Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:41601855-42831880

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnaic1 4 41569775 to 41638158 68383 + protein coding gene dynein, axonemal, intermediate chain 1
Tssr36877 4 41629970 to 41629977 7 + TSS region transcription start site region 36877
Tssr36878 4 41630562 to 41630579 17 + TSS region transcription start site region 36878
Tssr36879 4 41630594 to 41630607 13 + TSS region transcription start site region 36879
Tssr36880 4 41631660 to 41631672 12 + TSS region transcription start site region 36880
Tssr1149 4 41631688 to 41631703 15 + TSS region transcription start site region 1149
Tssr36881 4 41631713 to 41631724 11 + TSS region transcription start site region 36881
Tssr36882 4 41633286 to 41633297 11 + TSS region transcription start site region 36882
Tssr36883 4 41634851 to 41634899 48 + TSS region transcription start site region 36883
Enho 4 41638144 to 41640302 2158 - protein coding gene energy homeostasis associated
Tssr36884 4 41639358 to 41639405 47 + TSS region transcription start site region 36884
Gm12406 4 41639378 to 41641416 2038 + antisense lncRNA gene predicted gene 12406
Cpgi14161 4 41639501 to 41640784 1283 CpG island CpG island 14161
Tssr41357 4 41639969 to 41639983 14 - TSS region transcription start site region 41357
Tssr41358 4 41640100 to 41640137 37 - TSS region transcription start site region 41358
Tssr41359 4 41640178 to 41640233 55 - TSS region transcription start site region 41359
Tssr41360 4 41640242 to 41640273 31 - TSS region transcription start site region 41360
Tssr41361 4 41640296 to 41640312 16 - TSS region transcription start site region 41361
Tssr41362 4 41640322 to 41640344 22 - TSS region transcription start site region 41362
Tssr41363 4 41640353 to 41640364 11 - TSS region transcription start site region 41363
Tssr41364 4 41640365 to 41640376 11 - TSS region transcription start site region 41364
Tssr41365 4 41640382 to 41640402 20 - TSS region transcription start site region 41365
Gm12405 4 41642185 to 41643077 892 + antisense lncRNA gene predicted gene 12405
Cntfr 4 41657498 to 41697089 39591 - protein coding gene ciliary neurotrophic factor receptor
Tssr41366 4 41681083 to 41681086 3 - TSS region transcription start site region 41366
Cpgi14162 4 41682959 to 41683166 207 CpG island CpG island 14162
Cpgi14163 4 41683521 to 41683701 180 CpG island CpG island 14163
Rpp25l 4 41712033 to 41713534 1501 - protein coding gene ribonuclease P/MRP 25 subunit-like
Cpgi14164 4 41713060 to 41714035 975 CpG island CpG island 14164
Tssr41367 4 41713491 to 41713527 36 - TSS region transcription start site region 41367
Dctn3 4 41714798 to 41723163 8365 - protein coding gene dynactin 3
Cpgi14165 4 41722921 to 41723342 421 CpG island CpG island 14165
Tssr41368 4 41723129 to 41723179 50 - TSS region transcription start site region 41368
Arid3c 4 41723836 to 41731142 7306 - protein coding gene AT rich interactive domain 3C (BRIGHT-like)
Cpgi14166 4 41725768 to 41726254 486 CpG island CpG island 14166
Cpgi14167 4 41730951 to 41731692 741 CpG island CpG island 14167
Tssr41369 4 41731224 to 41731263 39 - TSS region transcription start site region 41369
Sigmar1 4 41738493 to 41755257 16764 - protein coding gene sigma non-opioid intracellular receptor 1
Tssr41370 4 41739487 to 41739505 18 - TSS region transcription start site region 41370
Cpgi14168 4 41740560 to 41741567 1007 CpG island CpG island 14168
Tssr41371 4 41740840 to 41740864 24 - TSS region transcription start site region 41371
Tssr41372 4 41740874 to 41740896 22 - TSS region transcription start site region 41372
Tssr41373 4 41740936 to 41740964 28 - TSS region transcription start site region 41373
Tssr41374 4 41740975 to 41741002 27 - TSS region transcription start site region 41374
Tssr41375 4 41741014 to 41741053 39 - TSS region transcription start site region 41375
Tssr41376 4 41741278 to 41741300 22 - TSS region transcription start site region 41376
Tssr41377 4 41741301 to 41741346 45 - TSS region transcription start site region 41377
Tssr41378 4 41745100 to 41745113 13 - TSS region transcription start site region 41378
D4Mit1004 4 41745683 to 41745802 119 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 1004
Cpgi14169 4 41755168 to 41756197 1029 CpG island CpG island 14169
Tssr36885 4 41755210 to 41755267 57 + TSS region transcription start site region 36885
Galt 4 41755228 to 41758695 3467 + protein coding gene galactose-1-phosphate uridyl transferase
Tssr36886 4 41755306 to 41755318 12 + TSS region transcription start site region 36886
Tssr36887 4 41755487 to 41755498 11 + TSS region transcription start site region 36887
Tssr36888 4 41755509 to 41755531 22 + TSS region transcription start site region 36888
Tssr36889 4 41755532 to 41755565 33 + TSS region transcription start site region 36889
Tssr36890 4 41755567 to 41755583 16 + TSS region transcription start site region 36890
Tssr36891 4 41755589 to 41755608 19 + TSS region transcription start site region 36891
Tssr36892 4 41755811 to 41755852 41 + TSS region transcription start site region 36892
Tssr36893 4 41756222 to 41756293 71 + TSS region transcription start site region 36893
Cpgi14170 4 41760426 to 41760673 247 CpG island CpG island 14170
Il11ra1 4 41760443 to 41769473 9030 + protein coding gene interleukin 11 receptor, alpha chain 1
Tssr36894 4 41760461 to 41760490 29 + TSS region transcription start site region 36894
Tssr36895 4 41760491 to 41760520 29 + TSS region transcription start site region 36895
Tssr36896 4 41762335 to 41762351 16 + TSS region transcription start site region 36896
Tssr36897 4 41762355 to 41762373 18 + TSS region transcription start site region 36897
Ccl27a 4 41769467 to 41774200 4733 - protein coding gene chemokine (C-C motif) ligand 27A
Tssr36898 4 41773698 to 41773708 10 + TSS region transcription start site region 36898
Tssr41379 4 41774164 to 41774176 12 - TSS region transcription start site region 41379
Gm12407 4 41791989 to 41793601 1612 - pseudogene predicted gene 12407
Gm10601 4 41809083 to 41810504 1421 + pseudogene predicted pseudogene 10601
Gm42275 4 41813109 to 41813803 694 + pseudogene predicted gene, 42275
Gm30036 4 41830954 to 41832737 1783 - lncRNA gene predicted gene, 30036
Gm21075 4 41865242 to 41887262 22020 + pseudogene predicted gene, 21075
Gm29801 4 41887928 to 41890290 2362 + protein coding gene predicted gene, 29801
Gm29804 4 41889832 to 41893163 3331 + protein coding gene predicted gene, 29804
Gm13307 4 41893278 to 41942092 48814 - antisense lncRNA gene predicted gene 13307
Gm13302 4 41893388 to 41895236 1848 + pseudogene predicted gene 13302
Gm21541 4 41903613 to 41904743 1130 + protein coding gene predicted gene, 21541
Ccl19-ps1 4 41921405 to 41923020 1615 + pseudogene chemokine (C-C motif) ligand 19, pseudogene 1
Gm20878 4 41941604 to 41942633 1029 + protein coding gene predicted gene, 20878
Cpgi14171 4 41941956 to 41942350 394 CpG island CpG island 14171
Fam205a4 4 41966058 to 41971856 5798 + protein coding gene family with sequence similarity 205, member A4
Gm36562 4 41989486 to 41992392 2906 - lncRNA gene predicted gene, 36562
Gm13303 4 42025429 to 42026712 1283 - pseudogene predicted gene 13303
Gm21093 4 42033017 to 42034726 1709 - pseudogene predicted gene, 21093
Gm37530 4 42034581 to 42039512 4931 + unclassified gene predicted gene, 37530
Gm3892 4 42055152 to 42089708 34556 + antisense lncRNA gene predicted gene 3892
Gm21104 4 42070757 to 42072707 1950 - protein coding gene predicted gene, 21104
Gm3893 4 42091207 to 42092287 1080 + unclassified gene predicted gene 3893
Gm13304 4 42114817 to 42115917 1100 + protein coding gene predicted gene 13304
Gm13299 4 42121613 to 42153435 31822 - antisense lncRNA gene predicted gene 13299
Gm2457 4 42132418 to 42134376 1958 + protein coding gene predicted gene, 2457
Ccl19-ps3 4 42132559 to 42134171 1612 + pseudogene chemokine (C-C motif) ligand 19, pseudogene 3
Gm13306 4 42153445 to 42158846 5401 + protein coding gene predicted gene 13306
Gm13305 4 42158842 to 42168603 9761 - protein coding gene predicted gene 13305
1700045I11Rik 4 42170845 to 42171337 492 + unclassified gene RIKEN cDNA 1700045I11 gene
Gm17167 4 42206998 to 42235313 28315 + unclassified non-coding RNA gene predicted gene 17167
Tssr164682 4 42216855 to 42216880 25 + TSS region transcription start site region 164682
Gm13301 4 42216908 to 42235604 18696 + pseudogene predicted gene 13301
Gm5859 4 42236859 to 42239182 2323 + pseudogene predicted pseudogene 5859
Gm17081 4 42239725 to 42240202 477 + pseudogene predicted gene 17081
Gm10600 4 42240639 to 42242685 2046 + protein coding gene predicted gene 10600
Gm10599 4 42244297 to 42244748 451 + pseudogene predicted pseudogene 10599
Tssr164683 4 42255690 to 42255697 7 + TSS region transcription start site region 164683
Ccl21b 4 42255767 to 42256432 665 + protein coding gene chemokine (C-C motif) ligand 21B (leucine)
Gm21980 4 42293436 to 42293841 405 - lincRNA gene predicted gene 21980
Gm21953 4 42294267 to 42294855 588 + protein coding gene predicted gene, 21953
Fam205a3 4 42318334 to 42323929 5595 + protein coding gene family with sequence similarity 205, member A3
Gm46857 4 42373478 to 42379575 6097 - pseudogene predicted gene, 46857
Gm46892 4 42373478 to 42386157 12679 - pseudogene predicted gene, 46892
Gm21586 4 42439378 to 42439966 588 + protein coding gene predicted gene, 21586
Gm3883 4 42456965 to 42461867 4902 + pseudogene predicted gene 3883
Gm2163 4 42466752 to 42589938 123186 + protein coding gene predicted gene 2163
Fam205a2 4 42522580 to 42528175 5595 - protein coding gene family with sequence similarity 205, member A2
Gm10593 4 42552478 to 42587038 34560 + antisense lncRNA gene predicted gene 10593
Ccl19-ps2 4 42568087 to 42570083 1996 - pseudogene chemokine (C-C motif) ligand 19, pseudogene 2
Gm10591 4 42612195 to 42612860 665 + protein coding gene predicted gene 10591
Gm2564 4 42629756 to 42631714 1958 + protein coding gene predicted gene 2564
Ccl27b 4 42655251 to 42656005 754 + protein coding gene chemokine (C-C motif) ligand 27b
Il11ra2 4 42656355 to 42661893 5538 - protein coding gene interleukin 11 receptor, alpha chain 2
Gm42276 4 42665778 to 42668802 3024 - lncRNA gene predicted gene, 42276
Tssr1150 4 42705970 to 42705975 5 + TSS region transcription start site region 1150
Gm21158 4 42708688 to 42717688 9000 - pseudogene predicted gene, 21158
Gm21955 4 42714926 to 42719893 4967 + protein coding gene predicted gene, 21955
Gm12395 4 42736593 to 42738094 1501 + antisense lncRNA gene predicted gene 12395
Ccl19 4 42754525 to 42756518 1993 - protein coding gene chemokine (C-C motif) ligand 19
Ccl21a 4 42772860 to 42773991 1131 - protein coding gene chemokine (C-C motif) ligand 21A (serine)
Tssr1151 4 42773987 to 42773995 8 - TSS region transcription start site region 1151
Gm12394 4 42790214 to 42796764 6550 - protein coding gene predicted gene 12394
4930578G10Rik 4 42808457 to 42830364 21907 + protein coding gene RIKEN cDNA 4930578G10 gene
B230220N19Rik 4 42826531 to 42832365 5834 unclassified non-coding RNA gene RIKEN cDNA B230220N19 gene