Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:43518589-47888338

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670 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaom1 4 24322299 to 46332776 22010477 QTL autoimmune aoritis in MRL mice 1
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
Tpm2 4 43514711 to 43523765 9054 - protein coding gene tropomyosin 2, beta
Tssr41434 4 43518685 to 43518704 19 - TSS region transcription start site region 41434
Tssr36977 4 43519236 to 43519257 21 + TSS region transcription start site region 36977
Tssr41435 4 43519255 to 43519299 44 - TSS region transcription start site region 41435
Tssr36978 4 43519408 to 43519474 66 + TSS region transcription start site region 36978
Tssr41436 4 43519661 to 43519718 57 - TSS region transcription start site region 41436
Tssr41437 4 43520045 to 43520059 14 - TSS region transcription start site region 41437
Tssr41438 4 43522727 to 43522750 23 - TSS region transcription start site region 41438
Tssr1155 4 43522849 to 43522903 54 - TSS region transcription start site region 1155
Cpgi14194 4 43523104 to 43524663 1559 CpG island CpG island 14194
Tssr41439 4 43523455 to 43523471 16 - TSS region transcription start site region 41439
Tssr41440 4 43523674 to 43523699 25 - TSS region transcription start site region 41440
Tssr41441 4 43523746 to 43523766 20 - TSS region transcription start site region 41441
Tssr41442 4 43523767 to 43523789 22 - TSS region transcription start site region 41442
Tssr41443 4 43523836 to 43523847 11 - TSS region transcription start site region 41443
Tln1 4 43531513 to 43562583 31070 - protein coding gene talin 1
Tssr41444 4 43533244 to 43533253 9 - TSS region transcription start site region 41444
Tssr41445 4 43533294 to 43533305 11 - TSS region transcription start site region 41445
Tssr41446 4 43533354 to 43533374 20 - TSS region transcription start site region 41446
Tssr41447 4 43534327 to 43534353 26 - TSS region transcription start site region 41447
Tssr36979 4 43555624 to 43555642 18 + TSS region transcription start site region 36979
Tssr36980 4 43555673 to 43555712 39 + TSS region transcription start site region 36980
Tssr36981 4 43555909 to 43555937 28 + TSS region transcription start site region 36981
Tssr41448 4 43555916 to 43555934 18 - TSS region transcription start site region 41448
Tssr41449 4 43556265 to 43556289 24 - TSS region transcription start site region 41449
Tssr41450 4 43558110 to 43558122 12 - TSS region transcription start site region 41450
Tssr41451 4 43558137 to 43558149 12 - TSS region transcription start site region 41451
Tssr41452 4 43558161 to 43558182 21 - TSS region transcription start site region 41452
Tssr41453 4 43558386 to 43558421 35 - TSS region transcription start site region 41453
Cpgi14195 4 43561774 to 43563094 1320 CpG island CpG island 14195
Tssr41454 4 43562161 to 43562172 11 - TSS region transcription start site region 41454
Tssr41455 4 43562174 to 43562185 11 - TSS region transcription start site region 41455
Tssr41456 4 43562187 to 43562199 12 - TSS region transcription start site region 41456
Tssr41457 4 43562212 to 43562255 43 - TSS region transcription start site region 41457
Tssr41458 4 43562261 to 43562272 11 - TSS region transcription start site region 41458
Tssr41459 4 43562297 to 43562308 11 - TSS region transcription start site region 41459
Tssr41460 4 43562312 to 43562323 11 - TSS region transcription start site region 41460
Tssr41461 4 43562397 to 43562430 33 - TSS region transcription start site region 41461
Tssr41462 4 43562478 to 43562497 19 - TSS region transcription start site region 41462
Tssr41463 4 43562514 to 43562517 3 - TSS region transcription start site region 41463
Tssr36982 4 43562613 to 43562670 57 + TSS region transcription start site region 36982
Creb3 4 43562634 to 43567060 4426 + protein coding gene cAMP responsive element binding protein 3
Tssr36983 4 43562672 to 43562693 21 + TSS region transcription start site region 36983
Tssr36984 4 43562706 to 43562715 9 + TSS region transcription start site region 36984
Gba2 4 43566928 to 43578864 11936 - protein coding gene glucosidase beta 2
Gm42278 4 43568928 to 43577648 8720 + lncRNA gene predicted gene, 42278
Cpgi14196 4 43578090 to 43579287 1197 CpG island CpG island 14196
Tssr41464 4 43578531 to 43578561 30 - TSS region transcription start site region 41464
Tssr41465 4 43578569 to 43578587 18 - TSS region transcription start site region 41465
Tssr41466 4 43578651 to 43578667 16 - TSS region transcription start site region 41466
Tssr36985 4 43578709 to 43578772 63 + TSS region transcription start site region 36985
Rgp1 4 43578735 to 43587487 8752 + protein coding gene RAB6A GEF compex partner 1
Tssr41467 4 43578824 to 43578909 85 - TSS region transcription start site region 41467
Tssr36986 4 43578921 to 43578974 53 + TSS region transcription start site region 36986
Msmp 4 43583216 to 43584494 1278 - protein coding gene microseminoprotein, prostate associated
Tssr41468 4 43584386 to 43584393 7 - TSS region transcription start site region 41468
Gm12472 4 43588072 to 43608755 20683 + antisense lncRNA gene predicted gene 12472
Gm42279 4 43603210 to 43622371 19161 - lncRNA gene predicted gene, 42279
Cpgi14197 4 43630938 to 43632622 1684 CpG island CpG island 14197
Tssr36987 4 43631355 to 43631414 59 + TSS region transcription start site region 36987
Tssr36988 4 43631417 to 43631437 20 + TSS region transcription start site region 36988
Gm25262 4 43631425 to 43631557 132 + miRNA gene predicted gene, 25262
Gm12473 4 43631539 to 43641533 9994 - antisense lncRNA gene predicted gene 12473
Tssr36989 4 43631587 to 43631598 11 + TSS region transcription start site region 36989
Npr2 4 43631935 to 43651244 19309 + protein coding gene natriuretic peptide receptor 2
Ps 4 43631935 to 80851736 37219801 heritable phenotypic marker polysyndactyly
Spag8 4 43651335 to 43653594 2259 - protein coding gene sperm associated antigen 8
Tssr41469 4 43653542 to 43653557 15 - TSS region transcription start site region 41469
Tssr41470 4 43653560 to 43653583 23 - TSS region transcription start site region 41470
Hint2 4 43654227 to 43656466 2239 - protein coding gene histidine triad nucleotide binding protein 2
Tssr1156 4 43655537 to 43655540 3 + TSS region transcription start site region 1156
Cpgi14198 4 43655681 to 43656800 1119 CpG island CpG island 14198
Tssr41471 4 43656437 to 43656471 34 - TSS region transcription start site region 41471
Gm4748 4 43656895 to 43663943 7048 - pseudogene predicted gene 4748
Fam221b 4 43659622 to 43668859 9237 - protein coding gene family with sequence similarity 221, member B
Tssr41472 4 43661963 to 43662005 42 - TSS region transcription start site region 41472
Tssr41473 4 43662010 to 43662021 11 - TSS region transcription start site region 41473
Tssr36990 4 43663931 to 43663947 16 + TSS region transcription start site region 36990
Gm12481 4 43664043 to 43664339 296 + pseudogene predicted gene 12481
Tssr36991 4 43664049 to 43664058 9 + TSS region transcription start site region 36991
Tssr41474 4 43668800 to 43668831 31 - TSS region transcription start site region 41474
Tssr41475 4 43668833 to 43668863 30 - TSS region transcription start site region 41475
Cpgi14199 4 43668864 to 43669891 1027 CpG island CpG island 14199
Tmem8b 4 43668971 to 43692668 23697 + protein coding gene transmembrane protein 8B
Tssr41476 4 43669146 to 43669200 54 - TSS region transcription start site region 41476
Tssr41477 4 43669204 to 43669215 11 - TSS region transcription start site region 41477
Tssr36992 4 43669266 to 43669287 21 + TSS region transcription start site region 36992
Tssr36993 4 43669288 to 43669329 41 + TSS region transcription start site region 36993
Tssr36994 4 43669666 to 43669678 12 + TSS region transcription start site region 36994
Gm23257 4 43692686 to 43692817 131 + rRNA gene predicted gene, 23257
Olfr70 4 43695000 to 43700807 5807 - protein coding gene olfactory receptor 70
Olfr71 4 43705628 to 43706566 938 - protein coding gene olfactory receptor 71
Tssr36995 4 43727181 to 43727205 24 + TSS region transcription start site region 36995
Hrct1 4 43727198 to 43728110 912 + protein coding gene histidine rich carboxyl terminus 1
Tssr36996 4 43727206 to 43727243 37 + TSS region transcription start site region 36996
Tssr36997 4 43727245 to 43727262 17 + TSS region transcription start site region 36997
Tssr36998 4 43727276 to 43727313 37 + TSS region transcription start site region 36998
Spaar 4 43730034 to 43734534 4500 + lincRNA gene small regulatory polypeptide of amino acid response
Tssr36999 4 43730426 to 43730451 25 + TSS region transcription start site region 36999
Cpgi14200 4 43731032 to 43731219 187 CpG island CpG island 14200
2900073C16Rik 4 43748025 to 43748642 617 unclassified gene RIKEN cDNA 2900073C16 gene
A630077J23Rik 4 43751859 to 43759464 7605 + lncRNA gene RIKEN cDNA A630077J23 gene
D4Mit91 4 43760628 to 43760862 234 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 91
Sicd3 4 43760862 to 9395525 -34365337 QTL seizure-induced cell death 3
Olfr269-ps1 4 43767476 to 43767777 301 - pseudogene olfactory receptor 269, pseudogene 1
Olfr159 4 43770050 to 43771009 959 - protein coding gene olfactory receptor 159
Olfr29-ps1 4 43781365 to 43782327 962 - polymorphic pseudogene olfactory receptor 29, pseudogene 1
Tssr1157 4 43791624 to 43791635 11 + TSS region transcription start site region 1157
Gm12492 4 43798899 to 43800255 1356 - pseudogene predicted gene 12492
Olfr156 4 43820335 to 43821433 1098 - protein coding gene olfactory receptor 156
Gm30318 4 43823154 to 43830474 7320 + lncRNA gene predicted gene, 30318
Olfr157 4 43834752 to 43837643 2891 - protein coding gene olfactory receptor 157
Olfr155 4 43854292 to 43855463 1171 + protein coding gene olfactory receptor 155
Cpgi14201 4 43875038 to 43876493 1455 CpG island CpG island 14201
Tssr37000 4 43875524 to 43875558 34 + TSS region transcription start site region 37000
Reck 4 43875530 to 43944806 69276 + protein coding gene reversion-inducing-cysteine-rich protein with kazal motifs
Tssr37001 4 43875567 to 43875582 15 + TSS region transcription start site region 37001
Gm27265 4 43905078 to 43905154 76 + unclassified non-coding RNA gene predicted gene, 27265
Tssr37002 4 43937319 to 43937331 12 + TSS region transcription start site region 37002
Tssr37003 4 43937341 to 43937380 39 + TSS region transcription start site region 37003
Gm30377 4 43955718 to 43957476 1758 - lncRNA gene predicted gene, 30377
Cpgi14202 4 43957160 to 43958430 1270 CpG island CpG island 14202
Tssr37004 4 43957461 to 43957496 35 + TSS region transcription start site region 37004
Tssr37005 4 43957501 to 43957527 26 + TSS region transcription start site region 37005
Tssr37006 4 43957678 to 43957735 57 + TSS region transcription start site region 37006
Glipr2 4 43957702 to 43979118 21416 + protein coding gene GLI pathogenesis-related 2
Tssr37007 4 43965550 to 43965555 5 + TSS region transcription start site region 37007
Tssr1158 4 43966350 to 43966379 29 + TSS region transcription start site region 1158
Tssr41478 4 43972161 to 43972172 11 - TSS region transcription start site region 41478
Tssr37008 4 43972487 to 43972490 3 + TSS region transcription start site region 37008
Tssr37009 4 43977804 to 43977813 9 + TSS region transcription start site region 37009
Cpgi14203 4 43982446 to 43982623 177 CpG island CpG island 14203
Tssr37010 4 43983473 to 43983491 18 + TSS region transcription start site region 37010
Ccin 4 43983483 to 43985423 1940 + protein coding gene calicin
Tssr37011 4 43983496 to 43983523 27 + TSS region transcription start site region 37011
Cpgi14204 4 43983682 to 43985081 1399 CpG island CpG island 14204
D4Mit109 4 43991532 to 43991679 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 109
Tssr37012 4 44004438 to 44004455 17 + TSS region transcription start site region 37012
Clta 4 44004452 to 44032846 28394 + protein coding gene clathrin, light polypeptide (Lca)
Cpgi14205 4 44012369 to 44013330 961 CpG island CpG island 14205
Tssr41479 4 44012485 to 44012528 43 - TSS region transcription start site region 41479
Tssr37013 4 44012657 to 44012660 3 + TSS region transcription start site region 37013
Tssr37014 4 44012661 to 44012694 33 + TSS region transcription start site region 37014
Tssr37015 4 44012954 to 44012983 29 + TSS region transcription start site region 37015
Tssr37016 4 44018796 to 44018816 20 + TSS region transcription start site region 37016
Tssr37017 4 44019864 to 44019891 27 + TSS region transcription start site region 37017
Tssr37018 4 44019930 to 44019946 16 + TSS region transcription start site region 37018
Tssr41480 4 44025522 to 44025571 49 - TSS region transcription start site region 41480
Cpgi14206 4 44029770 to 44030007 237 CpG island CpG island 14206
Tssr37019 4 44032360 to 44032373 13 + TSS region transcription start site region 37019
Gne 4 44034075 to 44084177 50102 - protein coding gene glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
Tssr41481 4 44067044 to 44067061 17 - TSS region transcription start site region 41481
Cpgi14207 4 44072069 to 44073067 998 CpG island CpG island 14207
Tssr41482 4 44072532 to 44072557 25 - TSS region transcription start site region 41482
Tssr41483 4 44072578 to 44072693 115 - TSS region transcription start site region 41483
Tssr41484 4 44072712 to 44072731 19 - TSS region transcription start site region 41484
Tssr41485 4 44073016 to 44073021 5 - TSS region transcription start site region 41485
Gm22706 4 44081289 to 44081400 111 - snRNA gene predicted gene, 22706
Tssr41486 4 44084167 to 44084187 20 - TSS region transcription start site region 41486
Gm12503 4 44092632 to 44109311 16679 + unclassified non-coding RNA gene predicted gene 12503
Cpgi14208 4 44106408 to 44106610 202 CpG island CpG island 14208
Tssr37020 4 44106536 to 44106560 24 + TSS region transcription start site region 37020
Gm12504 4 44121893 to 44124123 2230 + pseudogene predicted pseudogene 12504
Rnf38 4 44126210 to 44233643 107433 - protein coding gene ring finger protein 38
Tssr41487 4 44126682 to 44126687 5 - TSS region transcription start site region 41487
Tssr41488 4 44129121 to 44129126 5 - TSS region transcription start site region 41488
Tssr41489 4 44143475 to 44143503 28 - TSS region transcription start site region 41489
Tssr41490 4 44149062 to 44149128 66 - TSS region transcription start site region 41490
Tssr41491 4 44152392 to 44152396 4 - TSS region transcription start site region 41491
Tssr41492 4 44153987 to 44153991 4 - TSS region transcription start site region 41492
Cpgi14209 4 44167283 to 44168665 1382 CpG island CpG island 14209
Tssr41493 4 44167393 to 44167424 31 - TSS region transcription start site region 41493
Tssr41494 4 44167429 to 44167440 11 - TSS region transcription start site region 41494
Tssr37021 4 44167447 to 44167466 19 + TSS region transcription start site region 37021
Tssr41495 4 44167580 to 44167608 28 - TSS region transcription start site region 41495
Tssr37022 4 44167581 to 44167622 41 + TSS region transcription start site region 37022
Tssr41496 4 44167618 to 44167654 36 - TSS region transcription start site region 41496
Tssr41497 4 44167769 to 44167779 10 - TSS region transcription start site region 41497
Tssr41498 4 44167888 to 44167900 12 - TSS region transcription start site region 41498
Tssr41499 4 44167905 to 44167976 71 - TSS region transcription start site region 41499
Tssr41500 4 44167988 to 44168008 20 - TSS region transcription start site region 41500
Tssr41501 4 44168017 to 44168069 52 - TSS region transcription start site region 41501
Tssr41502 4 44168267 to 44168289 22 - TSS region transcription start site region 41502
Tssr41503 4 44168356 to 44168371 15 - TSS region transcription start site region 41503
Tssr41504 4 44168481 to 44168501 20 - TSS region transcription start site region 41504
Tssr41505 4 44169257 to 44169278 21 - TSS region transcription start site region 41505
D4Mit90 4 44214545 to 44214705 160 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 90
Mir5106 4 44221195 to 44221267 72 - miRNA gene microRNA 5106
Cpgi14210 4 44232949 to 44234626 1677 CpG island CpG island 14210
Tssr41506 4 44233841 to 44233848 7 - TSS region transcription start site region 41506
Tssr41507 4 44233857 to 44233875 18 - TSS region transcription start site region 41507
Tssr41508 4 44233882 to 44233949 67 - TSS region transcription start site region 41508
Cpgi14211 4 44300824 to 44301148 324 CpG island CpG island 14211
Melk 4 44300876 to 44364675 63799 + protein coding gene maternal embryonic leucine zipper kinase
Tssr37023 4 44300903 to 44300936 33 + TSS region transcription start site region 37023
Tssr37024 4 44300940 to 44301002 62 + TSS region transcription start site region 37024
Gm12677 4 44313427 to 44314058 631 - pseudogene predicted gene 12677
Tssr1159 4 44328909 to 44328913 4 + TSS region transcription start site region 1159