Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:42560440-43500445

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm2163 4 42466752 to 42589938 123186 + protein coding gene predicted gene 2163
Gm10593 4 42552478 to 42587038 34560 + antisense lncRNA gene predicted gene 10593
Ccl19-ps2 4 42568087 to 42570083 1996 - pseudogene chemokine (C-C motif) ligand 19, pseudogene 2
Gm10591 4 42612195 to 42612860 665 + protein coding gene predicted gene 10591
Gm2564 4 42629756 to 42631714 1958 + protein coding gene predicted gene 2564
Ccl27b 4 42655251 to 42656005 754 + protein coding gene chemokine (C-C motif) ligand 27b
Il11ra2 4 42656355 to 42661893 5538 - protein coding gene interleukin 11 receptor, alpha chain 2
Gm42276 4 42665778 to 42668802 3024 - lncRNA gene predicted gene, 42276
Tssr1150 4 42705970 to 42705975 5 + TSS region transcription start site region 1150
Gm21158 4 42708688 to 42717688 9000 - pseudogene predicted gene, 21158
Gm21955 4 42714926 to 42719893 4967 + protein coding gene predicted gene, 21955
Gm12395 4 42736593 to 42738094 1501 + antisense lncRNA gene predicted gene 12395
Ccl19 4 42754525 to 42756518 1993 - protein coding gene chemokine (C-C motif) ligand 19
Ccl21a 4 42772860 to 42773991 1131 - protein coding gene chemokine (C-C motif) ligand 21A (serine)
Tssr1151 4 42773987 to 42773995 8 - TSS region transcription start site region 1151
Gm12394 4 42790214 to 42796764 6550 - protein coding gene predicted gene 12394
4930578G10Rik 4 42808457 to 42830364 21907 + protein coding gene RIKEN cDNA 4930578G10 gene
B230220N19Rik 4 42826531 to 42832365 5834 unclassified non-coding RNA gene RIKEN cDNA B230220N19 gene
Fam205a1 4 42848071 to 42853888 5817 - protein coding gene family with sequence similarity 205, member A1
Fam205c 4 42868004 to 42874234 6230 - protein coding gene family with sequence similarity 205, member C
Tssr41380 4 42874180 to 42874187 7 - TSS region transcription start site region 41380
Tssr41381 4 42874197 to 42874223 26 - TSS region transcription start site region 41381
Tssr41382 4 42874227 to 42874239 12 - TSS region transcription start site region 41382
Tssr1152 4 42875000 to 42875002 2 - TSS region transcription start site region 1152
Tssr1153 4 42880376 to 42880405 29 + TSS region transcription start site region 1153
Tssr36899 4 42880726 to 42880743 17 + TSS region transcription start site region 36899
Cpgi14172 4 42916594 to 42917880 1286 CpG island CpG island 14172
Tssr36900 4 42916647 to 42916712 65 + TSS region transcription start site region 36900
Phf24 4 42916660 to 42944752 28092 + protein coding gene PHD finger protein 24
Tssr36901 4 42917110 to 42917136 26 + TSS region transcription start site region 36901
Tssr36902 4 42917234 to 42917333 99 + TSS region transcription start site region 36902
Tssr36903 4 42921799 to 42921803 4 + TSS region transcription start site region 36903
Tssr36904 4 42921863 to 42921872 9 + TSS region transcription start site region 36904
Tssr36905 4 42921910 to 42921919 9 + TSS region transcription start site region 36905
Tssr36906 4 42922253 to 42922260 7 + TSS region transcription start site region 36906
Tssr36907 4 42926380 to 42926389 9 + TSS region transcription start site region 36907
Cpgi14173 4 42933624 to 42934037 413 CpG island CpG island 14173
Tssr41383 4 42949516 to 42949527 11 - TSS region transcription start site region 41383
Cpgi14174 4 42949593 to 42950668 1075 CpG island CpG island 14174
Dnajb5 4 42949827 to 42959417 9590 + protein coding gene DnaJ heat shock protein family (Hsp40) member B5
Tssr36908 4 42949861 to 42949923 62 + TSS region transcription start site region 36908
Tssr36909 4 42950369 to 42950445 76 + TSS region transcription start site region 36909
Tssr36910 4 42950451 to 42950475 24 + TSS region transcription start site region 36910
Tssr36911 4 42950481 to 42950492 11 + TSS region transcription start site region 36911
Tssr36912 4 42952772 to 42952780 8 + TSS region transcription start site region 36912
Tssr36913 4 42952794 to 42952805 11 + TSS region transcription start site region 36913
Tssr36914 4 42952808 to 42952822 14 + TSS region transcription start site region 36914
Tssr1154 4 42952825 to 42952828 3 + TSS region transcription start site region 1154
Tssr36915 4 42957422 to 42957432 10 + TSS region transcription start site region 36915
Tssr36916 4 42957458 to 42957466 8 + TSS region transcription start site region 36916
Tssr36917 4 42969945 to 42969951 6 + TSS region transcription start site region 36917
1700022I11Rik 4 42969946 to 42974325 4379 + protein coding gene RIKEN cDNA 1700022I11 gene
Tssr36918 4 42969953 to 42969965 12 + TSS region transcription start site region 36918
Vcp 4 42979964 to 43000507 20543 - protein coding gene valosin containing protein
Cpgi14175 4 42999523 to 43000771 1248 CpG island CpG island 14175
Tssr41384 4 43000451 to 43000485 34 - TSS region transcription start site region 41384
Fancg 4 43002343 to 43010506 8163 - protein coding gene Fanconi anemia, complementation group G
Tssr41385 4 43003890 to 43003893 3 - TSS region transcription start site region 41385
Tssr41386 4 43005900 to 43005906 6 - TSS region transcription start site region 41386
Cpgi14176 4 43010081 to 43010629 548 CpG island CpG island 14176
Tssr41387 4 43010226 to 43010271 45 - TSS region transcription start site region 41387
Tssr41388 4 43010499 to 43010537 38 - TSS region transcription start site region 41388
Pigo 4 43017635 to 43025819 8184 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class O
Cpgi14177 4 43020697 to 43021066 369 CpG island CpG island 14177
Cpgi14178 4 43025337 to 43025984 647 CpG island CpG island 14178
Tssr41389 4 43025765 to 43025788 23 - TSS region transcription start site region 41389
Tssr41390 4 43025792 to 43025832 40 - TSS region transcription start site region 41390
Stoml2 4 43027690 to 43031384 3694 - protein coding gene stomatin (Epb7.2)-like 2
Tssr41391 4 43030440 to 43030445 5 - TSS region transcription start site region 41391
Cpgi14179 4 43030794 to 43031670 876 CpG island CpG island 14179
Gm26643 4 43030999 to 43032482 1483 + lincRNA gene predicted gene, 26643
Tssr41392 4 43031377 to 43031427 50 - TSS region transcription start site region 41392
Tssr41393 4 43031429 to 43031434 5 - TSS region transcription start site region 41393
Fam214b 4 43032414 to 43046220 13806 - protein coding gene family with sequence similarity 214, member B
Tssr41394 4 43038653 to 43038656 3 - TSS region transcription start site region 41394
Cpgi14180 4 43039901 to 43040565 664 CpG island CpG island 14180
Tssr41395 4 43040151 to 43040173 22 - TSS region transcription start site region 41395
Tssr41396 4 43040248 to 43040272 24 - TSS region transcription start site region 41396
Tssr41397 4 43040279 to 43040319 40 - TSS region transcription start site region 41397
Cpgi14181 4 43045559 to 43046275 716 CpG island CpG island 14181
Tssr41398 4 43045686 to 43045747 61 - TSS region transcription start site region 41398
Tssr36919 4 43046014 to 43046043 29 + TSS region transcription start site region 36919
Tssr41399 4 43046136 to 43046154 18 - TSS region transcription start site region 41399
Gm26881 4 43046155 to 43053256 7101 + antisense lncRNA gene predicted gene, 26881
Tssr41400 4 43046162 to 43046173 11 - TSS region transcription start site region 41400
Tssr41401 4 43046174 to 43046188 14 - TSS region transcription start site region 41401
Tssr41402 4 43046196 to 43046216 20 - TSS region transcription start site region 41402
Tssr36920 4 43046291 to 43046315 24 + TSS region transcription start site region 36920
Cpgi14182 4 43058713 to 43059648 935 CpG island CpG island 14182
Tssr36921 4 43058939 to 43058962 23 + TSS region transcription start site region 36921
Unc13b 4 43058953 to 43264871 205918 + protein coding gene unc-13 homolog B
Tssr36922 4 43058976 to 43059011 35 + TSS region transcription start site region 36922
Tssr36923 4 43059028 to 43059045 17 + TSS region transcription start site region 36923
Tssr36924 4 43135814 to 43135818 4 + TSS region transcription start site region 36924
Gm23709 4 43136499 to 43136628 129 - snoRNA gene predicted gene, 23709
D4Mit182 4 43161464 to 43161598 134 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 182
D4Mit286 4 43196900 to 43196995 95 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 286
D4Dcr36 4 43200527 to 43200627 100 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 36
Gm25010 4 43201149 to 43201213 64 - snRNA gene predicted gene, 25010
Tssr36925 4 43209224 to 43209275 51 + TSS region transcription start site region 36925
Tssr36926 4 43209286 to 43209309 23 + TSS region transcription start site region 36926
Tssr36927 4 43249443 to 43249500 57 + TSS region transcription start site region 36927
Tssr36928 4 43249574 to 43249600 26 + TSS region transcription start site region 36928
Tssr36929 4 43257768 to 43257777 9 + TSS region transcription start site region 36929
Tssr36930 4 43257861 to 43257875 14 + TSS region transcription start site region 36930
Tssr36931 4 43264249 to 43264256 7 + TSS region transcription start site region 36931
Cpgi14183 4 43267007 to 43267296 289 CpG island CpG island 14183
Atp8b5 4 43267159 to 43373833 106674 + protein coding gene ATPase, class I, type 8B, member 5
Tssr36932 4 43267165 to 43267204 39 + TSS region transcription start site region 36932
Gm46851 4 43336259 to 43340163 3904 - lncRNA gene predicted gene, 46851
Tssr41403 4 43340132 to 43340137 5 - TSS region transcription start site region 41403
Gm46850 4 43360355 to 43381907 21552 - lncRNA gene predicted gene, 46850
Cpgi14184 4 43381424 to 43382705 1281 CpG island CpG island 14184
Rusc2 4 43381979 to 43427088 45109 + protein coding gene RUN and SH3 domain containing 2
Tssr36933 4 43382034 to 43382084 50 + TSS region transcription start site region 36933
Tssr36934 4 43382094 to 43382138 44 + TSS region transcription start site region 36934
Tssr36935 4 43383117 to 43383121 4 + TSS region transcription start site region 36935
Tssr41404 4 43383315 to 43383338 23 - TSS region transcription start site region 41404
Tssr36936 4 43383417 to 43383428 11 + TSS region transcription start site region 36936
Tssr36937 4 43383451 to 43383515 64 + TSS region transcription start site region 36937
Tssr36938 4 43383518 to 43383528 10 + TSS region transcription start site region 36938
Tssr41405 4 43384149 to 43384160 11 - TSS region transcription start site region 41405
Tssr36939 4 43384240 to 43384249 9 + TSS region transcription start site region 36939
Tssr36940 4 43384273 to 43384286 13 + TSS region transcription start site region 36940
Tssr36941 4 43384338 to 43384350 12 + TSS region transcription start site region 36941
Tssr36942 4 43392103 to 43392110 7 + TSS region transcription start site region 36942
Tssr36943 4 43394953 to 43394958 5 + TSS region transcription start site region 36943
Tssr41406 4 43399769 to 43399799 30 - TSS region transcription start site region 41406
Tssr36944 4 43401232 to 43401293 61 + TSS region transcription start site region 36944
Tssr41407 4 43406018 to 43406053 35 - TSS region transcription start site region 41407
Tssr36945 4 43406266 to 43406277 11 + TSS region transcription start site region 36945
Cpgi14185 4 43406421 to 43406708 287 CpG island CpG island 14185
Tssr36946 4 43406490 to 43406615 125 + TSS region transcription start site region 36946
Tssr36947 4 43414721 to 43414733 12 + TSS region transcription start site region 36947
Tssr36948 4 43416149 to 43416174 25 + TSS region transcription start site region 36948
Cpgi14186 4 43421514 to 43421779 265 CpG island CpG island 14186
Cpgi14187 4 43425745 to 43426002 257 CpG island CpG island 14187
Fam166b 4 43427019 to 43429134 2115 - protein coding gene family with sequence similarity 166, member B
Cpgi14188 4 43427465 to 43427746 281 CpG island CpG island 14188
Tssr41408 4 43429071 to 43429088 17 - TSS region transcription start site region 41408
Tssr41409 4 43429128 to 43429139 11 - TSS region transcription start site region 41409
Cpgi14189 4 43441851 to 43444145 2294 CpG island CpG island 14189
Tssr36949 4 43442236 to 43442315 79 + TSS region transcription start site region 36949
Tesk1 4 43442277 to 43448075 5798 + protein coding gene testis specific protein kinase 1
Tssr36950 4 43442320 to 43442339 19 + TSS region transcription start site region 36950
Tssr36951 4 43442360 to 43442369 9 + TSS region transcription start site region 36951
Tssr36952 4 43442402 to 43442411 9 + TSS region transcription start site region 36952
Tssr36953 4 43442468 to 43442483 15 + TSS region transcription start site region 36953
Tssr36954 4 43442484 to 43442501 17 + TSS region transcription start site region 36954
Tssr36955 4 43442514 to 43442527 13 + TSS region transcription start site region 36955
Tssr36956 4 43442560 to 43442567 7 + TSS region transcription start site region 36956
Tssr41410 4 43442958 to 43442973 15 - TSS region transcription start site region 41410
Tssr36957 4 43443079 to 43443090 11 + TSS region transcription start site region 36957
Tssr36958 4 43443102 to 43443130 28 + TSS region transcription start site region 36958
Tssr36959 4 43443135 to 43443156 21 + TSS region transcription start site region 36959
Tssr36960 4 43443157 to 43443169 12 + TSS region transcription start site region 36960
Tssr36961 4 43446005 to 43446028 23 + TSS region transcription start site region 36961
Cd72 4 43447724 to 43454741 7017 - protein coding gene CD72 antigen
Tssr36962 4 43452426 to 43452473 47 + TSS region transcription start site region 36962
Tssr41411 4 43452457 to 43452489 32 - TSS region transcription start site region 41411
Tssr41412 4 43452518 to 43452543 25 - TSS region transcription start site region 41412
Tssr41413 4 43452551 to 43452563 12 - TSS region transcription start site region 41413
Tssr41414 4 43452589 to 43452613 24 - TSS region transcription start site region 41414
Cpgi14190 4 43453367 to 43453898 531 CpG island CpG island 14190
Tssr36963 4 43453785 to 43453798 13 + TSS region transcription start site region 36963
Tssr36964 4 43453825 to 43453838 13 + TSS region transcription start site region 36964
Tssr36965 4 43454162 to 43454192 30 + TSS region transcription start site region 36965
Tssr41415 4 43454537 to 43454547 10 - TSS region transcription start site region 41415
Tssr41416 4 43454564 to 43454576 12 - TSS region transcription start site region 41416
Tssr41417 4 43454582 to 43454587 5 - TSS region transcription start site region 41417
Tssr41418 4 43454600 to 43454635 35 - TSS region transcription start site region 41418
Tssr41419 4 43454876 to 43454900 24 - TSS region transcription start site region 41419
Tssr41420 4 43454913 to 43454928 15 - TSS region transcription start site region 41420
Tssr36966 4 43466155 to 43466169 14 + TSS region transcription start site region 36966
Tssr36967 4 43473400 to 43473429 29 + TSS region transcription start site region 36967
Tssr41421 4 43478765 to 43478811 46 - TSS region transcription start site region 41421
Sit1 4 43482083 to 43483709 1626 - protein coding gene suppression inducing transmembrane adaptor 1
Tssr36968 4 43482271 to 43482288 17 + TSS region transcription start site region 36968
Tssr41422 4 43483588 to 43483598 10 - TSS region transcription start site region 41422
Tssr41423 4 43483696 to 43483730 34 - TSS region transcription start site region 41423
Cpgi14191 4 43492749 to 43493874 1125 CpG island CpG island 14191
Rmrp 4 43492785 to 43493059 274 - RNase MRP RNA gene RNA component of mitochondrial RNAase P
Tssr36969 4 43492823 to 43492841 18 + TSS region transcription start site region 36969
Tssr41424 4 43493051 to 43493065 14 - TSS region transcription start site region 41424
Ccdc107 4 43493340 to 43495921 2581 + protein coding gene coiled-coil domain containing 107
Tssr36970 4 43493345 to 43493430 85 + TSS region transcription start site region 36970
Arhgef39 4 43496142 to 43499695 3553 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 39
Cpgi14192 4 43499232 to 43499929 697 CpG island CpG island 14192
Tssr41425 4 43499617 to 43499677 60 - TSS region transcription start site region 41425