Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:33445038-34655049

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq2 4 30343419 to 33824057 3480638 QTL open field activity QTL 2
Rngtt 4 33310311 to 33502614 192303 + protein coding gene RNA guanylyltransferase and 5'-phosphatase
Gm11935 4 33452491 to 33452889 398 - pseudogene predicted gene 11935
D4Mit137 4 33477813 to 33477953 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 137
Tssr41185 4 33513491 to 33513516 25 - TSS region transcription start site region 41185
Gm32893 4 33568248 to 33577843 9595 + lncRNA gene predicted gene, 32893
Gm32955 4 33602866 to 33629590 26724 + lncRNA gene predicted gene, 32955
Gm23304 4 33628841 to 33628961 120 - miRNA gene predicted gene, 23304
Gm24341 4 33681367 to 33681491 124 - snoRNA gene predicted gene, 24341
Gm33059 4 33780980 to 33839079 58099 + lncRNA gene predicted gene, 33059
Gm33008 4 33798991 to 33801048 2057 + lncRNA gene predicted gene, 33008
D4Mit94 4 33864887 to 33865030 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 94
D4Mit228 4 33893431 to 33893540 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 228
Gm33105 4 33893528 to 33904368 10840 - lncRNA gene predicted gene, 33105
D4Mit93 4 33905472 to 33905603 131 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 93
Cpgi14117 4 33923324 to 33925324 2000 CpG island CpG island 14117
Tssr36752 4 33923845 to 33923856 11 + TSS region transcription start site region 36752
Tssr36753 4 33924014 to 33924040 26 + TSS region transcription start site region 36753
Cnr1 4 33924593 to 33948831 24238 + protein coding gene cannabinoid receptor 1 (brain)
Tssr36754 4 33924636 to 33924651 15 + TSS region transcription start site region 36754
Tssr36755 4 33924921 to 33924990 69 + TSS region transcription start site region 36755
Tssr36756 4 33924991 to 33925012 21 + TSS region transcription start site region 36756
Tssr36757 4 33925032 to 33925047 15 + TSS region transcription start site region 36757
Tssr36758 4 33925076 to 33925090 14 + TSS region transcription start site region 36758
Tssr36759 4 33926375 to 33926384 9 + TSS region transcription start site region 36759
Tssr36760 4 33929586 to 33929590 4 + TSS region transcription start site region 36760
Tssr36761 4 33945514 to 33945519 5 + TSS region transcription start site region 36761
Gm22010 4 34006306 to 34006392 86 + snoRNA gene predicted gene, 22010
Spaca1 4 34024872 to 34050067 25195 - protein coding gene sperm acrosome associated 1
Cpgi14118 4 34049670 to 34050282 612 CpG island CpG island 14118
Tssr41186 4 34050038 to 34050049 11 - TSS region transcription start site region 41186
Tssr41187 4 34050055 to 34050072 17 - TSS region transcription start site region 41187
Tssr41188 4 34050077 to 34050089 12 - TSS region transcription start site region 41188
Gm25623 4 34086126 to 34086233 107 + snRNA gene predicted gene, 25623
Tssr36762 4 34124937 to 34124943 6 + TSS region transcription start site region 36762
Gm12753 4 34130854 to 34134800 3946 + lincRNA gene predicted gene 12753
Tssr1133 4 34209163 to 34209166 3 - TSS region transcription start site region 1133
Gm46855 4 34282127 to 34282438 311 - pseudogene predicted gene, 46855
Gm33286 4 34307828 to 34316288 8460 + lncRNA gene predicted gene, 33286
Gm20764 4 34310975 to 34319792 8817 - protein coding gene predicted gene, 20764
Gm12751 4 34354043 to 34354423 380 + pseudogene predicted gene 12751
Gm46882 4 34365894 to 34371829 5935 - lncRNA gene predicted gene, 46882
Gm12752 4 34380171 to 34380981 810 - pseudogene predicted gene 12752
Tssr41189 4 34381082 to 34381083 1 - TSS region transcription start site region 41189
Gm12754 4 34389394 to 34389847 453 - pseudogene predicted gene 12754
Alcp7 4 34395160 to 34395290 130 QTL alcohol preference locus 7, male specific
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
D4Mit172 4 34395160 to 34395290 130 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 172
Alcp8 4 34395160 to 34395290 130 QTL alcohol preference locus 8, female specific
Gm23466 4 34434296 to 34434401 105 + unclassified non-coding RNA gene predicted gene, 23466
Tssr1134 4 34434458 to 34434459 1 - TSS region transcription start site region 1134
Gm12351 4 34457890 to 34458181 291 + pseudogene predicted gene 12351
Gm33434 4 34482884 to 34485591 2707 - lncRNA gene predicted gene, 33434
Tssr36763 4 34485734 to 34485766 32 + TSS region transcription start site region 36763
Tssr36764 4 34485769 to 34485780 11 + TSS region transcription start site region 36764
Tssr36765 4 34485782 to 34485797 15 + TSS region transcription start site region 36765
Gm12350 4 34485832 to 34486293 461 + pseudogene predicted gene 12350
Cpgi14119 4 34550417 to 34551707 1290 CpG island CpG island 14119
Tssr36766 4 34550587 to 34550662 75 + TSS region transcription start site region 36766
Tssr36767 4 34550677 to 34550688 11 + TSS region transcription start site region 36767
Tssr36768 4 34550900 to 34550916 16 + TSS region transcription start site region 36768
Tssr36769 4 34550918 to 34550929 11 + TSS region transcription start site region 36769
Tssr36770 4 34550931 to 34550945 14 + TSS region transcription start site region 36770
Akirin2 4 34550937 to 34566908 15971 + protein coding gene akirin 2
Tssr41190 4 34551437 to 34551447 10 - TSS region transcription start site region 41190
Orc3 4 34570796 to 34614944 44148 - protein coding gene origin recognition complex, subunit 3
Tssr41191 4 34587048 to 34587088 40 - TSS region transcription start site region 41191
Tssr36771 4 34588505 to 34588508 3 + TSS region transcription start site region 36771
Cpgi14120 4 34614597 to 34615251 654 CpG island CpG island 14120
Tssr41192 4 34614886 to 34614931 45 - TSS region transcription start site region 41192
Tssr36772 4 34614940 to 34614996 56 + TSS region transcription start site region 36772
Rars2 4 34614957 to 34660167 45210 + protein coding gene arginyl-tRNA synthetase 2, mitochondrial