Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:43443493-46594317

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606 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaom1 4 24322299 to 46332776 22010477 QTL autoimmune aoritis in MRL mice 1
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
Cpgi14189 4 43441851 to 43444145 2294 CpG island CpG island 14189
Tesk1 4 43442277 to 43448075 5798 + protein coding gene testis specific protein kinase 1
Tssr36961 4 43446005 to 43446028 23 + TSS region transcription start site region 36961
Cd72 4 43447724 to 43454741 7017 - protein coding gene CD72 antigen
Tssr36962 4 43452426 to 43452473 47 + TSS region transcription start site region 36962
Tssr41411 4 43452457 to 43452489 32 - TSS region transcription start site region 41411
Tssr41412 4 43452518 to 43452543 25 - TSS region transcription start site region 41412
Tssr41413 4 43452551 to 43452563 12 - TSS region transcription start site region 41413
Tssr41414 4 43452589 to 43452613 24 - TSS region transcription start site region 41414
Cpgi14190 4 43453367 to 43453898 531 CpG island CpG island 14190
Tssr36963 4 43453785 to 43453798 13 + TSS region transcription start site region 36963
Tssr36964 4 43453825 to 43453838 13 + TSS region transcription start site region 36964
Tssr36965 4 43454162 to 43454192 30 + TSS region transcription start site region 36965
Tssr41415 4 43454537 to 43454547 10 - TSS region transcription start site region 41415
Tssr41416 4 43454564 to 43454576 12 - TSS region transcription start site region 41416
Tssr41417 4 43454582 to 43454587 5 - TSS region transcription start site region 41417
Tssr41418 4 43454600 to 43454635 35 - TSS region transcription start site region 41418
Tssr41419 4 43454876 to 43454900 24 - TSS region transcription start site region 41419
Tssr41420 4 43454913 to 43454928 15 - TSS region transcription start site region 41420
Tssr36966 4 43466155 to 43466169 14 + TSS region transcription start site region 36966
Tssr36967 4 43473400 to 43473429 29 + TSS region transcription start site region 36967
Tssr41421 4 43478765 to 43478811 46 - TSS region transcription start site region 41421
Sit1 4 43482083 to 43483709 1626 - protein coding gene suppression inducing transmembrane adaptor 1
Tssr36968 4 43482271 to 43482288 17 + TSS region transcription start site region 36968
Tssr41422 4 43483588 to 43483598 10 - TSS region transcription start site region 41422
Tssr41423 4 43483696 to 43483730 34 - TSS region transcription start site region 41423
Cpgi14191 4 43492749 to 43493874 1125 CpG island CpG island 14191
Rmrp 4 43492785 to 43493059 274 - RNase MRP RNA gene RNA component of mitochondrial RNAase P
Tssr36969 4 43492823 to 43492841 18 + TSS region transcription start site region 36969
Tssr41424 4 43493051 to 43493065 14 - TSS region transcription start site region 41424
Ccdc107 4 43493340 to 43495921 2581 + protein coding gene coiled-coil domain containing 107
Tssr36970 4 43493345 to 43493430 85 + TSS region transcription start site region 36970
Arhgef39 4 43496142 to 43499695 3553 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 39
Cpgi14192 4 43499232 to 43499929 697 CpG island CpG island 14192
Tssr41425 4 43499617 to 43499677 60 - TSS region transcription start site region 41425
Gm12454 4 43504428 to 43508747 4319 - antisense lncRNA gene predicted gene 12454
Tssr36971 4 43506338 to 43506360 22 + TSS region transcription start site region 36971
Tssr36972 4 43507018 to 43507034 16 + TSS region transcription start site region 36972
Car9 4 43507026 to 43513729 6703 + protein coding gene carbonic anhydrase 9
Tssr36973 4 43507040 to 43507051 11 + TSS region transcription start site region 36973
Tssr36974 4 43507085 to 43507096 11 + TSS region transcription start site region 36974
Cpgi14193 4 43508568 to 43508874 306 CpG island CpG island 14193
Tssr41426 4 43508714 to 43508734 20 - TSS region transcription start site region 41426
Tssr41427 4 43508740 to 43508753 13 - TSS region transcription start site region 41427
Tssr36975 4 43508850 to 43508899 49 + TSS region transcription start site region 36975
Tpm2 4 43514711 to 43523765 9054 - protein coding gene tropomyosin 2, beta
Tssr41428 4 43515168 to 43515190 22 - TSS region transcription start site region 41428
Tssr41429 4 43515302 to 43515321 19 - TSS region transcription start site region 41429
Tssr41430 4 43515701 to 43515765 64 - TSS region transcription start site region 41430
Tssr41431 4 43515787 to 43515801 14 - TSS region transcription start site region 41431
Tssr36976 4 43518410 to 43518441 31 + TSS region transcription start site region 36976
Tssr41432 4 43518438 to 43518455 17 - TSS region transcription start site region 41432
Tssr41433 4 43518459 to 43518473 14 - TSS region transcription start site region 41433
Tssr41434 4 43518685 to 43518704 19 - TSS region transcription start site region 41434
Tssr36977 4 43519236 to 43519257 21 + TSS region transcription start site region 36977
Tssr41435 4 43519255 to 43519299 44 - TSS region transcription start site region 41435
Tssr36978 4 43519408 to 43519474 66 + TSS region transcription start site region 36978
Tssr41436 4 43519661 to 43519718 57 - TSS region transcription start site region 41436
Tssr41437 4 43520045 to 43520059 14 - TSS region transcription start site region 41437
Tssr41438 4 43522727 to 43522750 23 - TSS region transcription start site region 41438
Tssr1155 4 43522849 to 43522903 54 - TSS region transcription start site region 1155
Cpgi14194 4 43523104 to 43524663 1559 CpG island CpG island 14194
Tssr41439 4 43523455 to 43523471 16 - TSS region transcription start site region 41439
Tssr41440 4 43523674 to 43523699 25 - TSS region transcription start site region 41440
Tssr41441 4 43523746 to 43523766 20 - TSS region transcription start site region 41441
Tssr41442 4 43523767 to 43523789 22 - TSS region transcription start site region 41442
Tssr41443 4 43523836 to 43523847 11 - TSS region transcription start site region 41443
Tln1 4 43531513 to 43562583 31070 - protein coding gene talin 1
Tssr41444 4 43533244 to 43533253 9 - TSS region transcription start site region 41444
Tssr41445 4 43533294 to 43533305 11 - TSS region transcription start site region 41445
Tssr41446 4 43533354 to 43533374 20 - TSS region transcription start site region 41446
Tssr41447 4 43534327 to 43534353 26 - TSS region transcription start site region 41447
Tssr36979 4 43555624 to 43555642 18 + TSS region transcription start site region 36979
Tssr36980 4 43555673 to 43555712 39 + TSS region transcription start site region 36980
Tssr36981 4 43555909 to 43555937 28 + TSS region transcription start site region 36981
Tssr41448 4 43555916 to 43555934 18 - TSS region transcription start site region 41448
Tssr41449 4 43556265 to 43556289 24 - TSS region transcription start site region 41449
Tssr41450 4 43558110 to 43558122 12 - TSS region transcription start site region 41450
Tssr41451 4 43558137 to 43558149 12 - TSS region transcription start site region 41451
Tssr41452 4 43558161 to 43558182 21 - TSS region transcription start site region 41452
Tssr41453 4 43558386 to 43558421 35 - TSS region transcription start site region 41453
Cpgi14195 4 43561774 to 43563094 1320 CpG island CpG island 14195
Tssr41454 4 43562161 to 43562172 11 - TSS region transcription start site region 41454
Tssr41455 4 43562174 to 43562185 11 - TSS region transcription start site region 41455
Tssr41456 4 43562187 to 43562199 12 - TSS region transcription start site region 41456
Tssr41457 4 43562212 to 43562255 43 - TSS region transcription start site region 41457
Tssr41458 4 43562261 to 43562272 11 - TSS region transcription start site region 41458
Tssr41459 4 43562297 to 43562308 11 - TSS region transcription start site region 41459
Tssr41460 4 43562312 to 43562323 11 - TSS region transcription start site region 41460
Tssr41461 4 43562397 to 43562430 33 - TSS region transcription start site region 41461
Tssr41462 4 43562478 to 43562497 19 - TSS region transcription start site region 41462
Tssr41463 4 43562514 to 43562517 3 - TSS region transcription start site region 41463
Tssr36982 4 43562613 to 43562670 57 + TSS region transcription start site region 36982
Creb3 4 43562634 to 43567060 4426 + protein coding gene cAMP responsive element binding protein 3
Tssr36983 4 43562672 to 43562693 21 + TSS region transcription start site region 36983
Tssr36984 4 43562706 to 43562715 9 + TSS region transcription start site region 36984
Gba2 4 43566928 to 43578864 11936 - protein coding gene glucosidase beta 2
Gm42278 4 43568928 to 43577648 8720 + lncRNA gene predicted gene, 42278
Cpgi14196 4 43578090 to 43579287 1197 CpG island CpG island 14196
Tssr41464 4 43578531 to 43578561 30 - TSS region transcription start site region 41464
Tssr41465 4 43578569 to 43578587 18 - TSS region transcription start site region 41465
Tssr41466 4 43578651 to 43578667 16 - TSS region transcription start site region 41466
Tssr36985 4 43578709 to 43578772 63 + TSS region transcription start site region 36985
Rgp1 4 43578735 to 43587487 8752 + protein coding gene RAB6A GEF compex partner 1
Tssr41467 4 43578824 to 43578909 85 - TSS region transcription start site region 41467
Tssr36986 4 43578921 to 43578974 53 + TSS region transcription start site region 36986
Msmp 4 43583216 to 43584494 1278 - protein coding gene microseminoprotein, prostate associated
Tssr41468 4 43584386 to 43584393 7 - TSS region transcription start site region 41468
Gm12472 4 43588072 to 43608755 20683 + antisense lncRNA gene predicted gene 12472
Gm42279 4 43603210 to 43622371 19161 - lncRNA gene predicted gene, 42279
Cpgi14197 4 43630938 to 43632622 1684 CpG island CpG island 14197
Tssr36987 4 43631355 to 43631414 59 + TSS region transcription start site region 36987
Tssr36988 4 43631417 to 43631437 20 + TSS region transcription start site region 36988
Gm25262 4 43631425 to 43631557 132 + miRNA gene predicted gene, 25262
Gm12473 4 43631539 to 43641533 9994 - antisense lncRNA gene predicted gene 12473
Tssr36989 4 43631587 to 43631598 11 + TSS region transcription start site region 36989
Npr2 4 43631935 to 43651244 19309 + protein coding gene natriuretic peptide receptor 2
Ps 4 43631935 to 80851736 37219801 heritable phenotypic marker polysyndactyly
Spag8 4 43651335 to 43653594 2259 - protein coding gene sperm associated antigen 8
Tssr41469 4 43653542 to 43653557 15 - TSS region transcription start site region 41469
Tssr41470 4 43653560 to 43653583 23 - TSS region transcription start site region 41470
Hint2 4 43654227 to 43656466 2239 - protein coding gene histidine triad nucleotide binding protein 2
Tssr1156 4 43655537 to 43655540 3 + TSS region transcription start site region 1156
Cpgi14198 4 43655681 to 43656800 1119 CpG island CpG island 14198
Tssr41471 4 43656437 to 43656471 34 - TSS region transcription start site region 41471
Gm4748 4 43656895 to 43663943 7048 - pseudogene predicted gene 4748
Fam221b 4 43659622 to 43668859 9237 - protein coding gene family with sequence similarity 221, member B
Tssr41472 4 43661963 to 43662005 42 - TSS region transcription start site region 41472
Tssr41473 4 43662010 to 43662021 11 - TSS region transcription start site region 41473
Tssr36990 4 43663931 to 43663947 16 + TSS region transcription start site region 36990
Gm12481 4 43664043 to 43664339 296 + pseudogene predicted gene 12481
Tssr36991 4 43664049 to 43664058 9 + TSS region transcription start site region 36991
Tssr41474 4 43668800 to 43668831 31 - TSS region transcription start site region 41474
Tssr41475 4 43668833 to 43668863 30 - TSS region transcription start site region 41475
Cpgi14199 4 43668864 to 43669891 1027 CpG island CpG island 14199
Tmem8b 4 43668971 to 43692668 23697 + protein coding gene transmembrane protein 8B
Tssr41476 4 43669146 to 43669200 54 - TSS region transcription start site region 41476
Tssr41477 4 43669204 to 43669215 11 - TSS region transcription start site region 41477
Tssr36992 4 43669266 to 43669287 21 + TSS region transcription start site region 36992
Tssr36993 4 43669288 to 43669329 41 + TSS region transcription start site region 36993
Tssr36994 4 43669666 to 43669678 12 + TSS region transcription start site region 36994
Gm23257 4 43692686 to 43692817 131 + rRNA gene predicted gene, 23257
Olfr70 4 43695000 to 43700807 5807 - protein coding gene olfactory receptor 70
Olfr71 4 43705628 to 43706566 938 - protein coding gene olfactory receptor 71
Tssr36995 4 43727181 to 43727205 24 + TSS region transcription start site region 36995
Hrct1 4 43727198 to 43728110 912 + protein coding gene histidine rich carboxyl terminus 1
Tssr36996 4 43727206 to 43727243 37 + TSS region transcription start site region 36996
Tssr36997 4 43727245 to 43727262 17 + TSS region transcription start site region 36997
Tssr36998 4 43727276 to 43727313 37 + TSS region transcription start site region 36998
Spaar 4 43730034 to 43734534 4500 + lincRNA gene small regulatory polypeptide of amino acid response
Tssr36999 4 43730426 to 43730451 25 + TSS region transcription start site region 36999
Cpgi14200 4 43731032 to 43731219 187 CpG island CpG island 14200
2900073C16Rik 4 43748025 to 43748642 617 unclassified gene RIKEN cDNA 2900073C16 gene
A630077J23Rik 4 43751859 to 43759464 7605 + lncRNA gene RIKEN cDNA A630077J23 gene
D4Mit91 4 43760628 to 43760862 234 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 91
Sicd3 4 43760862 to 9395525 -34365337 QTL seizure-induced cell death 3
Olfr269-ps1 4 43767476 to 43767777 301 - pseudogene olfactory receptor 269, pseudogene 1
Olfr159 4 43770050 to 43771009 959 - protein coding gene olfactory receptor 159
Olfr29-ps1 4 43781365 to 43782327 962 - polymorphic pseudogene olfactory receptor 29, pseudogene 1
Tssr1157 4 43791624 to 43791635 11 + TSS region transcription start site region 1157
Gm12492 4 43798899 to 43800255 1356 - pseudogene predicted gene 12492
Olfr156 4 43820335 to 43821433 1098 - protein coding gene olfactory receptor 156
Gm30318 4 43823154 to 43830474 7320 + lncRNA gene predicted gene, 30318
Olfr157 4 43834752 to 43837643 2891 - protein coding gene olfactory receptor 157
Olfr155 4 43854292 to 43855463 1171 + protein coding gene olfactory receptor 155
Cpgi14201 4 43875038 to 43876493 1455 CpG island CpG island 14201
Tssr37000 4 43875524 to 43875558 34 + TSS region transcription start site region 37000
Reck 4 43875530 to 43944806 69276 + protein coding gene reversion-inducing-cysteine-rich protein with kazal motifs
Tssr37001 4 43875567 to 43875582 15 + TSS region transcription start site region 37001
Gm27265 4 43905078 to 43905154 76 + unclassified non-coding RNA gene predicted gene, 27265
Tssr37002 4 43937319 to 43937331 12 + TSS region transcription start site region 37002
Tssr37003 4 43937341 to 43937380 39 + TSS region transcription start site region 37003
Gm30377 4 43955718 to 43957476 1758 - lncRNA gene predicted gene, 30377
Cpgi14202 4 43957160 to 43958430 1270 CpG island CpG island 14202
Tssr37004 4 43957461 to 43957496 35 + TSS region transcription start site region 37004
Tssr37005 4 43957501 to 43957527 26 + TSS region transcription start site region 37005
Tssr37006 4 43957678 to 43957735 57 + TSS region transcription start site region 37006
Glipr2 4 43957702 to 43979118 21416 + protein coding gene GLI pathogenesis-related 2
Tssr37007 4 43965550 to 43965555 5 + TSS region transcription start site region 37007
Tssr1158 4 43966350 to 43966379 29 + TSS region transcription start site region 1158
Tssr41478 4 43972161 to 43972172 11 - TSS region transcription start site region 41478
Tssr37008 4 43972487 to 43972490 3 + TSS region transcription start site region 37008
Tssr37009 4 43977804 to 43977813 9 + TSS region transcription start site region 37009
Cpgi14203 4 43982446 to 43982623 177 CpG island CpG island 14203
Tssr37010 4 43983473 to 43983491 18 + TSS region transcription start site region 37010
Ccin 4 43983483 to 43985423 1940 + protein coding gene calicin
Tssr37011 4 43983496 to 43983523 27 + TSS region transcription start site region 37011
Cpgi14204 4 43983682 to 43985081 1399 CpG island CpG island 14204
D4Mit109 4 43991532 to 43991679 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 109
Tssr37012 4 44004438 to 44004455 17 + TSS region transcription start site region 37012
Clta 4 44004452 to 44032846 28394 + protein coding gene clathrin, light polypeptide (Lca)
Cpgi14205 4 44012369 to 44013330 961 CpG island CpG island 14205
Tssr41479 4 44012485 to 44012528 43 - TSS region transcription start site region 41479
Tssr37013 4 44012657 to 44012660 3 + TSS region transcription start site region 37013
Tssr37014 4 44012661 to 44012694 33 + TSS region transcription start site region 37014
Tssr37015 4 44012954 to 44012983 29 + TSS region transcription start site region 37015
Tssr37016 4 44018796 to 44018816 20 + TSS region transcription start site region 37016
Tssr37017 4 44019864 to 44019891 27 + TSS region transcription start site region 37017