Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:40493138-40913150

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4933428C19Rik 4 40482840 to 40525548 42708 - lincRNA gene RIKEN cDNA 4933428C19 gene
Gm46856 4 40653991 to 40657408 3417 - pseudogene predicted gene, 46856
Gm12391 4 40678332 to 40678778 446 + pseudogene predicted gene 12391
Aptx 4 40682382 to 40703194 20812 - protein coding gene aprataxin
Tssr41247 4 40697340 to 40697362 22 - TSS region transcription start site region 41247
Tssr41248 4 40702788 to 40702803 15 - TSS region transcription start site region 41248
Tssr41249 4 40702893 to 40702937 44 - TSS region transcription start site region 41249
Cpgi14141 4 40702940 to 40703445 505 CpG island CpG island 14141
Tssr41250 4 40703123 to 40703134 11 - TSS region transcription start site region 41250
Tssr1140 4 40703138 to 40703150 12 - TSS region transcription start site region 1140
Tssr41251 4 40703154 to 40703187 33 - TSS region transcription start site region 41251
Tssr41252 4 40703188 to 40703203 15 - TSS region transcription start site region 41252
Tssr41253 4 40703204 to 40703213 9 - TSS region transcription start site region 41253
Tssr36806 4 40703269 to 40703320 51 + TSS region transcription start site region 36806
Gm12390 4 40716595 to 40716991 396 - pseudogene predicted gene 12390
Tssr41254 4 40717009 to 40717011 2 - TSS region transcription start site region 41254
Gm6297 4 40720154 to 40722398 2244 - lincRNA gene predicted gene 6297
Tssr1141 4 40721019 to 40721054 35 - TSS region transcription start site region 1141
Tssr36807 4 40721127 to 40721136 9 + TSS region transcription start site region 36807
Tssr36808 4 40721139 to 40721148 9 + TSS region transcription start site region 36808
Cpgi14142 4 40722019 to 40723308 1289 CpG island CpG island 14142
Tssr41255 4 40722307 to 40722333 26 - TSS region transcription start site region 41255
Tssr36809 4 40722461 to 40722512 51 + TSS region transcription start site region 36809
Dnaja1 4 40722468 to 40734965 12497 + protein coding gene DnaJ heat shock protein family (Hsp40) member A1
Tssr36810 4 40722525 to 40722547 22 + TSS region transcription start site region 36810
Tssr36811 4 40722912 to 40723001 89 + TSS region transcription start site region 36811
Mir207 4 40722917 to 40722995 78 + miRNA gene microRNA 207
Tssr36812 4 40723017 to 40723031 14 + TSS region transcription start site region 36812
Tssr36813 4 40723084 to 40723104 20 + TSS region transcription start site region 36813
Tssr36814 4 40726825 to 40726831 6 + TSS region transcription start site region 36814
Tssr36815 4 40727101 to 40727105 4 + TSS region transcription start site region 36815
Tssr36816 4 40728974 to 40728977 3 + TSS region transcription start site region 36816
Tssr36817 4 40731276 to 40731302 26 + TSS region transcription start site region 36817
Smu1 4 40736542 to 40757923 21381 - protein coding gene smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
Cpgi14143 4 40757355 to 40758157 802 CpG island CpG island 14143
Tssr41256 4 40757818 to 40757821 3 - TSS region transcription start site region 41256
Tssr41257 4 40757823 to 40757890 67 - TSS region transcription start site region 41257
Tssr1142 4 40759975 to 40759985 10 - TSS region transcription start site region 1142
Tssr1143 4 40766455 to 40766462 7 - TSS region transcription start site region 1143
Tssr36818 4 40769531 to 40769533 2 + TSS region transcription start site region 36818
D4Mit319 4 40770999 to 40771122 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 319
Gm34213 4 40772976 to 40776776 3800 + lncRNA gene predicted gene, 34213
Gm12396 4 40775259 to 40775564 305 - pseudogene predicted gene 12396
Tssr41258 4 40780997 to 40781001 4 - TSS region transcription start site region 41258
Tssr41259 4 40781844 to 40781855 11 - TSS region transcription start site region 41259
Tssr41260 4 40781873 to 40781895 22 - TSS region transcription start site region 41260
B4galt1 4 40804602 to 40854005 49403 - protein coding gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
Tssr41261 4 40805240 to 40805244 4 - TSS region transcription start site region 41261
Tssr41262 4 40805846 to 40805863 17 - TSS region transcription start site region 41262
Tssr41263 4 40806010 to 40806025 15 - TSS region transcription start site region 41263
Tssr41264 4 40806060 to 40806085 25 - TSS region transcription start site region 41264
Tssr41265 4 40806563 to 40806581 18 - TSS region transcription start site region 41265
Tssr41266 4 40823575 to 40823595 20 - TSS region transcription start site region 41266
Tssr41267 4 40823723 to 40823736 13 - TSS region transcription start site region 41267
Tssr41268 4 40839281 to 40839291 10 - TSS region transcription start site region 41268
Tssr36819 4 40845772 to 40845775 3 + TSS region transcription start site region 36819
Tssr41269 4 40846608 to 40846639 31 - TSS region transcription start site region 41269
Mir5123 4 40850056 to 40850138 82 - miRNA gene microRNA 5123
Gm24112 4 40850144 to 40850226 82 - miRNA gene predicted gene, 24112
Gm25931 4 40850320 to 40850402 82 - miRNA gene predicted gene, 25931
Tssr41270 4 40851653 to 40851668 15 - TSS region transcription start site region 41270
Tssr41271 4 40852103 to 40852108 5 - TSS region transcription start site region 41271
Cpgi14144 4 40853170 to 40854618 1448 CpG island CpG island 14144
Tssr36820 4 40853301 to 40853324 23 + TSS region transcription start site region 36820
Tssr36821 4 40853370 to 40853379 9 + TSS region transcription start site region 36821
Tssr41272 4 40853638 to 40853661 23 - TSS region transcription start site region 41272
Tssr41273 4 40853778 to 40853802 24 - TSS region transcription start site region 41273
Tssr41274 4 40853892 to 40853906 14 - TSS region transcription start site region 41274
Tssr41275 4 40853950 to 40854021 71 - TSS region transcription start site region 41275
Tssr41276 4 40854024 to 40854041 17 - TSS region transcription start site region 41276
Tssr41277 4 40854520 to 40854565 45 - TSS region transcription start site region 41277
Gm34289 4 40872419 to 40900371 27952 + lncRNA gene predicted gene, 34289
Cpgi14145 4 40875687 to 40876066 379 CpG island CpG island 14145
Tssr36822 4 40875966 to 40875981 15 + TSS region transcription start site region 36822
Tssr41278 4 40876016 to 40876030 14 - TSS region transcription start site region 41278
Tssr36823 4 40876195 to 40876208 13 + TSS region transcription start site region 36823
Tssr41279 4 40876829 to 40876857 28 - TSS region transcription start site region 41279
Tssr36824 4 40888996 to 40888999 3 + TSS region transcription start site region 36824
Tssr41280 4 40898552 to 40898560 8 - TSS region transcription start site region 41280
Gm12397 4 40912741 to 40913355 614 - pseudogene predicted gene 12397