Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:33045610-37025614

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228 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq2 4 30343419 to 33824057 3480638 QTL open field activity QTL 2
Ube2j1 4 33031416 to 33052363 20947 + protein coding gene ubiquitin-conjugating enzyme E2J 1
Gm11931 4 33053838 to 33054284 446 - pseudogene predicted gene 11931
Tssr36737 4 33056339 to 33056340 1 + TSS region transcription start site region 36737
Gabrr2 4 33062999 to 33095865 32866 + protein coding gene gamma-aminobutyric acid (GABA) C receptor, subunit rho 2
Tssr36738 4 33063278 to 33063297 19 + TSS region transcription start site region 36738
Tssr41169 4 33072936 to 33072949 13 - TSS region transcription start site region 41169
Tssr36739 4 33077372 to 33077379 7 + TSS region transcription start site region 36739
Tssr36740 4 33077388 to 33077417 29 + TSS region transcription start site region 36740
Tssr36741 4 33077425 to 33077434 9 + TSS region transcription start site region 36741
Tssr36742 4 33132503 to 33132513 10 + TSS region transcription start site region 36742
Tssr36743 4 33132552 to 33132561 9 + TSS region transcription start site region 36743
Gabrr1 4 33132556 to 33163588 31032 + protein coding gene gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
Cpgi14111 4 33146935 to 33147164 229 CpG island CpG island 14111
Cpgi14112 4 33152193 to 33152598 405 CpG island CpG island 14112
Tssr41170 4 33172010 to 33172014 4 - TSS region transcription start site region 41170
Pm20d2 4 33174230 to 33189737 15507 - protein coding gene peptidase M20 domain containing 2
Cpgi14113 4 33188805 to 33189854 1049 CpG island CpG island 14113
Tssr41171 4 33189390 to 33189409 19 - TSS region transcription start site region 41171
Tssr41172 4 33189410 to 33189455 45 - TSS region transcription start site region 41172
Gm11930 4 33201764 to 33201953 189 + pseudogene predicted gene 11930
Cpgi14114 4 33208984 to 33209831 847 CpG island CpG island 14114
Srsf12 4 33208991 to 33233340 24349 + protein coding gene serine/arginine-rich splicing factor 12
Tssr36744 4 33209237 to 33209254 17 + TSS region transcription start site region 36744
Tssr36745 4 33209259 to 33209319 60 + TSS region transcription start site region 36745
D4Ertd199e 4 33230300 to 33230534 234 DNA segment DNA segment, Chr 4, ERATO Doi 199, expressed
Pnrc1 4 33245423 to 33248787 3364 - protein coding gene proline-rich nuclear receptor coactivator 1
Tssr41173 4 33245943 to 33246009 66 - TSS region transcription start site region 41173
Tssr41174 4 33246166 to 33246213 47 - TSS region transcription start site region 41174
Tssr41175 4 33246456 to 33246484 28 - TSS region transcription start site region 41175
Cpgi14115 4 33247397 to 33248973 1576 CpG island CpG island 14115
Tssr41176 4 33247544 to 33247563 19 - TSS region transcription start site region 41176
Tssr41177 4 33247573 to 33247599 26 - TSS region transcription start site region 41177
Tssr36746 4 33247926 to 33247999 73 + TSS region transcription start site region 36746
Tssr41178 4 33248015 to 33248027 12 - TSS region transcription start site region 41178
Tssr41179 4 33248483 to 33248489 6 - TSS region transcription start site region 41179
Tssr41180 4 33248500 to 33248518 18 - TSS region transcription start site region 41180
Tssr36747 4 33248663 to 33248683 20 + TSS region transcription start site region 36747
Tssr41181 4 33248723 to 33248752 29 - TSS region transcription start site region 41181
Tssr1132 4 33260563 to 33260569 6 + TSS region transcription start site region 1132
Tssr41182 4 33290094 to 33290102 8 - TSS region transcription start site region 41182
Tssr41183 4 33290107 to 33290119 12 - TSS region transcription start site region 41183
Tssr41184 4 33290133 to 33290169 36 - TSS region transcription start site region 41184
D4Mit294 4 33297537 to 33297654 117 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 294
Gm11934 4 33303569 to 33310137 6568 - unclassified non-coding RNA gene predicted gene 11934
Cpgi14116 4 33310167 to 33310744 577 CpG island CpG island 14116
Tssr36748 4 33310306 to 33310387 81 + TSS region transcription start site region 36748
Rngtt 4 33310311 to 33502614 192303 + protein coding gene RNA guanylyltransferase and 5'-phosphatase
Tssr36749 4 33310390 to 33310403 13 + TSS region transcription start site region 36749
Tssr36750 4 33342535 to 33342540 5 + TSS region transcription start site region 36750
Tssr36751 4 33350713 to 33350718 5 + TSS region transcription start site region 36751
D530034E23Rik 4 33402103 to 33402707 604 unclassified gene RIKEN cDNA D530034E23 gene
Mir8118 4 33438081 to 33438209 128 + miRNA gene microRNA 8118
Gm11935 4 33452491 to 33452889 398 - pseudogene predicted gene 11935
D4Mit137 4 33477813 to 33477953 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 137
Tssr41185 4 33513491 to 33513516 25 - TSS region transcription start site region 41185
Gm32893 4 33568248 to 33577843 9595 + lncRNA gene predicted gene, 32893
Gm32955 4 33602866 to 33629590 26724 + lncRNA gene predicted gene, 32955
Gm23304 4 33628841 to 33628961 120 - miRNA gene predicted gene, 23304
Gm24341 4 33681367 to 33681491 124 - snoRNA gene predicted gene, 24341
Gm33059 4 33780980 to 33839079 58099 + lncRNA gene predicted gene, 33059
Gm33008 4 33798991 to 33801048 2057 + lncRNA gene predicted gene, 33008
D4Mit94 4 33864887 to 33865030 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 94
D4Mit228 4 33893431 to 33893540 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 228
Gm33105 4 33893528 to 33904368 10840 - lncRNA gene predicted gene, 33105
D4Mit93 4 33905472 to 33905603 131 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 93
Cpgi14117 4 33923324 to 33925324 2000 CpG island CpG island 14117
Tssr36752 4 33923845 to 33923856 11 + TSS region transcription start site region 36752
Tssr36753 4 33924014 to 33924040 26 + TSS region transcription start site region 36753
Cnr1 4 33924593 to 33948831 24238 + protein coding gene cannabinoid receptor 1 (brain)
Tssr36754 4 33924636 to 33924651 15 + TSS region transcription start site region 36754
Tssr36755 4 33924921 to 33924990 69 + TSS region transcription start site region 36755
Tssr36756 4 33924991 to 33925012 21 + TSS region transcription start site region 36756
Tssr36757 4 33925032 to 33925047 15 + TSS region transcription start site region 36757
Tssr36758 4 33925076 to 33925090 14 + TSS region transcription start site region 36758
Tssr36759 4 33926375 to 33926384 9 + TSS region transcription start site region 36759
Tssr36760 4 33929586 to 33929590 4 + TSS region transcription start site region 36760
Tssr36761 4 33945514 to 33945519 5 + TSS region transcription start site region 36761
Gm22010 4 34006306 to 34006392 86 + snoRNA gene predicted gene, 22010
Spaca1 4 34024872 to 34050067 25195 - protein coding gene sperm acrosome associated 1
Cpgi14118 4 34049670 to 34050282 612 CpG island CpG island 14118
Tssr41186 4 34050038 to 34050049 11 - TSS region transcription start site region 41186
Tssr41187 4 34050055 to 34050072 17 - TSS region transcription start site region 41187
Tssr41188 4 34050077 to 34050089 12 - TSS region transcription start site region 41188
Gm25623 4 34086126 to 34086233 107 + snRNA gene predicted gene, 25623
Tssr36762 4 34124937 to 34124943 6 + TSS region transcription start site region 36762
Gm12753 4 34130854 to 34134800 3946 + lincRNA gene predicted gene 12753
Tssr1133 4 34209163 to 34209166 3 - TSS region transcription start site region 1133
Gm46855 4 34282127 to 34282438 311 - pseudogene predicted gene, 46855
Gm33286 4 34307828 to 34316288 8460 + lncRNA gene predicted gene, 33286
Gm20764 4 34310975 to 34319792 8817 - protein coding gene predicted gene, 20764
Gm12751 4 34354043 to 34354423 380 + pseudogene predicted gene 12751
Gm46882 4 34365894 to 34371829 5935 - lncRNA gene predicted gene, 46882
Gm12752 4 34380171 to 34380981 810 - pseudogene predicted gene 12752
Tssr41189 4 34381082 to 34381083 1 - TSS region transcription start site region 41189
Gm12754 4 34389394 to 34389847 453 - pseudogene predicted gene 12754
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
Alcp8 4 34395160 to 34395290 130 QTL alcohol preference locus 8, female specific
D4Mit172 4 34395160 to 34395290 130 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 172
Alcp7 4 34395160 to 34395290 130 QTL alcohol preference locus 7, male specific
Gm23466 4 34434296 to 34434401 105 + unclassified non-coding RNA gene predicted gene, 23466
Tssr1134 4 34434458 to 34434459 1 - TSS region transcription start site region 1134
Gm12351 4 34457890 to 34458181 291 + pseudogene predicted gene 12351
Gm33434 4 34482884 to 34485591 2707 - lncRNA gene predicted gene, 33434
Tssr36763 4 34485734 to 34485766 32 + TSS region transcription start site region 36763
Tssr36764 4 34485769 to 34485780 11 + TSS region transcription start site region 36764
Tssr36765 4 34485782 to 34485797 15 + TSS region transcription start site region 36765
Gm12350 4 34485832 to 34486293 461 + pseudogene predicted gene 12350
Cpgi14119 4 34550417 to 34551707 1290 CpG island CpG island 14119
Tssr36766 4 34550587 to 34550662 75 + TSS region transcription start site region 36766
Tssr36767 4 34550677 to 34550688 11 + TSS region transcription start site region 36767
Tssr36768 4 34550900 to 34550916 16 + TSS region transcription start site region 36768
Tssr36769 4 34550918 to 34550929 11 + TSS region transcription start site region 36769
Tssr36770 4 34550931 to 34550945 14 + TSS region transcription start site region 36770
Akirin2 4 34550937 to 34566908 15971 + protein coding gene akirin 2
Tssr41190 4 34551437 to 34551447 10 - TSS region transcription start site region 41190
Orc3 4 34570796 to 34614944 44148 - protein coding gene origin recognition complex, subunit 3
Tssr41191 4 34587048 to 34587088 40 - TSS region transcription start site region 41191
Tssr36771 4 34588505 to 34588508 3 + TSS region transcription start site region 36771
Cpgi14120 4 34614597 to 34615251 654 CpG island CpG island 14120
Tssr41192 4 34614886 to 34614931 45 - TSS region transcription start site region 41192
Tssr36772 4 34614940 to 34614996 56 + TSS region transcription start site region 36772
Rars2 4 34614957 to 34660167 45210 + protein coding gene arginyl-tRNA synthetase 2, mitochondrial
Slc35a1 4 34663257 to 34687438 24181 - protein coding gene solute carrier family 35 (CMP-sialic acid transporter), member 1
Gm22849 4 34683879 to 34684185 306 + unclassified non-coding RNA gene predicted gene, 22849
Cpgi14121 4 34686778 to 34687573 795 CpG island CpG island 14121
Tssr41193 4 34687262 to 34687309 47 - TSS region transcription start site region 41193
Tssr41194 4 34687312 to 34687342 30 - TSS region transcription start site region 41194
Tssr41195 4 34687347 to 34687375 28 - TSS region transcription start site region 41195
Tssr41196 4 34687382 to 34687452 70 - TSS region transcription start site region 41196
Tssr41197 4 34687457 to 34687464 7 - TSS region transcription start site region 41197
Cfap206 4 34688559 to 34730206 41647 - protein coding gene cilia and flagella associated protein 206
Cpgi14122 4 34729872 to 34730326 454 CpG island CpG island 14122
Tssr1135 4 34730120 to 34730127 7 - TSS region transcription start site region 1135
Tssr41198 4 34730142 to 34730153 11 - TSS region transcription start site region 41198
Tssr41199 4 34730157 to 34730232 75 - TSS region transcription start site region 41199
Gm136 4 34743788 to 34756259 12471 - protein coding gene predicted gene 136
Tssr41200 4 34756195 to 34756201 6 - TSS region transcription start site region 41200
Tssr41201 4 34756222 to 34756233 11 - TSS region transcription start site region 41201
Tssr41202 4 34756234 to 34756267 33 - TSS region transcription start site region 41202
Smim8 4 34768664 to 34778396 9732 - protein coding gene small integral membrane protein 8
Cpgi14123 4 34778219 to 34778532 313 CpG island CpG island 14123
Tssr41203 4 34778322 to 34778381 59 - TSS region transcription start site region 41203
Zfp292 4 34803113 to 34882960 79847 - protein coding gene zinc finger protein 292
Tssr41204 4 34805884 to 34805887 3 - TSS region transcription start site region 41204
Tssr41205 4 34806307 to 34806348 41 - TSS region transcription start site region 41205
Tssr41206 4 34806927 to 34806975 48 - TSS region transcription start site region 41206
Tssr41207 4 34834862 to 34834865 3 - TSS region transcription start site region 41207
Gm12363 4 34842985 to 34843652 667 + pseudogene predicted gene 12363
2810040C05Rik 4 34855496 to 34856850 1354 unclassified gene RIKEN cDNA 2810040C05 gene
Cpgi14124 4 34882325 to 34883275 950 CpG island CpG island 14124
Tssr41208 4 34882919 to 34882964 45 - TSS region transcription start site region 41208
Cpgi14125 4 34886537 to 34887140 603 CpG island CpG island 14125
Tssr36773 4 34886642 to 34886654 12 + TSS region transcription start site region 36773
Tssr36774 4 34886688 to 34886712 24 + TSS region transcription start site region 36774
A330027G23Rik 4 34886711 to 34889905 3194 unclassified gene RIKEN cDNA A330027G23 gene
D4Mit41 4 34892515 to 34892635 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 41
Nbwa2 4 34892515 to 34892635 120 QTL NZB and NZW autoimmunity 2
D4Nds3 4 34892543 to 34892680 137 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 3
Tssr36775 4 34893729 to 34893738 9 + TSS region transcription start site region 36775
Tssr36776 4 34893751 to 34893759 8 + TSS region transcription start site region 36776
Tssr36777 4 34893761 to 34893766 5 + TSS region transcription start site region 36777
Tssr36778 4 34893772 to 34893787 15 + TSS region transcription start site region 36778
Cga 4 34893779 to 34907370 13591 + protein coding gene glycoprotein hormones, alpha subunit
Tssr36779 4 34893794 to 34893816 22 + TSS region transcription start site region 36779
Tssr36780 4 34905149 to 34905158 9 + TSS region transcription start site region 36780
Platr9 4 34909789 to 34911481 1692 - lncRNA gene pluripotency associated transcript 9
Gm12361 4 34919134 to 34920517 1383 + pseudogene predicted gene 12361
Gm12362 4 34941008 to 34941349 341 - pseudogene predicted gene 12362
Cpgi14126 4 34941231 to 34941430 199 CpG island CpG island 14126
Mob3b 4 34949074 to 35157484 208410 - protein coding gene MOB kinase activator 3B
Tssr1136 4 34950665 to 34950669 4 - TSS region transcription start site region 1136
Tssr41209 4 34952456 to 34952464 8 - TSS region transcription start site region 41209
Gm12364 4 34962220 to 34966965 4745 + antisense lncRNA gene predicted gene 12364
D4Ertd628e 4 34978570 to 34978819 249 DNA segment DNA segment, Chr 4, ERATO Doi 628, expressed
Gm33620 4 34986545 to 35001497 14952 + lncRNA gene predicted gene, 33620
Flal3 4 35000000 to 37000000 2000000 QTL fatty liver accumulation QTL 3, females only
Tssr41210 4 35020015 to 35020026 11 - TSS region transcription start site region 41210
D4Mit39 4 35033181 to 35033352 171 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 39
Tssr41211 4 35035610 to 35035614 4 - TSS region transcription start site region 41211
Cpgi14127 4 35096403 to 35096903 500 CpG island CpG island 14127
Cpgi14128 4 35100078 to 35100357 279 CpG island CpG island 14128
Tssr41212 4 35113623 to 35113672 49 - TSS region transcription start site region 41212
Tssr41213 4 35125336 to 35125348 12 - TSS region transcription start site region 41213
Tssr41214 4 35130757 to 35130761 4 - TSS region transcription start site region 41214
Ifnk 4 35152056 to 35154005 1949 + protein coding gene interferon kappa
Cpgi14129 4 35155879 to 35157613 1734 CpG island CpG island 14129
Tssr41215 4 35157404 to 35157500 96 - TSS region transcription start site region 41215
Tssr41216 4 35158249 to 35158260 11 - TSS region transcription start site region 41216
C9orf72 4 35191282 to 35226135 34853 - protein coding gene C9orf72, member of C9orf72-SMCR8 complex
Gm12366 4 35202103 to 35202975 872 - pseudogene predicted gene 12366
Tssr41217 4 35206849 to 35206854 5 - TSS region transcription start site region 41217
Tssr41218 4 35211282 to 35211295 13 - TSS region transcription start site region 41218
Tssr36781 4 35224401 to 35224412 11 + TSS region transcription start site region 36781
Tssr41219 4 35225178 to 35225189 11 - TSS region transcription start site region 41219
Cpgi14130 4 35225184 to 35226608 1424 CpG island CpG island 14130
Tssr41220 4 35225199 to 35225207 8 - TSS region transcription start site region 41220
Tssr41221 4 35225789 to 35225857 68 - TSS region transcription start site region 41221
Gm12367 4 35225897 to 35262222 36325 + unclassified non-coding RNA gene predicted gene 12367
Tssr36782 4 35226200 to 35226221 21 + TSS region transcription start site region 36782