Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:42242478-42897038

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm10600 4 42240639 to 42242685 2046 + protein coding gene predicted gene 10600
Gm10599 4 42244297 to 42244748 451 + pseudogene predicted pseudogene 10599
Tssr164683 4 42255690 to 42255697 7 + TSS region transcription start site region 164683
Ccl21b 4 42255767 to 42256432 665 + protein coding gene chemokine (C-C motif) ligand 21B (leucine)
Gm21980 4 42293436 to 42293841 405 - lincRNA gene predicted gene 21980
Gm21953 4 42294267 to 42294855 588 + protein coding gene predicted gene, 21953
Fam205a3 4 42318334 to 42323929 5595 + protein coding gene family with sequence similarity 205, member A3
Gm46857 4 42373478 to 42379575 6097 - pseudogene predicted gene, 46857
Gm46892 4 42373478 to 42386157 12679 - pseudogene predicted gene, 46892
Gm21586 4 42439378 to 42439966 588 + protein coding gene predicted gene, 21586
Gm3883 4 42456965 to 42461867 4902 + pseudogene predicted gene 3883
Gm2163 4 42466752 to 42589938 123186 + protein coding gene predicted gene 2163
Fam205a2 4 42522580 to 42528175 5595 - protein coding gene family with sequence similarity 205, member A2
Gm10593 4 42552478 to 42587038 34560 + antisense lncRNA gene predicted gene 10593
Ccl19-ps2 4 42568087 to 42570083 1996 - pseudogene chemokine (C-C motif) ligand 19, pseudogene 2
Gm10591 4 42612195 to 42612860 665 + protein coding gene predicted gene 10591
Gm2564 4 42629756 to 42631714 1958 + protein coding gene predicted gene 2564
Ccl27b 4 42655251 to 42656005 754 + protein coding gene chemokine (C-C motif) ligand 27b
Il11ra2 4 42656355 to 42661893 5538 - protein coding gene interleukin 11 receptor, alpha chain 2
Gm42276 4 42665778 to 42668802 3024 - lncRNA gene predicted gene, 42276
Tssr1150 4 42705970 to 42705975 5 + TSS region transcription start site region 1150
Gm21158 4 42708688 to 42717688 9000 - pseudogene predicted gene, 21158
Gm21955 4 42714926 to 42719893 4967 + protein coding gene predicted gene, 21955
Gm12395 4 42736593 to 42738094 1501 + antisense lncRNA gene predicted gene 12395
Ccl19 4 42754525 to 42756518 1993 - protein coding gene chemokine (C-C motif) ligand 19
Ccl21a 4 42772860 to 42773991 1131 - protein coding gene chemokine (C-C motif) ligand 21A (serine)
Tssr1151 4 42773987 to 42773995 8 - TSS region transcription start site region 1151
Gm12394 4 42790214 to 42796764 6550 - protein coding gene predicted gene 12394
4930578G10Rik 4 42808457 to 42830364 21907 + protein coding gene RIKEN cDNA 4930578G10 gene
B230220N19Rik 4 42826531 to 42832365 5834 unclassified non-coding RNA gene RIKEN cDNA B230220N19 gene
Fam205a1 4 42848071 to 42853888 5817 - protein coding gene family with sequence similarity 205, member A1
Fam205c 4 42868004 to 42874234 6230 - protein coding gene family with sequence similarity 205, member C
Tssr41380 4 42874180 to 42874187 7 - TSS region transcription start site region 41380
Tssr41381 4 42874197 to 42874223 26 - TSS region transcription start site region 41381
Tssr41382 4 42874227 to 42874239 12 - TSS region transcription start site region 41382
Tssr1152 4 42875000 to 42875002 2 - TSS region transcription start site region 1152
Tssr1153 4 42880376 to 42880405 29 + TSS region transcription start site region 1153
Tssr36899 4 42880726 to 42880743 17 + TSS region transcription start site region 36899