Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:33495980-34124079

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq2 4 30343419 to 33824057 3480638 QTL open field activity QTL 2
Rngtt 4 33310311 to 33502614 192303 + protein coding gene RNA guanylyltransferase and 5'-phosphatase
Tssr41185 4 33513491 to 33513516 25 - TSS region transcription start site region 41185
Gm32893 4 33568248 to 33577843 9595 + lncRNA gene predicted gene, 32893
Gm32955 4 33602866 to 33629590 26724 + lncRNA gene predicted gene, 32955
Gm23304 4 33628841 to 33628961 120 - miRNA gene predicted gene, 23304
Gm24341 4 33681367 to 33681491 124 - snoRNA gene predicted gene, 24341
Gm33059 4 33780980 to 33839079 58099 + lncRNA gene predicted gene, 33059
Gm33008 4 33798991 to 33801048 2057 + lncRNA gene predicted gene, 33008
D4Mit94 4 33864887 to 33865030 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 94
D4Mit228 4 33893431 to 33893540 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 228
Gm33105 4 33893528 to 33904368 10840 - lncRNA gene predicted gene, 33105
D4Mit93 4 33905472 to 33905603 131 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 93
Cpgi14117 4 33923324 to 33925324 2000 CpG island CpG island 14117
Tssr36752 4 33923845 to 33923856 11 + TSS region transcription start site region 36752
Tssr36753 4 33924014 to 33924040 26 + TSS region transcription start site region 36753
Cnr1 4 33924593 to 33948831 24238 + protein coding gene cannabinoid receptor 1 (brain)
Tssr36754 4 33924636 to 33924651 15 + TSS region transcription start site region 36754
Tssr36755 4 33924921 to 33924990 69 + TSS region transcription start site region 36755
Tssr36756 4 33924991 to 33925012 21 + TSS region transcription start site region 36756
Tssr36757 4 33925032 to 33925047 15 + TSS region transcription start site region 36757
Tssr36758 4 33925076 to 33925090 14 + TSS region transcription start site region 36758
Tssr36759 4 33926375 to 33926384 9 + TSS region transcription start site region 36759
Tssr36760 4 33929586 to 33929590 4 + TSS region transcription start site region 36760
Tssr36761 4 33945514 to 33945519 5 + TSS region transcription start site region 36761
Gm22010 4 34006306 to 34006392 86 + snoRNA gene predicted gene, 22010
Spaca1 4 34024872 to 34050067 25195 - protein coding gene sperm acrosome associated 1
Cpgi14118 4 34049670 to 34050282 612 CpG island CpG island 14118
Tssr41186 4 34050038 to 34050049 11 - TSS region transcription start site region 41186
Tssr41187 4 34050055 to 34050072 17 - TSS region transcription start site region 41187
Tssr41188 4 34050077 to 34050089 12 - TSS region transcription start site region 41188
Gm25623 4 34086126 to 34086233 107 + snRNA gene predicted gene, 25623