Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:3788507-6168874

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lyn 4 3678121 to 3791612 113491 + protein coding gene LYN proto-oncogene, Src family tyrosine kinase
Tssr36355 4 3789921 to 3789928 7 + TSS region transcription start site region 36355
Tssr36356 4 3789991 to 3790002 11 + TSS region transcription start site region 36356
Tssr36357 4 3790017 to 3790020 3 + TSS region transcription start site region 36357
Tssr36358 4 3790257 to 3790279 22 + TSS region transcription start site region 36358
Tssr36359 4 3790290 to 3790301 11 + TSS region transcription start site region 36359
Tssr36360 4 3790308 to 3790329 21 + TSS region transcription start site region 36360
Tssr36361 4 3790339 to 3790360 21 + TSS region transcription start site region 36361
Tssr36362 4 3790391 to 3790395 4 + TSS region transcription start site region 36362
Tssr36363 4 3791988 to 3792008 20 + TSS region transcription start site region 36363
Tssr36364 4 3792611 to 3792615 4 + TSS region transcription start site region 36364
Gm22781 4 3796447 to 3796583 136 - snoRNA gene predicted gene, 22781
Tssr36365 4 3804378 to 3804383 5 + TSS region transcription start site region 36365
9430025C20Rik 4 3806635 to 3808751 2116 - pseudogene RIKEN cDNA 9430025C20 gene
Tssr36366 4 3809105 to 3809111 6 + TSS region transcription start site region 36366
Rps20 4 3831584 to 3835655 4071 - protein coding gene ribosomal protein S20
Tssr36367 4 3834467 to 3834475 8 + TSS region transcription start site region 36367
Cpgi13992 4 3834989 to 3835997 1008 CpG island CpG island 13992
Gm24016 4 3835079 to 3835146 67 - snoRNA gene predicted gene, 24016
Tssr40811 4 3835595 to 3835602 7 - TSS region transcription start site region 40811
Gm32823 4 3835735 to 3864892 29157 + lncRNA gene predicted gene, 32823
Gm24125 4 3857477 to 3857613 136 - snoRNA gene predicted gene, 24125
Mos 4 3870658 to 3872105 1447 - protein coding gene Moloney sarcoma oncogene
Cpgi13993 4 3870832 to 3871908 1076 CpG island CpG island 13993
Cpgi13994 4 3874813 to 3875398 585 CpG island CpG island 13994
Tssr40812 4 3875168 to 3875179 11 - TSS region transcription start site region 40812
Tssr40813 4 3875202 to 3875270 68 - TSS region transcription start site region 40813
Tssr40814 4 3899011 to 3899015 4 - TSS region transcription start site region 40814
Plag1 4 3900996 to 3938423 37427 - protein coding gene pleiomorphic adenoma gene 1
Tssr40815 4 3903327 to 3903328 1 - TSS region transcription start site region 40815
Cpgi13995 4 3937520 to 3939405 1885 CpG island CpG island 13995
Tssr40816 4 3938354 to 3938401 47 - TSS region transcription start site region 40816
Chchd7 4 3938888 to 3951046 12158 + protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 7
Tssr36368 4 3938893 to 3938898 5 + TSS region transcription start site region 36368
Tssr36369 4 3938904 to 3938932 28 + TSS region transcription start site region 36369
Tssr36370 4 3939381 to 3939421 40 + TSS region transcription start site region 36370
Tssr36371 4 3940747 to 3940751 4 + TSS region transcription start site region 36371
Gm19037 4 3961244 to 3962346 1102 + pseudogene predicted gene, 19037
Gm11808 4 3973117 to 3973595 478 - protein coding gene predicted gene 11808
Tssr40817 4 3973595 to 3973607 12 - TSS region transcription start site region 40817
Rps10-ps3 4 3978251 to 3978750 499 - pseudogene ribosomal protein S10, pseudogene 3
Sdr16c5 4 3995942 to 4019663 23721 - protein coding gene short chain dehydrogenase/reductase family 16C, member 5
Tssr40818 4 4016472 to 4016482 10 - TSS region transcription start site region 40818
Tssr40819 4 4016484 to 4016497 13 - TSS region transcription start site region 40819
Tssr40820 4 4016524 to 4016539 15 - TSS region transcription start site region 40820
Tssr40821 4 4019488 to 4019499 11 - TSS region transcription start site region 40821
Tssr40822 4 4019508 to 4019562 54 - TSS region transcription start site region 40822
Tssr40823 4 4019566 to 4019576 10 - TSS region transcription start site region 40823
Tssr40824 4 4019628 to 4019659 31 - TSS region transcription start site region 40824
Tssr40825 4 4019668 to 4019675 7 - TSS region transcription start site region 40825
Sdr16c6 4 4055926 to 4077514 21588 - protein coding gene short chain dehydrogenase/reductase family 16C, member 6
Tssr40826 4 4077510 to 4077540 30 - TSS region transcription start site region 40826
Tssr40827 4 4112256 to 4112279 23 - TSS region transcription start site region 40827
Penk 4 4133531 to 4138819 5288 - protein coding gene preproenkephalin
Tssr40828 4 4133805 to 4133822 17 - TSS region transcription start site region 40828
Tssr40829 4 4133842 to 4133856 14 - TSS region transcription start site region 40829
Tssr40830 4 4134195 to 4134210 15 - TSS region transcription start site region 40830
Cpgi13996 4 4137955 to 4139202 1247 CpG island CpG island 13996
Tssr40831 4 4138171 to 4138215 44 - TSS region transcription start site region 40831
Tssr40832 4 4138217 to 4138231 14 - TSS region transcription start site region 40832
Tssr36372 4 4138298 to 4138343 45 + TSS region transcription start site region 36372
Tssr40833 4 4138432 to 4138480 48 - TSS region transcription start site region 40833
Tssr40834 4 4138774 to 4138798 24 - TSS region transcription start site region 40834
Tssr40835 4 4138817 to 4138828 11 - TSS region transcription start site region 40835
Tssr40836 4 4138961 to 4138968 7 - TSS region transcription start site region 40836
Tssr40837 4 4138991 to 4139024 33 - TSS region transcription start site region 40837
A830012C17Rik 4 4148030 to 4181846 33816 + lncRNA gene RIKEN cDNA A830012C17 gene
Gm33007 4 4377272 to 4418084 40812 + lncRNA gene predicted gene, 33007
Tssr40838 4 4464126 to 4464129 3 - TSS region transcription start site region 40838
Gm33057 4 4523523 to 4543169 19646 + lncRNA gene predicted gene, 33057
Gm11780 4 4528204 to 4528719 515 - pseudogene predicted gene 11780
Tssr40839 4 4529437 to 4529464 27 - TSS region transcription start site region 40839
Gm33182 4 4543272 to 4564877 21605 + lncRNA gene predicted gene, 33182
Tssr40840 4 4576403 to 4576415 12 - TSS region transcription start site region 40840
Gm33259 4 4622587 to 4625490 2903 + lncRNA gene predicted gene, 33259
Gm26436 4 4729573 to 4729704 131 + snoRNA gene predicted gene, 26436
Impad1 4 4764342 to 4793306 28964 - protein coding gene inositol monophosphatase domain containing 1
Tssr40841 4 4765403 to 4765407 4 - TSS region transcription start site region 40841
Cpgi13997 4 4792423 to 4793476 1053 CpG island CpG island 13997
Tssr40842 4 4793275 to 4793382 107 - TSS region transcription start site region 40842
Gm18933 4 4944226 to 4944855 629 - pseudogene predicted gene, 18933
Gm11779 4 4978507 to 4978874 367 - pseudogene predicted gene 11779
Tssr36373 4 5153047 to 5153053 6 + TSS region transcription start site region 36373
D4Mit316 4 5263968 to 5264079 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 316
Tssr36374 4 5472440 to 5472445 5 + TSS region transcription start site region 36374
Tssr36375 4 5536821 to 5536825 4 + TSS region transcription start site region 36375
Gm11782 4 5545238 to 5551223 5985 - lincRNA gene predicted gene 11782
Gm11781 4 5602924 to 5603395 471 - pseudogene predicted gene 11781
Tssr36376 4 5611846 to 5611856 10 + TSS region transcription start site region 36376
4930423M02Rik 4 5632328 to 5642284 9956 + lincRNA gene RIKEN cDNA 4930423M02 gene
Tssr36377 4 5632331 to 5632340 9 + TSS region transcription start site region 36377
Cpgi13998 4 5643825 to 5644860 1035 CpG island CpG island 13998
Fam110b 4 5644079 to 5801101 157022 + protein coding gene family with sequence similarity 110, member B
Tssr36378 4 5644084 to 5644129 45 + TSS region transcription start site region 36378
Tssr36379 4 5644133 to 5644211 78 + TSS region transcription start site region 36379
Tssr36380 4 5644216 to 5644240 24 + TSS region transcription start site region 36380
Tssr36381 4 5644268 to 5644279 11 + TSS region transcription start site region 36381
Gm24337 4 5687677 to 5687802 125 - snoRNA gene predicted gene, 24337
Tssr36382 4 5724304 to 5724357 53 + TSS region transcription start site region 36382
Tssr36383 4 5786673 to 5786675 2 + TSS region transcription start site region 36383
Cpgi13999 4 5798251 to 5799067 816 CpG island CpG island 13999
Gm11796 4 5854516 to 5855487 971 - pseudogene predicted gene 11796
D4Mit103 4 5955486 to 5955614 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 103
Sm1 4 5955486 to 5955614 128 QTL susceptibility to Schistosoma mansoni infection 1
Gm18158 4 6025065 to 6025846 781 - pseudogene predicted gene, 18158
Gm11797 4 6069901 to 6070627 726 + pseudogene predicted gene 11797