Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:34600000-37400000

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Orc3 4 34570796 to 34614944 44148 - protein coding gene origin recognition complex, subunit 3
Cpgi14120 4 34614597 to 34615251 654 CpG island CpG island 14120
Tssr41192 4 34614886 to 34614931 45 - TSS region transcription start site region 41192
Tssr36772 4 34614940 to 34614996 56 + TSS region transcription start site region 36772
Rars2 4 34614957 to 34660167 45210 + protein coding gene arginyl-tRNA synthetase 2, mitochondrial
Slc35a1 4 34663257 to 34687438 24181 - protein coding gene solute carrier family 35 (CMP-sialic acid transporter), member 1
Gm22849 4 34683879 to 34684185 306 + unclassified non-coding RNA gene predicted gene, 22849
Cpgi14121 4 34686778 to 34687573 795 CpG island CpG island 14121
Tssr41193 4 34687262 to 34687309 47 - TSS region transcription start site region 41193
Tssr41194 4 34687312 to 34687342 30 - TSS region transcription start site region 41194
Tssr41195 4 34687347 to 34687375 28 - TSS region transcription start site region 41195
Tssr41196 4 34687382 to 34687452 70 - TSS region transcription start site region 41196
Tssr41197 4 34687457 to 34687464 7 - TSS region transcription start site region 41197
Cfap206 4 34688559 to 34730206 41647 - protein coding gene cilia and flagella associated protein 206
Cpgi14122 4 34729872 to 34730326 454 CpG island CpG island 14122
Tssr1135 4 34730120 to 34730127 7 - TSS region transcription start site region 1135
Tssr41198 4 34730142 to 34730153 11 - TSS region transcription start site region 41198
Tssr41199 4 34730157 to 34730232 75 - TSS region transcription start site region 41199
Gm136 4 34743788 to 34756259 12471 - protein coding gene predicted gene 136
Tssr41200 4 34756195 to 34756201 6 - TSS region transcription start site region 41200
Tssr41201 4 34756222 to 34756233 11 - TSS region transcription start site region 41201
Tssr41202 4 34756234 to 34756267 33 - TSS region transcription start site region 41202
Smim8 4 34768664 to 34778396 9732 - protein coding gene small integral membrane protein 8
Cpgi14123 4 34778219 to 34778532 313 CpG island CpG island 14123
Tssr41203 4 34778322 to 34778381 59 - TSS region transcription start site region 41203
Zfp292 4 34803113 to 34882960 79847 - protein coding gene zinc finger protein 292
Tssr41204 4 34805884 to 34805887 3 - TSS region transcription start site region 41204
Tssr41205 4 34806307 to 34806348 41 - TSS region transcription start site region 41205
Tssr41206 4 34806927 to 34806975 48 - TSS region transcription start site region 41206
Tssr41207 4 34834862 to 34834865 3 - TSS region transcription start site region 41207
Gm12363 4 34842985 to 34843652 667 + pseudogene predicted gene 12363
2810040C05Rik 4 34855496 to 34856850 1354 unclassified gene RIKEN cDNA 2810040C05 gene
Cpgi14124 4 34882325 to 34883275 950 CpG island CpG island 14124
Tssr41208 4 34882919 to 34882964 45 - TSS region transcription start site region 41208
Cpgi14125 4 34886537 to 34887140 603 CpG island CpG island 14125
Tssr36773 4 34886642 to 34886654 12 + TSS region transcription start site region 36773
Tssr36774 4 34886688 to 34886712 24 + TSS region transcription start site region 36774
A330027G23Rik 4 34886711 to 34889905 3194 unclassified gene RIKEN cDNA A330027G23 gene
D4Mit41 4 34892515 to 34892635 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 41
Nbwa2 4 34892515 to 34892635 120 QTL NZB and NZW autoimmunity 2
D4Nds3 4 34892543 to 34892680 137 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 3
Tssr36775 4 34893729 to 34893738 9 + TSS region transcription start site region 36775
Tssr36776 4 34893751 to 34893759 8 + TSS region transcription start site region 36776
Tssr36777 4 34893761 to 34893766 5 + TSS region transcription start site region 36777
Tssr36778 4 34893772 to 34893787 15 + TSS region transcription start site region 36778
Cga 4 34893779 to 34907370 13591 + protein coding gene glycoprotein hormones, alpha subunit
Tssr36779 4 34893794 to 34893816 22 + TSS region transcription start site region 36779
Tssr36780 4 34905149 to 34905158 9 + TSS region transcription start site region 36780
Platr9 4 34909789 to 34911481 1692 - lncRNA gene pluripotency associated transcript 9
Gm12361 4 34919134 to 34920517 1383 + pseudogene predicted gene 12361
Gm12362 4 34941008 to 34941349 341 - pseudogene predicted gene 12362
Cpgi14126 4 34941231 to 34941430 199 CpG island CpG island 14126
Mob3b 4 34949074 to 35157484 208410 - protein coding gene MOB kinase activator 3B
Tssr1136 4 34950665 to 34950669 4 - TSS region transcription start site region 1136
Tssr41209 4 34952456 to 34952464 8 - TSS region transcription start site region 41209
Gm12364 4 34962220 to 34966965 4745 + antisense lncRNA gene predicted gene 12364
D4Ertd628e 4 34978570 to 34978819 249 DNA segment DNA segment, Chr 4, ERATO Doi 628, expressed
Gm33620 4 34986545 to 35001497 14952 + lncRNA gene predicted gene, 33620
Flal3 4 35000000 to 37000000 2000000 QTL fatty liver accumulation QTL 3, females only
Tssr41210 4 35020015 to 35020026 11 - TSS region transcription start site region 41210
D4Mit39 4 35033181 to 35033352 171 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 39
Tssr41211 4 35035610 to 35035614 4 - TSS region transcription start site region 41211
Cpgi14127 4 35096403 to 35096903 500 CpG island CpG island 14127
Cpgi14128 4 35100078 to 35100357 279 CpG island CpG island 14128
Tssr41212 4 35113623 to 35113672 49 - TSS region transcription start site region 41212
Tssr41213 4 35125336 to 35125348 12 - TSS region transcription start site region 41213
Tssr41214 4 35130757 to 35130761 4 - TSS region transcription start site region 41214
Ifnk 4 35152056 to 35154005 1949 + protein coding gene interferon kappa
Cpgi14129 4 35155879 to 35157613 1734 CpG island CpG island 14129
Tssr41215 4 35157404 to 35157500 96 - TSS region transcription start site region 41215
Tssr41216 4 35158249 to 35158260 11 - TSS region transcription start site region 41216
C9orf72 4 35191282 to 35226135 34853 - protein coding gene C9orf72, member of C9orf72-SMCR8 complex
Gm12366 4 35202103 to 35202975 872 - pseudogene predicted gene 12366
Tssr41217 4 35206849 to 35206854 5 - TSS region transcription start site region 41217
Tssr41218 4 35211282 to 35211295 13 - TSS region transcription start site region 41218
Tssr36781 4 35224401 to 35224412 11 + TSS region transcription start site region 36781
Tssr41219 4 35225178 to 35225189 11 - TSS region transcription start site region 41219
Cpgi14130 4 35225184 to 35226608 1424 CpG island CpG island 14130
Tssr41220 4 35225199 to 35225207 8 - TSS region transcription start site region 41220
Tssr41221 4 35225789 to 35225857 68 - TSS region transcription start site region 41221
Gm12367 4 35225897 to 35262222 36325 + unclassified non-coding RNA gene predicted gene 12367
Tssr36782 4 35226200 to 35226221 21 + TSS region transcription start site region 36782
Tssr36783 4 35226223 to 35226242 19 + TSS region transcription start site region 36783
Tssr36784 4 35226871 to 35226875 4 + TSS region transcription start site region 36784
Gm18607 4 35320686 to 35321399 713 - pseudogene predicted gene, 18607
Gm33672 4 35323827 to 35329659 5832 - lncRNA gene predicted gene, 33672
Gm12368 4 35401058 to 35401491 433 + pseudogene predicted gene 12368
Gm12365 4 35436214 to 35436781 567 + pseudogene predicted gene 12365
Lingo2 4 35706647 to 36951747 1245100 - protein coding gene leucine rich repeat and Ig domain containing 2
Cpgi14131 4 35708377 to 35708724 347 CpG island CpG island 14131
Tssr41222 4 35795200 to 35795204 4 - TSS region transcription start site region 41222
Gm12369 4 36003241 to 36004146 905 - pseudogene predicted gene 12369
Tssr41223 4 36006004 to 36006007 3 - TSS region transcription start site region 41223
A330107A15Rik 4 36154093 to 36154583 490 unclassified gene RIKEN cDNA A330107A15 gene
Tssr41224 4 36321165 to 36321170 5 - TSS region transcription start site region 41224
Gm12370 4 36444308 to 36444884 576 + pseudogene predicted gene 12370
Mir876 4 36645373 to 36645453 80 - miRNA gene microRNA 876
Tssr41225 4 36654162 to 36654165 3 - TSS region transcription start site region 41225
Tssr41226 4 36664950 to 36664953 3 - TSS region transcription start site region 41226
Mir873b 4 36668510 to 36668586 76 + miRNA gene microRNA 873b
Mir873a 4 36668510 to 36668586 76 - miRNA gene microRNA 873a
Gm23314 4 36756048 to 36756154 106 + snRNA gene predicted gene, 23314
D4Mit194 4 36819216 to 36819361 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 194
Tssr41227 4 36856502 to 36856506 4 - TSS region transcription start site region 41227
Tssr41228 4 36936311 to 36936315 4 - TSS region transcription start site region 41228
Cpgi14132 4 36950226 to 36950957 731 CpG island CpG island 14132
Cpgi14133 4 36951146 to 36952100 954 CpG island CpG island 14133
Tssr41229 4 36951689 to 36951759 70 - TSS region transcription start site region 41229
Tssr36785 4 36952930 to 36952970 40 + TSS region transcription start site region 36785
Gm12371 4 36952966 to 36988032 35066 + lincRNA gene predicted gene 12371
Gm42269 4 37086049 to 37099185 13136 + lncRNA gene predicted gene, 42269
Gm12372 4 37139107 to 37139874 767 - pseudogene predicted gene 12372
D4Mit107 4 37171886 to 37172023 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 107
Rpl23a-ps6 4 37238708 to 37239175 467 - pseudogene ribosomal protein 23A, pseudogene 6
Gm12374 4 37294197 to 37332515 38318 + lincRNA gene predicted gene 12374
Gm22732 4 37297905 to 37298025 120 + snoRNA gene predicted gene, 22732