Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:34042828-34581288

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spaca1 4 34024872 to 34050067 25195 - protein coding gene sperm acrosome associated 1
Cpgi14118 4 34049670 to 34050282 612 CpG island CpG island 14118
Tssr41186 4 34050038 to 34050049 11 - TSS region transcription start site region 41186
Tssr41187 4 34050055 to 34050072 17 - TSS region transcription start site region 41187
Tssr41188 4 34050077 to 34050089 12 - TSS region transcription start site region 41188
Gm25623 4 34086126 to 34086233 107 + snRNA gene predicted gene, 25623
Tssr36762 4 34124937 to 34124943 6 + TSS region transcription start site region 36762
Gm12753 4 34130854 to 34134800 3946 + lincRNA gene predicted gene 12753
Tssr1133 4 34209163 to 34209166 3 - TSS region transcription start site region 1133
Gm46855 4 34282127 to 34282438 311 - pseudogene predicted gene, 46855
Gm33286 4 34307828 to 34316288 8460 + lncRNA gene predicted gene, 33286
Gm20764 4 34310975 to 34319792 8817 - protein coding gene predicted gene, 20764
Gm12751 4 34354043 to 34354423 380 + pseudogene predicted gene 12751
Gm46882 4 34365894 to 34371829 5935 - lncRNA gene predicted gene, 46882
Gm12752 4 34380171 to 34380981 810 - pseudogene predicted gene 12752
Tssr41189 4 34381082 to 34381083 1 - TSS region transcription start site region 41189
Gm12754 4 34389394 to 34389847 453 - pseudogene predicted gene 12754
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
D4Mit172 4 34395160 to 34395290 130 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 172
Alcp8 4 34395160 to 34395290 130 QTL alcohol preference locus 8, female specific
Alcp7 4 34395160 to 34395290 130 QTL alcohol preference locus 7, male specific
Gm23466 4 34434296 to 34434401 105 + unclassified non-coding RNA gene predicted gene, 23466
Tssr1134 4 34434458 to 34434459 1 - TSS region transcription start site region 1134
Gm12351 4 34457890 to 34458181 291 + pseudogene predicted gene 12351
Gm33434 4 34482884 to 34485591 2707 - lncRNA gene predicted gene, 33434
Tssr36763 4 34485734 to 34485766 32 + TSS region transcription start site region 36763
Tssr36764 4 34485769 to 34485780 11 + TSS region transcription start site region 36764
Tssr36765 4 34485782 to 34485797 15 + TSS region transcription start site region 36765
Gm12350 4 34485832 to 34486293 461 + pseudogene predicted gene 12350
Cpgi14119 4 34550417 to 34551707 1290 CpG island CpG island 14119
Tssr36766 4 34550587 to 34550662 75 + TSS region transcription start site region 36766
Tssr36767 4 34550677 to 34550688 11 + TSS region transcription start site region 36767
Tssr36768 4 34550900 to 34550916 16 + TSS region transcription start site region 36768
Tssr36769 4 34550918 to 34550929 11 + TSS region transcription start site region 36769
Tssr36770 4 34550931 to 34550945 14 + TSS region transcription start site region 36770
Akirin2 4 34550937 to 34566908 15971 + protein coding gene akirin 2
Tssr41190 4 34551437 to 34551447 10 - TSS region transcription start site region 41190
Orc3 4 34570796 to 34614944 44148 - protein coding gene origin recognition complex, subunit 3