Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:3999342-5558306

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdr16c5 4 3995942 to 4019663 23721 - protein coding gene short chain dehydrogenase/reductase family 16C, member 5
Tssr40818 4 4016472 to 4016482 10 - TSS region transcription start site region 40818
Tssr40819 4 4016484 to 4016497 13 - TSS region transcription start site region 40819
Tssr40820 4 4016524 to 4016539 15 - TSS region transcription start site region 40820
Tssr40821 4 4019488 to 4019499 11 - TSS region transcription start site region 40821
Tssr40822 4 4019508 to 4019562 54 - TSS region transcription start site region 40822
Tssr40823 4 4019566 to 4019576 10 - TSS region transcription start site region 40823
Tssr40824 4 4019628 to 4019659 31 - TSS region transcription start site region 40824
Tssr40825 4 4019668 to 4019675 7 - TSS region transcription start site region 40825
Sdr16c6 4 4055926 to 4077514 21588 - protein coding gene short chain dehydrogenase/reductase family 16C, member 6
Tssr40826 4 4077510 to 4077540 30 - TSS region transcription start site region 40826
Tssr40827 4 4112256 to 4112279 23 - TSS region transcription start site region 40827
Penk 4 4133531 to 4138819 5288 - protein coding gene preproenkephalin
Tssr40828 4 4133805 to 4133822 17 - TSS region transcription start site region 40828
Tssr40829 4 4133842 to 4133856 14 - TSS region transcription start site region 40829
Tssr40830 4 4134195 to 4134210 15 - TSS region transcription start site region 40830
Cpgi13996 4 4137955 to 4139202 1247 CpG island CpG island 13996
Tssr40831 4 4138171 to 4138215 44 - TSS region transcription start site region 40831
Tssr40832 4 4138217 to 4138231 14 - TSS region transcription start site region 40832
Tssr36372 4 4138298 to 4138343 45 + TSS region transcription start site region 36372
Tssr40833 4 4138432 to 4138480 48 - TSS region transcription start site region 40833
Tssr40834 4 4138774 to 4138798 24 - TSS region transcription start site region 40834
Tssr40835 4 4138817 to 4138828 11 - TSS region transcription start site region 40835
Tssr40836 4 4138961 to 4138968 7 - TSS region transcription start site region 40836
Tssr40837 4 4138991 to 4139024 33 - TSS region transcription start site region 40837
A830012C17Rik 4 4148030 to 4181846 33816 + lncRNA gene RIKEN cDNA A830012C17 gene
Gm33007 4 4377272 to 4418084 40812 + lncRNA gene predicted gene, 33007
Tssr40838 4 4464126 to 4464129 3 - TSS region transcription start site region 40838
Gm33057 4 4523523 to 4543169 19646 + lncRNA gene predicted gene, 33057
Gm11780 4 4528204 to 4528719 515 - pseudogene predicted gene 11780
Tssr40839 4 4529437 to 4529464 27 - TSS region transcription start site region 40839
Gm33182 4 4543272 to 4564877 21605 + lncRNA gene predicted gene, 33182
Tssr40840 4 4576403 to 4576415 12 - TSS region transcription start site region 40840
Gm33259 4 4622587 to 4625490 2903 + lncRNA gene predicted gene, 33259
Gm26436 4 4729573 to 4729704 131 + snoRNA gene predicted gene, 26436
Impad1 4 4764342 to 4793306 28964 - protein coding gene inositol monophosphatase domain containing 1
Tssr40841 4 4765403 to 4765407 4 - TSS region transcription start site region 40841
Cpgi13997 4 4792423 to 4793476 1053 CpG island CpG island 13997
Tssr40842 4 4793275 to 4793382 107 - TSS region transcription start site region 40842
Gm18933 4 4944226 to 4944855 629 - pseudogene predicted gene, 18933
Gm11779 4 4978507 to 4978874 367 - pseudogene predicted gene 11779
Tssr36373 4 5153047 to 5153053 6 + TSS region transcription start site region 36373
D4Mit316 4 5263968 to 5264079 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 316
Tssr36374 4 5472440 to 5472445 5 + TSS region transcription start site region 36374
Tssr36375 4 5536821 to 5536825 4 + TSS region transcription start site region 36375
Gm11782 4 5545238 to 5551223 5985 - lincRNA gene predicted gene 11782