Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:32998500-33498518

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rragd 4 32983037 to 33022180 39143 + protein coding gene Ras-related GTP binding D
Gm11943 4 33001995 to 33002321 326 - pseudogene predicted gene 11943
4933421O10Rik 4 33027142 to 33031323 4181 - lncRNA gene RIKEN cDNA 4933421O10 gene
Cpgi14110 4 33030637 to 33032027 1390 CpG island CpG island 14110
Tssr41166 4 33031254 to 33031272 18 - TSS region transcription start site region 41166
Tssr41167 4 33031282 to 33031294 12 - TSS region transcription start site region 41167
Tssr41168 4 33031295 to 33031354 59 - TSS region transcription start site region 41168
Tssr36732 4 33031371 to 33031524 153 + TSS region transcription start site region 36732
Ube2j1 4 33031416 to 33052363 20947 + protein coding gene ubiquitin-conjugating enzyme E2J 1
Tssr36733 4 33031527 to 33031556 29 + TSS region transcription start site region 36733
Tssr36734 4 33031724 to 33031740 16 + TSS region transcription start site region 36734
Tssr36735 4 33031748 to 33031765 17 + TSS region transcription start site region 36735
Tssr36736 4 33045174 to 33045188 14 + TSS region transcription start site region 36736
Gm11931 4 33053838 to 33054284 446 - pseudogene predicted gene 11931
Tssr36737 4 33056339 to 33056340 1 + TSS region transcription start site region 36737
Gabrr2 4 33062999 to 33095865 32866 + protein coding gene gamma-aminobutyric acid (GABA) C receptor, subunit rho 2
Tssr36738 4 33063278 to 33063297 19 + TSS region transcription start site region 36738
Tssr41169 4 33072936 to 33072949 13 - TSS region transcription start site region 41169
Tssr36739 4 33077372 to 33077379 7 + TSS region transcription start site region 36739
Tssr36740 4 33077388 to 33077417 29 + TSS region transcription start site region 36740
Tssr36741 4 33077425 to 33077434 9 + TSS region transcription start site region 36741
Tssr36742 4 33132503 to 33132513 10 + TSS region transcription start site region 36742
Tssr36743 4 33132552 to 33132561 9 + TSS region transcription start site region 36743
Gabrr1 4 33132556 to 33163588 31032 + protein coding gene gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
Cpgi14111 4 33146935 to 33147164 229 CpG island CpG island 14111
Cpgi14112 4 33152193 to 33152598 405 CpG island CpG island 14112
Tssr41170 4 33172010 to 33172014 4 - TSS region transcription start site region 41170
Pm20d2 4 33174230 to 33189737 15507 - protein coding gene peptidase M20 domain containing 2
Cpgi14113 4 33188805 to 33189854 1049 CpG island CpG island 14113
Tssr41171 4 33189390 to 33189409 19 - TSS region transcription start site region 41171
Tssr41172 4 33189410 to 33189455 45 - TSS region transcription start site region 41172
Gm11930 4 33201764 to 33201953 189 + pseudogene predicted gene 11930
Cpgi14114 4 33208984 to 33209831 847 CpG island CpG island 14114
Srsf12 4 33208991 to 33233340 24349 + protein coding gene serine/arginine-rich splicing factor 12
Tssr36744 4 33209237 to 33209254 17 + TSS region transcription start site region 36744
Tssr36745 4 33209259 to 33209319 60 + TSS region transcription start site region 36745
D4Ertd199e 4 33230300 to 33230534 234 DNA segment DNA segment, Chr 4, ERATO Doi 199, expressed
Pnrc1 4 33245423 to 33248787 3364 - protein coding gene proline-rich nuclear receptor coactivator 1
Tssr41173 4 33245943 to 33246009 66 - TSS region transcription start site region 41173
Tssr41174 4 33246166 to 33246213 47 - TSS region transcription start site region 41174
Tssr41175 4 33246456 to 33246484 28 - TSS region transcription start site region 41175
Cpgi14115 4 33247397 to 33248973 1576 CpG island CpG island 14115
Tssr41176 4 33247544 to 33247563 19 - TSS region transcription start site region 41176
Tssr41177 4 33247573 to 33247599 26 - TSS region transcription start site region 41177
Tssr36746 4 33247926 to 33247999 73 + TSS region transcription start site region 36746
Tssr41178 4 33248015 to 33248027 12 - TSS region transcription start site region 41178
Tssr41179 4 33248483 to 33248489 6 - TSS region transcription start site region 41179
Tssr41180 4 33248500 to 33248518 18 - TSS region transcription start site region 41180
Tssr36747 4 33248663 to 33248683 20 + TSS region transcription start site region 36747
Tssr41181 4 33248723 to 33248752 29 - TSS region transcription start site region 41181
Tssr1132 4 33260563 to 33260569 6 + TSS region transcription start site region 1132
Tssr41182 4 33290094 to 33290102 8 - TSS region transcription start site region 41182
Tssr41183 4 33290107 to 33290119 12 - TSS region transcription start site region 41183
Tssr41184 4 33290133 to 33290169 36 - TSS region transcription start site region 41184
D4Mit294 4 33297537 to 33297654 117 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 294
Gm11934 4 33303569 to 33310137 6568 - unclassified non-coding RNA gene predicted gene 11934
Cpgi14116 4 33310167 to 33310744 577 CpG island CpG island 14116
Tssr36748 4 33310306 to 33310387 81 + TSS region transcription start site region 36748
Rngtt 4 33310311 to 33502614 192303 + protein coding gene RNA guanylyltransferase and 5'-phosphatase
Tssr36749 4 33310390 to 33310403 13 + TSS region transcription start site region 36749
Tssr36750 4 33342535 to 33342540 5 + TSS region transcription start site region 36750
Tssr36751 4 33350713 to 33350718 5 + TSS region transcription start site region 36751
D530034E23Rik 4 33402103 to 33402707 604 unclassified gene RIKEN cDNA D530034E23 gene
Mir8118 4 33438081 to 33438209 128 + miRNA gene microRNA 8118
Gm11935 4 33452491 to 33452889 398 - pseudogene predicted gene 11935
D4Mit137 4 33477813 to 33477953 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 137