Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:40848553-41065302

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
B4galt1 4 40804602 to 40854005 49403 - protein coding gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
Mir5123 4 40850056 to 40850138 82 - miRNA gene microRNA 5123
Gm24112 4 40850144 to 40850226 82 - miRNA gene predicted gene, 24112
Gm25931 4 40850320 to 40850402 82 - miRNA gene predicted gene, 25931
Tssr41270 4 40851653 to 40851668 15 - TSS region transcription start site region 41270
Tssr41271 4 40852103 to 40852108 5 - TSS region transcription start site region 41271
Cpgi14144 4 40853170 to 40854618 1448 CpG island CpG island 14144
Tssr36820 4 40853301 to 40853324 23 + TSS region transcription start site region 36820
Tssr36821 4 40853370 to 40853379 9 + TSS region transcription start site region 36821
Tssr41272 4 40853638 to 40853661 23 - TSS region transcription start site region 41272
Tssr41273 4 40853778 to 40853802 24 - TSS region transcription start site region 41273
Tssr41274 4 40853892 to 40853906 14 - TSS region transcription start site region 41274
Tssr41275 4 40853950 to 40854021 71 - TSS region transcription start site region 41275
Tssr41276 4 40854024 to 40854041 17 - TSS region transcription start site region 41276
Tssr41277 4 40854520 to 40854565 45 - TSS region transcription start site region 41277
Gm34289 4 40872419 to 40900371 27952 + lncRNA gene predicted gene, 34289
Cpgi14145 4 40875687 to 40876066 379 CpG island CpG island 14145
Tssr36822 4 40875966 to 40875981 15 + TSS region transcription start site region 36822
Tssr41278 4 40876016 to 40876030 14 - TSS region transcription start site region 41278
Tssr36823 4 40876195 to 40876208 13 + TSS region transcription start site region 36823
Tssr41279 4 40876829 to 40876857 28 - TSS region transcription start site region 41279
Tssr36824 4 40888996 to 40888999 3 + TSS region transcription start site region 36824
Tssr41280 4 40898552 to 40898560 8 - TSS region transcription start site region 41280
Gm12397 4 40912741 to 40913355 614 - pseudogene predicted gene 12397
Tssr36825 4 40920047 to 40920063 16 + TSS region transcription start site region 36825
Spink4 4 40920056 to 40931395 11339 + protein coding gene serine peptidase inhibitor, Kazal type 4
Tssr41281 4 40931290 to 40931318 28 - TSS region transcription start site region 41281
Bag1 4 40936398 to 40948294 11896 - protein coding gene BCL2-associated athanogene 1
D4Mit195 4 40937840 to 40937943 103 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 195
Tssr41282 4 40942857 to 40942869 12 - TSS region transcription start site region 41282
Cpgi14146 4 40947609 to 40948881 1272 CpG island CpG island 14146
Tssr41283 4 40948102 to 40948113 11 - TSS region transcription start site region 41283
Tssr41284 4 40948131 to 40948150 19 - TSS region transcription start site region 41284
Tssr41285 4 40948184 to 40948195 11 - TSS region transcription start site region 41285
Tssr41286 4 40948196 to 40948296 100 - TSS region transcription start site region 41286
Tssr41287 4 40948301 to 40948318 17 - TSS region transcription start site region 41287
Tssr36826 4 40948401 to 40948412 11 + TSS region transcription start site region 36826
Tssr36827 4 40948493 to 40948504 11 + TSS region transcription start site region 36827
Tssr36828 4 40948521 to 40948530 9 + TSS region transcription start site region 36828
Tssr36829 4 40948535 to 40948589 54 + TSS region transcription start site region 36829
Chmp5 4 40948553 to 40965302 16749 + protein coding gene charged multivesicular body protein 5
Tssr36830 4 40964852 to 40964869 17 + TSS region transcription start site region 36830
Cpgi14147 4 40970665 to 40971666 1001 CpG island CpG island 14147
Nfx1 4 40970906 to 41025992 55086 + protein coding gene nuclear transcription factor, X-box binding 1
Tssr36831 4 40970955 to 40971027 72 + TSS region transcription start site region 36831
Mir3094 4 40993695 to 40993758 63 + miRNA gene microRNA 3094
Tssr36832 4 41000988 to 41000992 4 + TSS region transcription start site region 36832
Aqp7 4 41033074 to 41048139 15065 - protein coding gene aquaporin 7
Tssr41288 4 41033668 to 41033674 6 - TSS region transcription start site region 41288
Tssr41289 4 41045381 to 41045448 67 - TSS region transcription start site region 41289
Tssr36833 4 41045512 to 41045544 32 + TSS region transcription start site region 36833
Tssr41290 4 41047599 to 41047638 39 - TSS region transcription start site region 41290
Tssr41291 4 41047955 to 41047974 19 - TSS region transcription start site region 41291
Tssr41292 4 41047983 to 41047999 16 - TSS region transcription start site region 41292
Tssr41293 4 41048002 to 41048013 11 - TSS region transcription start site region 41293
Tssr41294 4 41048086 to 41048119 33 - TSS region transcription start site region 41294
Tssr41295 4 41048124 to 41048140 16 - TSS region transcription start site region 41295
Tssr41296 4 41048151 to 41048162 11 - TSS region transcription start site region 41296
Gm25637 4 41050220 to 41050326 106 + snRNA gene predicted gene, 25637
D4Mit212 4 41052468 to 41052606 138 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 212
Cpgi14148 4 41055114 to 41055339 225 CpG island CpG island 14148
Tssr41297 4 41064397 to 41064425 28 - TSS region transcription start site region 41297