Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:39198196-42698296

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463 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm25581 4 39259631 to 39259794 163 - snRNA gene predicted gene, 25581
Tssr41233 4 39259790 to 39259796 6 - TSS region transcription start site region 41233
Gm12383 4 39263561 to 39264303 742 + pseudogene predicted gene 12383
Gm23607 4 39295463 to 39295588 125 + snoRNA gene predicted gene, 23607
D4Mit4 4 39373448 to 39373612 164 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 4
Sluc18 4 39373448 to 39373612 164 QTL susceptibility to lung cancer 18
Bdln6 4 39373448 to 39373612 164 QTL body length 6
Scon1 4 39373448 to 39373612 164 QTL sucrose consumption 1
D4Dcr34 4 39373500 to 39373610 110 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 34
Gm42270 4 39383244 to 39388661 5417 + pseudogene predicted gene, 42270
Gm17094 4 39400007 to 39420690 20683 - antisense lncRNA gene predicted gene 17094
Tssr36788 4 39450268 to 39450314 46 + TSS region transcription start site region 36788
1700009N14Rik 4 39450295 to 39451776 1481 + protein coding gene RIKEN cDNA 1700009N14 gene
Tssr36789 4 39450316 to 39450331 15 + TSS region transcription start site region 36789
Habiir2 4 39452126 to 63365441 23913315 QTL hyperoxic acute lung injury imprinted region 2
D4Mit196 4 39452126 to 39452312 186 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 196
vsd 4 39452126 to 56769494 17317368 heritable phenotypic marker ventricular septal defect
D4Dcr35 4 39478641 to 39478751 110 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 35
Gm42271 4 39495705 to 39508994 13289 - lncRNA gene predicted gene, 42271
Gm42272 4 39708728 to 39712169 3441 - lncRNA gene predicted gene, 42272
Gm34007 4 39714710 to 39791320 76610 - lncRNA gene predicted gene, 34007
Tssr1138 4 39740758 to 39740759 1 + TSS region transcription start site region 1138
Gm12385 4 39767618 to 39768412 794 + pseudogene predicted gene 12385
Gm34071 4 39788744 to 39792398 3654 + lncRNA gene predicted gene, 34071
Gm12384 4 39823722 to 39824365 643 + pseudogene predicted gene 12384
Gm12386 4 39844187 to 39844874 687 - pseudogene predicted gene 12386
Gm22850 4 39865687 to 39865768 81 + snRNA gene predicted gene, 22850
Gm12387 4 39895208 to 39896162 954 - pseudogene predicted gene 12387
Gm34132 4 39936874 to 39952708 15834 - lncRNA gene predicted gene, 34132
Gm26087 4 39981497 to 39981558 61 - snRNA gene predicted gene, 26087
Tssr41234 4 40063792 to 40063811 19 - TSS region transcription start site region 41234
Gm12388 4 40069139 to 40070981 1842 + pseudogene predicted gene 12388
Gm12389 4 40116816 to 40117233 417 - pseudogene predicted gene 12389
Cpgi14134 4 40142842 to 40144030 1188 CpG island CpG island 14134
Tssr36790 4 40143080 to 40143107 27 + TSS region transcription start site region 36790
Aco1 4 40143081 to 40198338 55257 + protein coding gene aconitase 1
Tssr36791 4 40143368 to 40143444 76 + TSS region transcription start site region 36791
Tssr36792 4 40143460 to 40143502 42 + TSS region transcription start site region 36792
Tssr36793 4 40143510 to 40143521 11 + TSS region transcription start site region 36793
Tssr36794 4 40155821 to 40155831 10 + TSS region transcription start site region 36794
Tssr36795 4 40160048 to 40160050 2 + TSS region transcription start site region 36795
Tssr36796 4 40160296 to 40160301 5 + TSS region transcription start site region 36796
Tssr36797 4 40181979 to 40181994 15 + TSS region transcription start site region 36797
Tssr36798 4 40183572 to 40183592 20 + TSS region transcription start site region 36798
Tssr36799 4 40184932 to 40184944 12 + TSS region transcription start site region 36799
Tssr36800 4 40184950 to 40184989 39 + TSS region transcription start site region 36800
Tssr36801 4 40193740 to 40193745 5 + TSS region transcription start site region 36801
Ddx58 4 40203777 to 40239825 36048 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
Tssr41235 4 40210133 to 40210138 5 - TSS region transcription start site region 41235
Tssr41236 4 40214356 to 40214366 10 - TSS region transcription start site region 41236
Tssr41237 4 40220578 to 40220605 27 - TSS region transcription start site region 41237
Tssr41238 4 40234404 to 40234434 30 - TSS region transcription start site region 41238
Tssr41239 4 40239713 to 40239727 14 - TSS region transcription start site region 41239
Tssr41240 4 40239746 to 40239766 20 - TSS region transcription start site region 41240
Tssr41241 4 40239779 to 40239831 52 - TSS region transcription start site region 41241
Topors 4 40259606 to 40269841 10235 - protein coding gene topoisomerase I binding, arginine/serine-rich
Tssr1139 4 40260464 to 40260467 3 + TSS region transcription start site region 1139
Tssr36802 4 40260503 to 40260519 16 + TSS region transcription start site region 36802
Tssr41242 4 40261680 to 40261691 11 - TSS region transcription start site region 41242
Cpgi14135 4 40267975 to 40269024 1049 CpG island CpG island 14135
Tssr41243 4 40268444 to 40268565 121 - TSS region transcription start site region 41243
Cpgi14136 4 40269406 to 40270054 648 CpG island CpG island 14136
Tssr36803 4 40269563 to 40269595 32 + TSS region transcription start site region 36803
Smim27 4 40269579 to 40270221 642 + protein coding gene small integral membrane protein 27
Tssr41244 4 40269778 to 40269849 71 - TSS region transcription start site region 41244
Tssr36804 4 40269887 to 40269911 24 + TSS region transcription start site region 36804
Tssr36805 4 40269915 to 40269956 41 + TSS region transcription start site region 36805
Ndufb6 4 40270591 to 40279421 8830 - protein coding gene NADH:ubiquinone oxidoreductase subunit B6
Cpgi14137 4 40278848 to 40279792 944 CpG island CpG island 14137
Tssr41245 4 40279340 to 40279381 41 - TSS region transcription start site region 41245
Tssr41246 4 40279389 to 40279434 45 - TSS region transcription start site region 41246
Cpgi14138 4 40308111 to 40308315 204 CpG island CpG island 14138
4930509K18Rik 4 40313232 to 40317719 4487 + lincRNA gene RIKEN cDNA 4930509K18 gene
Gm23338 4 40458939 to 40459033 94 - snoRNA gene predicted gene, 23338
Tmem215 4 40472180 to 40475653 3473 + protein coding gene transmembrane protein 215
Cpgi14139 4 40472730 to 40473584 854 CpG island CpG island 14139
Cpgi14140 4 40481364 to 40481737 373 CpG island CpG island 14140
4933428C19Rik 4 40482840 to 40525548 42708 - lincRNA gene RIKEN cDNA 4933428C19 gene
Gm46856 4 40653991 to 40657408 3417 - pseudogene predicted gene, 46856
Gm12391 4 40678332 to 40678778 446 + pseudogene predicted gene 12391
Aptx 4 40682382 to 40703194 20812 - protein coding gene aprataxin
Tssr41247 4 40697340 to 40697362 22 - TSS region transcription start site region 41247
Tssr41248 4 40702788 to 40702803 15 - TSS region transcription start site region 41248
Tssr41249 4 40702893 to 40702937 44 - TSS region transcription start site region 41249
Cpgi14141 4 40702940 to 40703445 505 CpG island CpG island 14141
Tssr41250 4 40703123 to 40703134 11 - TSS region transcription start site region 41250
Tssr1140 4 40703138 to 40703150 12 - TSS region transcription start site region 1140
Tssr41251 4 40703154 to 40703187 33 - TSS region transcription start site region 41251
Tssr41252 4 40703188 to 40703203 15 - TSS region transcription start site region 41252
Tssr41253 4 40703204 to 40703213 9 - TSS region transcription start site region 41253
Tssr36806 4 40703269 to 40703320 51 + TSS region transcription start site region 36806
Gm12390 4 40716595 to 40716991 396 - pseudogene predicted gene 12390
Tssr41254 4 40717009 to 40717011 2 - TSS region transcription start site region 41254
Gm6297 4 40720154 to 40722398 2244 - lincRNA gene predicted gene 6297
Tssr1141 4 40721019 to 40721054 35 - TSS region transcription start site region 1141
Tssr36807 4 40721127 to 40721136 9 + TSS region transcription start site region 36807
Tssr36808 4 40721139 to 40721148 9 + TSS region transcription start site region 36808
Cpgi14142 4 40722019 to 40723308 1289 CpG island CpG island 14142
Tssr41255 4 40722307 to 40722333 26 - TSS region transcription start site region 41255
Tssr36809 4 40722461 to 40722512 51 + TSS region transcription start site region 36809
Dnaja1 4 40722468 to 40734965 12497 + protein coding gene DnaJ heat shock protein family (Hsp40) member A1
Tssr36810 4 40722525 to 40722547 22 + TSS region transcription start site region 36810
Tssr36811 4 40722912 to 40723001 89 + TSS region transcription start site region 36811
Mir207 4 40722917 to 40722995 78 + miRNA gene microRNA 207
Tssr36812 4 40723017 to 40723031 14 + TSS region transcription start site region 36812
Tssr36813 4 40723084 to 40723104 20 + TSS region transcription start site region 36813
Tssr36814 4 40726825 to 40726831 6 + TSS region transcription start site region 36814
Tssr36815 4 40727101 to 40727105 4 + TSS region transcription start site region 36815
Tssr36816 4 40728974 to 40728977 3 + TSS region transcription start site region 36816
Tssr36817 4 40731276 to 40731302 26 + TSS region transcription start site region 36817
Smu1 4 40736542 to 40757923 21381 - protein coding gene smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
Cpgi14143 4 40757355 to 40758157 802 CpG island CpG island 14143
Tssr41256 4 40757818 to 40757821 3 - TSS region transcription start site region 41256
Tssr41257 4 40757823 to 40757890 67 - TSS region transcription start site region 41257
Tssr1142 4 40759975 to 40759985 10 - TSS region transcription start site region 1142
Tssr1143 4 40766455 to 40766462 7 - TSS region transcription start site region 1143
Tssr36818 4 40769531 to 40769533 2 + TSS region transcription start site region 36818
D4Mit319 4 40770999 to 40771122 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 319
Gm34213 4 40772976 to 40776776 3800 + lncRNA gene predicted gene, 34213
Gm12396 4 40775259 to 40775564 305 - pseudogene predicted gene 12396
Tssr41258 4 40780997 to 40781001 4 - TSS region transcription start site region 41258
Tssr41259 4 40781844 to 40781855 11 - TSS region transcription start site region 41259
Tssr41260 4 40781873 to 40781895 22 - TSS region transcription start site region 41260
B4galt1 4 40804602 to 40854005 49403 - protein coding gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
Tssr41261 4 40805240 to 40805244 4 - TSS region transcription start site region 41261
Tssr41262 4 40805846 to 40805863 17 - TSS region transcription start site region 41262
Tssr41263 4 40806010 to 40806025 15 - TSS region transcription start site region 41263
Tssr41264 4 40806060 to 40806085 25 - TSS region transcription start site region 41264
Tssr41265 4 40806563 to 40806581 18 - TSS region transcription start site region 41265
Tssr41266 4 40823575 to 40823595 20 - TSS region transcription start site region 41266
Tssr41267 4 40823723 to 40823736 13 - TSS region transcription start site region 41267
Tssr41268 4 40839281 to 40839291 10 - TSS region transcription start site region 41268
Tssr36819 4 40845772 to 40845775 3 + TSS region transcription start site region 36819
Tssr41269 4 40846608 to 40846639 31 - TSS region transcription start site region 41269
Mir5123 4 40850056 to 40850138 82 - miRNA gene microRNA 5123
Gm24112 4 40850144 to 40850226 82 - miRNA gene predicted gene, 24112
Gm25931 4 40850320 to 40850402 82 - miRNA gene predicted gene, 25931
Tssr41270 4 40851653 to 40851668 15 - TSS region transcription start site region 41270
Tssr41271 4 40852103 to 40852108 5 - TSS region transcription start site region 41271
Cpgi14144 4 40853170 to 40854618 1448 CpG island CpG island 14144
Tssr36820 4 40853301 to 40853324 23 + TSS region transcription start site region 36820
Tssr36821 4 40853370 to 40853379 9 + TSS region transcription start site region 36821
Tssr41272 4 40853638 to 40853661 23 - TSS region transcription start site region 41272
Tssr41273 4 40853778 to 40853802 24 - TSS region transcription start site region 41273
Tssr41274 4 40853892 to 40853906 14 - TSS region transcription start site region 41274
Tssr41275 4 40853950 to 40854021 71 - TSS region transcription start site region 41275
Tssr41276 4 40854024 to 40854041 17 - TSS region transcription start site region 41276
Tssr41277 4 40854520 to 40854565 45 - TSS region transcription start site region 41277
Gm34289 4 40872419 to 40900371 27952 + lncRNA gene predicted gene, 34289
Cpgi14145 4 40875687 to 40876066 379 CpG island CpG island 14145
Tssr36822 4 40875966 to 40875981 15 + TSS region transcription start site region 36822
Tssr41278 4 40876016 to 40876030 14 - TSS region transcription start site region 41278
Tssr36823 4 40876195 to 40876208 13 + TSS region transcription start site region 36823
Tssr41279 4 40876829 to 40876857 28 - TSS region transcription start site region 41279
Tssr36824 4 40888996 to 40888999 3 + TSS region transcription start site region 36824
Tssr41280 4 40898552 to 40898560 8 - TSS region transcription start site region 41280
Gm12397 4 40912741 to 40913355 614 - pseudogene predicted gene 12397
Tssr36825 4 40920047 to 40920063 16 + TSS region transcription start site region 36825
Spink4 4 40920056 to 40931395 11339 + protein coding gene serine peptidase inhibitor, Kazal type 4
Tssr41281 4 40931290 to 40931318 28 - TSS region transcription start site region 41281
Bag1 4 40936398 to 40948294 11896 - protein coding gene BCL2-associated athanogene 1
D4Mit195 4 40937840 to 40937943 103 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 195
Tssr41282 4 40942857 to 40942869 12 - TSS region transcription start site region 41282
Cpgi14146 4 40947609 to 40948881 1272 CpG island CpG island 14146
Tssr41283 4 40948102 to 40948113 11 - TSS region transcription start site region 41283
Tssr41284 4 40948131 to 40948150 19 - TSS region transcription start site region 41284
Tssr41285 4 40948184 to 40948195 11 - TSS region transcription start site region 41285
Tssr41286 4 40948196 to 40948296 100 - TSS region transcription start site region 41286
Tssr41287 4 40948301 to 40948318 17 - TSS region transcription start site region 41287
Tssr36826 4 40948401 to 40948412 11 + TSS region transcription start site region 36826
Tssr36827 4 40948493 to 40948504 11 + TSS region transcription start site region 36827
Tssr36828 4 40948521 to 40948530 9 + TSS region transcription start site region 36828
Tssr36829 4 40948535 to 40948589 54 + TSS region transcription start site region 36829
Chmp5 4 40948553 to 40965302 16749 + protein coding gene charged multivesicular body protein 5
Tssr36830 4 40964852 to 40964869 17 + TSS region transcription start site region 36830
Cpgi14147 4 40970665 to 40971666 1001 CpG island CpG island 14147
Nfx1 4 40970906 to 41025992 55086 + protein coding gene nuclear transcription factor, X-box binding 1
Tssr36831 4 40970955 to 40971027 72 + TSS region transcription start site region 36831
Mir3094 4 40993695 to 40993758 63 + miRNA gene microRNA 3094
Tssr36832 4 41000988 to 41000992 4 + TSS region transcription start site region 36832
Aqp7 4 41033074 to 41048139 15065 - protein coding gene aquaporin 7
Tssr41288 4 41033668 to 41033674 6 - TSS region transcription start site region 41288
Tssr41289 4 41045381 to 41045448 67 - TSS region transcription start site region 41289
Tssr36833 4 41045512 to 41045544 32 + TSS region transcription start site region 36833
Tssr41290 4 41047599 to 41047638 39 - TSS region transcription start site region 41290
Tssr41291 4 41047955 to 41047974 19 - TSS region transcription start site region 41291
Tssr41292 4 41047983 to 41047999 16 - TSS region transcription start site region 41292
Tssr41293 4 41048002 to 41048013 11 - TSS region transcription start site region 41293
Tssr41294 4 41048086 to 41048119 33 - TSS region transcription start site region 41294
Tssr41295 4 41048124 to 41048140 16 - TSS region transcription start site region 41295
Tssr41296 4 41048151 to 41048162 11 - TSS region transcription start site region 41296
Gm25637 4 41050220 to 41050326 106 + snRNA gene predicted gene, 25637
D4Mit212 4 41052468 to 41052606 138 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 212
Cpgi14148 4 41055114 to 41055339 225 CpG island CpG island 14148
Tssr41297 4 41064397 to 41064425 28 - TSS region transcription start site region 41297
Tssr36834 4 41067845 to 41067853 8 + TSS region transcription start site region 36834
Cpgi14149 4 41075021 to 41075283 262 CpG island CpG island 14149
Aqp3 4 41092724 to 41098183 5459 - protein coding gene aquaporin 3
Tssr41298 4 41093356 to 41093368 12 - TSS region transcription start site region 41298
Tssr41299 4 41093423 to 41093440 17 - TSS region transcription start site region 41299