Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:41516660-41746672

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1110017D15Rik 4 41505009 to 41517333 12324 - protein coding gene RIKEN cDNA 1110017D15 gene
Tssr41346 4 41517280 to 41517292 12 - TSS region transcription start site region 41346
Tssr41347 4 41517301 to 41517323 22 - TSS region transcription start site region 41347
Tssr41348 4 41517326 to 41517337 11 - TSS region transcription start site region 41348
Tssr36872 4 41517407 to 41517416 9 + TSS region transcription start site region 36872
Tssr36873 4 41517423 to 41517436 13 + TSS region transcription start site region 36873
Fam219aos 4 41517437 to 41518929 1492 + antisense lncRNA gene family with sequence similarity 219, member A, opposite strand
Tssr36874 4 41517438 to 41517447 9 + TSS region transcription start site region 36874
Fam219a 4 41517691 to 41569533 51842 - protein coding gene family with sequence similarity 219, member A
Tssr41349 4 41520305 to 41520325 20 - TSS region transcription start site region 41349
Gm12404 4 41520405 to 41521448 1043 + lncRNA gene predicted gene 12404
Cpgi14160 4 41568298 to 41569938 1640 CpG island CpG island 14160
Tssr41350 4 41569404 to 41569415 11 - TSS region transcription start site region 41350
Tssr41351 4 41569434 to 41569465 31 - TSS region transcription start site region 41351
Tssr41352 4 41569474 to 41569481 7 - TSS region transcription start site region 41352
Tssr41353 4 41569484 to 41569491 7 - TSS region transcription start site region 41353
Tssr41354 4 41569502 to 41569551 49 - TSS region transcription start site region 41354
Tssr41355 4 41569650 to 41569659 9 - TSS region transcription start site region 41355
Tssr41356 4 41569661 to 41569670 9 - TSS region transcription start site region 41356
Dnaic1 4 41569775 to 41638158 68383 + protein coding gene dynein, axonemal, intermediate chain 1
Tssr36875 4 41569791 to 41569822 31 + TSS region transcription start site region 36875
Tssr36876 4 41569828 to 41569876 48 + TSS region transcription start site region 36876
Tssr36877 4 41629970 to 41629977 7 + TSS region transcription start site region 36877
Tssr36878 4 41630562 to 41630579 17 + TSS region transcription start site region 36878
Tssr36879 4 41630594 to 41630607 13 + TSS region transcription start site region 36879
Tssr36880 4 41631660 to 41631672 12 + TSS region transcription start site region 36880
Tssr1149 4 41631688 to 41631703 15 + TSS region transcription start site region 1149
Tssr36881 4 41631713 to 41631724 11 + TSS region transcription start site region 36881
Tssr36882 4 41633286 to 41633297 11 + TSS region transcription start site region 36882
Tssr36883 4 41634851 to 41634899 48 + TSS region transcription start site region 36883
Enho 4 41638144 to 41640302 2158 - protein coding gene energy homeostasis associated
Tssr36884 4 41639358 to 41639405 47 + TSS region transcription start site region 36884
Gm12406 4 41639378 to 41641416 2038 + antisense lncRNA gene predicted gene 12406
Cpgi14161 4 41639501 to 41640784 1283 CpG island CpG island 14161
Tssr41357 4 41639969 to 41639983 14 - TSS region transcription start site region 41357
Tssr41358 4 41640100 to 41640137 37 - TSS region transcription start site region 41358
Tssr41359 4 41640178 to 41640233 55 - TSS region transcription start site region 41359
Tssr41360 4 41640242 to 41640273 31 - TSS region transcription start site region 41360
Tssr41361 4 41640296 to 41640312 16 - TSS region transcription start site region 41361
Tssr41362 4 41640322 to 41640344 22 - TSS region transcription start site region 41362
Tssr41363 4 41640353 to 41640364 11 - TSS region transcription start site region 41363
Tssr41364 4 41640365 to 41640376 11 - TSS region transcription start site region 41364
Tssr41365 4 41640382 to 41640402 20 - TSS region transcription start site region 41365
Gm12405 4 41642185 to 41643077 892 + antisense lncRNA gene predicted gene 12405
Cntfr 4 41657498 to 41697089 39591 - protein coding gene ciliary neurotrophic factor receptor
Tssr41366 4 41681083 to 41681086 3 - TSS region transcription start site region 41366
Cpgi14162 4 41682959 to 41683166 207 CpG island CpG island 14162
Cpgi14163 4 41683521 to 41683701 180 CpG island CpG island 14163
Rpp25l 4 41712033 to 41713534 1501 - protein coding gene ribonuclease P/MRP 25 subunit-like
Cpgi14164 4 41713060 to 41714035 975 CpG island CpG island 14164
Tssr41367 4 41713491 to 41713527 36 - TSS region transcription start site region 41367
Dctn3 4 41714798 to 41723163 8365 - protein coding gene dynactin 3
Cpgi14165 4 41722921 to 41723342 421 CpG island CpG island 14165
Tssr41368 4 41723129 to 41723179 50 - TSS region transcription start site region 41368
Arid3c 4 41723836 to 41731142 7306 - protein coding gene AT rich interactive domain 3C (BRIGHT-like)
Cpgi14166 4 41725768 to 41726254 486 CpG island CpG island 14166
Cpgi14167 4 41730951 to 41731692 741 CpG island CpG island 14167
Tssr41369 4 41731224 to 41731263 39 - TSS region transcription start site region 41369
Sigmar1 4 41738493 to 41755257 16764 - protein coding gene sigma non-opioid intracellular receptor 1
Tssr41370 4 41739487 to 41739505 18 - TSS region transcription start site region 41370
Cpgi14168 4 41740560 to 41741567 1007 CpG island CpG island 14168
Tssr41371 4 41740840 to 41740864 24 - TSS region transcription start site region 41371
Tssr41372 4 41740874 to 41740896 22 - TSS region transcription start site region 41372
Tssr41373 4 41740936 to 41740964 28 - TSS region transcription start site region 41373
Tssr41374 4 41740975 to 41741002 27 - TSS region transcription start site region 41374
Tssr41375 4 41741014 to 41741053 39 - TSS region transcription start site region 41375
Tssr41376 4 41741278 to 41741300 22 - TSS region transcription start site region 41376
Tssr41377 4 41741301 to 41741346 45 - TSS region transcription start site region 41377
Tssr41378 4 41745100 to 41745113 13 - TSS region transcription start site region 41378
D4Mit1004 4 41745683 to 41745802 119 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 1004