043
Gm12493 4 44967769 to 44971096 3327 + antisense lncRNA gene predicted gene 12493
Gm12679 4 44970576 to 44978319 7743 - antisense lncRNA gene predicted gene 12679
Cpgi14224 4 44973676 to 44973884 208 CpG island CpG island 14224
Cpgi14225 4 44981244 to 44981768 524 CpG island CpG island 14225
Tssr37044 4 44981389 to 44981461 72 + TSS region transcription start site region 37044
Grhpr 4 44981395 to 44990734 9339 + protein coding gene glyoxylate reductase/hydroxypyruvate reductase
Tssr37045 4 44981478 to 44981485 7 + TSS region transcription start site region 37045
Zbtb5 4 44991242 to 45012412 21170 - protein coding gene zinc finger and BTB domain containing 5
Cpgi14226 4 45011596 to 45013212 1616 CpG island CpG island 14226
Tssr41524 4 45011654 to 45011698 44 - TSS region transcription start site region 41524
Tssr37046 4 45011728 to 45011748 20 + TSS region transcription start site region 37046
Tssr37047 4 45011758 to 45011771 13 + TSS region transcription start site region 37047
Tssr41525 4 45011946 to 45011974 28 - TSS region transcription start site region 41525
Tssr41526 4 45012059 to 45012078 19 - TSS region transcription start site region 41526
Tssr41527 4 45012093 to 45012159 66 - TSS region transcription start site region 41527
Tssr37048 4 45012168 to 45012204 36 + TSS region transcription start site region 37048
Tssr41528 4 45012287 to 45012325 38 - TSS region transcription start site region 41528
1700055D18Rik 4 45012408 to 45014356 1948 + antisense lncRNA gene RIKEN cDNA 1700055D18 gene
Tssr37049 4 45012795 to 45012844 49 + TSS region transcription start site region 37049
Tssr37050 4 45013531 to 45013536 5 + TSS region transcription start site region 37050
Cpgi14227 4 45018493 to 45019317 824 CpG island CpG island 14227
Polr1e 4 45018609 to 45034279 15670 + protein coding gene polymerase (RNA) I polypeptide E
Tssr37051 4 45018619 to 45018675 56 + TSS region transcription start site region 37051
Fbxo10 4 45034247 to 45084604 50357 - protein coding gene F-box protein 10
Gm30939 4 45044936 to 45061986 17050 + lncRNA gene predicted gene, 30939
D4Mit5 4 45077682 to 45077816 134 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 5
Im2 4 45077682 to 45077816 134 QTL immunoregulatory 2
Cpgi14228 4 45084059 to 45085000 941 CpG island CpG island 14228
Tssr41529 4 45084538 to 45084603 65 - TSS region transcription start site region 41529
Tomm5 4 45105209 to 45108113 2904 - protein coding gene translocase of outer mitochondrial membrane 5
Cpgi14229 4 45107562 to 45108170 608 CpG island CpG island 14229
Tssr41530 4 45108069 to 45108128 59 - TSS region transcription start site region 41530
Tssr37052 4 45121573 to 45121590 17 + TSS region transcription start site region 37052
D4Mit1006 4 45127937 to 45128086 149 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 1006
Tssr37053 4 45130447 to 45130450 3 + TSS region transcription start site region 37053
Gm12566 4 45136250 to 45136608 358 - pseudogene predicted gene 12566
Cpgi14230 4 45142646 to 45142826 180 CpG island CpG island 14230
Cpgi14231 4 45184269 to 45185616 1347 CpG island CpG island 14231
Tssr37054 4 45184722 to 45184760 38 + TSS region transcription start site region 37054
Tssr37055 4 45184815 to 45184851 36 + TSS region transcription start site region 37055
Frmpd1 4 45184875 to 45285936 101061 + protein coding gene FERM and PDZ domain containing 1
Tssr37056 4 45203884 to 45203889 5 + TSS region transcription start site region 37056
Tssr37057 4 45203915 to 45203920 5 + TSS region transcription start site region 37057
Tssr37058 4 45203921 to 45203931 10 + TSS region transcription start site region 37058
D4Mit238 4 45230131 to 45230241 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 238
Frmpd1os 4 45234723 to 45243990 9267 - antisense lncRNA gene FERM and PDZ domain containing 1, opposite strand
Trmt10b 4 45297127 to 45316131 19004 + protein coding gene tRNA methyltransferase 10B
Tssr37059 4 45297150 to 45297175 25 + TSS region transcription start site region 37059
Cpgi14232 4 45297246 to 45297499 253 CpG island CpG island 14232
Exosc3 4 45316629 to 45320603 3974 - protein coding gene exosome component 3
Cpgi14233 4 45320032 to 45320865 833 CpG island CpG island 14233
Tssr41531 4 45320270 to 45320283 13 - TSS region transcription start site region 41531
Tssr37060 4 45320373 to 45320383 10 + TSS region transcription start site region 37060
Tssr41532 4 45320376 to 45320438 62 - TSS region transcription start site region 41532
Tssr37061 4 45320385 to 45320397 12 + TSS region transcription start site region 37061
Tssr37062 4 45320418 to 45320429 11 + TSS region transcription start site region 37062
Tssr41533 4 45320462 to 45320473 11 - TSS region transcription start site region 41533
Tssr41534 4 45320580 to 45320634 54 - TSS region transcription start site region 41534
Tssr37063 4 45331930 to 45331932 2 + TSS region transcription start site region 37063
Gm31017 4 45332386 to 45336787 4401 - lncRNA gene predicted gene, 31017
D4Mit138 4 45334483 to 45334611 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 138
Gm12585 4 45338745 to 45339034 289 - pseudogene predicted gene 12585
Cpgi14234 4 45341721 to 45342927 1206 CpG island CpG island 14234