Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:32188278-33938297

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215 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq2 4 30343419 to 33824057 3480638 QTL open field activity QTL 2
Gm11929 4 32207148 to 32208092 944 + pseudogene predicted gene 11929
Tssr36666 4 32220136 to 32220140 4 + TSS region transcription start site region 36666
n-TGccc3 4 32230250 to 32230320 70 + tRNA gene nuclear encoded tRNA glycine 3 (anticodon CCC)
Cpgi14100 4 32238159 to 32240358 2199 CpG island CpG island 14100
Tssr36667 4 32238470 to 32238493 23 + TSS region transcription start site region 36667
Tssr36668 4 32238713 to 32238802 89 + TSS region transcription start site region 36668
Bach2 4 32238804 to 32586108 347304 + protein coding gene BTB and CNC homology, basic leucine zipper transcription factor 2
Tssr36669 4 32238883 to 32238890 7 + TSS region transcription start site region 36669
Tssr36670 4 32238935 to 32238946 11 + TSS region transcription start site region 36670
Tssr36671 4 32238953 to 32238964 11 + TSS region transcription start site region 36671
Tssr36672 4 32238980 to 32238996 16 + TSS region transcription start site region 36672
Tssr41135 4 32239332 to 32239348 16 - TSS region transcription start site region 41135
Tssr36673 4 32239423 to 32239443 20 + TSS region transcription start site region 36673
Tssr36674 4 32239449 to 32239470 21 + TSS region transcription start site region 36674
Tssr41136 4 32239953 to 32239964 11 - TSS region transcription start site region 41136
Tssr41137 4 32239992 to 32239998 6 - TSS region transcription start site region 41137
Tssr36675 4 32240470 to 32240474 4 + TSS region transcription start site region 36675
Tssr41138 4 32241242 to 32241253 11 - TSS region transcription start site region 41138
Tssr36676 4 32247757 to 32247764 7 + TSS region transcription start site region 36676
Tssr41139 4 32248338 to 32248341 3 - TSS region transcription start site region 41139
Tssr36677 4 32248536 to 32248557 21 + TSS region transcription start site region 36677
Tssr36678 4 32249273 to 32249310 37 + TSS region transcription start site region 36678
Tssr36679 4 32249385 to 32249420 35 + TSS region transcription start site region 36679
Tssr36680 4 32249421 to 32249428 7 + TSS region transcription start site region 36680
Tssr41140 4 32250353 to 32250359 6 - TSS region transcription start site region 41140
Tssr36681 4 32250574 to 32250589 15 + TSS region transcription start site region 36681
Tssr41141 4 32250685 to 32250695 10 - TSS region transcription start site region 41141
Tssr41142 4 32250731 to 32250743 12 - TSS region transcription start site region 41142
Bach2it1 4 32251761 to 32265835 14074 + sense intronic lncRNA gene BTB and CNC homology 2, intronic transcript 1
Tssr41143 4 32251859 to 32251869 10 - TSS region transcription start site region 41143
Tssr36682 4 32252260 to 32252288 28 + TSS region transcription start site region 36682
Tssr36683 4 32252536 to 32252543 7 + TSS region transcription start site region 36683
Tssr41144 4 32255456 to 32255462 6 - TSS region transcription start site region 41144
Tssr41145 4 32258153 to 32258165 12 - TSS region transcription start site region 41145
Tssr36684 4 32258662 to 32258674 12 + TSS region transcription start site region 36684
Tssr41146 4 32263147 to 32263162 15 - TSS region transcription start site region 41146
Tssr36685 4 32263880 to 32263893 13 + TSS region transcription start site region 36685
Tssr41147 4 32268069 to 32268107 38 - TSS region transcription start site region 41147
Tssr36686 4 32268318 to 32268348 30 + TSS region transcription start site region 36686
Tssr41148 4 32280692 to 32280706 14 - TSS region transcription start site region 41148
D4Mit267 4 32282644 to 32282758 114 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 267
Tssr41149 4 32291457 to 32291470 13 - TSS region transcription start site region 41149
Tssr36687 4 32291705 to 32291710 5 + TSS region transcription start site region 36687
Tssr36688 4 32291773 to 32291782 9 + TSS region transcription start site region 36688
Tssr36689 4 32291783 to 32291799 16 + TSS region transcription start site region 36689
Tssr36690 4 32313075 to 32313082 7 + TSS region transcription start site region 36690
Tssr41150 4 32335639 to 32335646 7 - TSS region transcription start site region 41150
Tssr36691 4 32335932 to 32335935 3 + TSS region transcription start site region 36691
Tssr36692 4 32335944 to 32335960 16 + TSS region transcription start site region 36692
Tssr36693 4 32335963 to 32335974 11 + TSS region transcription start site region 36693
Tssr36694 4 32336028 to 32336035 7 + TSS region transcription start site region 36694
Tssr36695 4 32336039 to 32336046 7 + TSS region transcription start site region 36695
Tssr41151 4 32343746 to 32343755 9 - TSS region transcription start site region 41151
Tssr41152 4 32343817 to 32343829 12 - TSS region transcription start site region 41152
Tssr41153 4 32351431 to 32351440 9 - TSS region transcription start site region 41153
Tssr36696 4 32353385 to 32353423 38 + TSS region transcription start site region 36696
Tssr41154 4 32363435 to 32363446 11 - TSS region transcription start site region 41154
Tssr36697 4 32363934 to 32363942 8 + TSS region transcription start site region 36697
Tssr36698 4 32363944 to 32363954 10 + TSS region transcription start site region 36698
Tssr41155 4 32375158 to 32375166 8 - TSS region transcription start site region 41155
Tssr41156 4 32375202 to 32375213 11 - TSS region transcription start site region 41156
Tssr36699 4 32376259 to 32376283 24 + TSS region transcription start site region 36699
Tssr41157 4 32406080 to 32406083 3 - TSS region transcription start site region 41157
Tssr36700 4 32415578 to 32415582 4 + TSS region transcription start site region 36700
Tssr36701 4 32424736 to 32424747 11 + TSS region transcription start site region 36701
Tssr36702 4 32424753 to 32424774 21 + TSS region transcription start site region 36702
Tssr41158 4 32425184 to 32425195 11 - TSS region transcription start site region 41158
Tssr36703 4 32425229 to 32425239 10 + TSS region transcription start site region 36703
Tssr36704 4 32426686 to 32426699 13 + TSS region transcription start site region 36704
Tssr41159 4 32442008 to 32442010 2 - TSS region transcription start site region 41159
Tssr36705 4 32445528 to 32445533 5 + TSS region transcription start site region 36705
Cpgi14101 4 32481377 to 32481636 259 CpG island CpG island 14101
Gm24371 4 32514787 to 32515053 266 + unclassified non-coding RNA gene predicted gene, 24371
Tssr36706 4 32527090 to 32527113 23 + TSS region transcription start site region 36706
Bach2os 4 32559680 to 32571662 11982 - antisense lncRNA gene BTB and CNC homology 2, opposite strand
Tssr41160 4 32571663 to 32571686 23 - TSS region transcription start site region 41160
Gja10 4 32600865 to 32602382 1517 - protein coding gene gap junction protein, alpha 10
Gm11933 4 32611351 to 32611725 374 + pseudogene predicted gene 11933
Cpgi14102 4 32614985 to 32616015 1030 CpG island CpG island 14102
Tssr36707 4 32615428 to 32615468 40 + TSS region transcription start site region 36707
Casp8ap2 4 32615470 to 32653271 37801 + protein coding gene caspase 8 associated protein 2
Tssr36708 4 32615477 to 32615487 10 + TSS region transcription start site region 36708
Tssr36709 4 32615489 to 32615505 16 + TSS region transcription start site region 36709
A130074J08Rik 4 32617499 to 32620659 3160 unclassified gene RIKEN cDNA A130074J08 gene
Tssr36710 4 32623985 to 32623989 4 + TSS region transcription start site region 36710
Tssr36711 4 32626872 to 32626891 19 + TSS region transcription start site region 36711
Tssr1131 4 32652768 to 32652785 17 + TSS region transcription start site region 1131
Gm11936 4 32655929 to 32656088 159 - pseudogene predicted gene 11936
Cpgi14103 4 32656706 to 32657622 916 CpG island CpG island 14103
Tssr36712 4 32657107 to 32657166 59 + TSS region transcription start site region 36712
Mdn1 4 32657119 to 32775217 118098 + protein coding gene midasin AAA ATPase 1
Tssr36713 4 32657184 to 32657194 10 + TSS region transcription start site region 36713
Tssr36714 4 32672547 to 32672559 12 + TSS region transcription start site region 36714
Tssr36715 4 32723003 to 32723016 13 + TSS region transcription start site region 36715
Tssr36716 4 32723042 to 32723051 9 + TSS region transcription start site region 36716
Tssr36717 4 32733113 to 32733118 5 + TSS region transcription start site region 36717
Tssr36718 4 32750691 to 32750695 4 + TSS region transcription start site region 36718
Tssr36719 4 32754429 to 32754442 13 + TSS region transcription start site region 36719
Tssr36720 4 32759111 to 32759123 12 + TSS region transcription start site region 36720
Tssr36721 4 32768331 to 32768345 14 + TSS region transcription start site region 36721
Gm42267 4 32791267 to 32792684 1417 - protein coding gene predicted gene, 42267
Cpgi14104 4 32799899 to 32800587 688 CpG island CpG island 14104
Tssr36722 4 32800246 to 32800289 43 + TSS region transcription start site region 36722
Lyrm2 4 32800253 to 32801559 1306 + protein coding gene LYR motif containing 2
Ankrd6 4 32804035 to 32950841 146806 - protein coding gene ankyrin repeat domain 6
Cpgi14105 4 32864134 to 32864583 449 CpG island CpG island 14105
Tssr41161 4 32864600 to 32864616 16 - TSS region transcription start site region 41161
Gm11941 4 32892686 to 32893295 609 + pseudogene predicted gene 11941
Tssr41162 4 32923390 to 32923436 46 - TSS region transcription start site region 41162
Tssr41163 4 32923517 to 32923530 13 - TSS region transcription start site region 41163
Cpgi14106 4 32950353 to 32951364 1011 CpG island CpG island 14106
Tssr41164 4 32950813 to 32950866 53 - TSS region transcription start site region 41164
Cpgi14107 4 32951639 to 32951930 291 CpG island CpG island 14107
Cpgi14108 4 32964736 to 32964962 226 CpG island CpG island 14108
Tssr36723 4 32964767 to 32964818 51 + TSS region transcription start site region 36723
Gm11942 4 32964888 to 32965232 344 + pseudogene predicted gene 11942
Cpgi14109 4 32982833 to 32984078 1245 CpG island CpG island 14109
Tssr36724 4 32982983 to 32983003 20 + TSS region transcription start site region 36724
Tssr36725 4 32983008 to 32983039 31 + TSS region transcription start site region 36725
Rragd 4 32983037 to 33022180 39143 + protein coding gene Ras-related GTP binding D
Tssr36726 4 32983283 to 32983308 25 + TSS region transcription start site region 36726
Tssr36727 4 32983311 to 32983339 28 + TSS region transcription start site region 36727
Tssr36728 4 32983359 to 32983400 41 + TSS region transcription start site region 36728
Tssr36729 4 32983417 to 32983428 11 + TSS region transcription start site region 36729
Tssr36730 4 32983494 to 32983503 9 + TSS region transcription start site region 36730
Tssr36731 4 32983523 to 32983534 11 + TSS region transcription start site region 36731
Tssr41165 4 32987062 to 32987103 41 - TSS region transcription start site region 41165
Gm11943 4 33001995 to 33002321 326 - pseudogene predicted gene 11943
4933421O10Rik 4 33027142 to 33031323 4181 - lncRNA gene RIKEN cDNA 4933421O10 gene
Cpgi14110 4 33030637 to 33032027 1390 CpG island CpG island 14110
Tssr41166 4 33031254 to 33031272 18 - TSS region transcription start site region 41166
Tssr41167 4 33031282 to 33031294 12 - TSS region transcription start site region 41167
Tssr41168 4 33031295 to 33031354 59 - TSS region transcription start site region 41168
Tssr36732 4 33031371 to 33031524 153 + TSS region transcription start site region 36732
Ube2j1 4 33031416 to 33052363 20947 + protein coding gene ubiquitin-conjugating enzyme E2J 1
Tssr36733 4 33031527 to 33031556 29 + TSS region transcription start site region 36733
Tssr36734 4 33031724 to 33031740 16 + TSS region transcription start site region 36734
Tssr36735 4 33031748 to 33031765 17 + TSS region transcription start site region 36735
Tssr36736 4 33045174 to 33045188 14 + TSS region transcription start site region 36736
Gm11931 4 33053838 to 33054284 446 - pseudogene predicted gene 11931
Tssr36737 4 33056339 to 33056340 1 + TSS region transcription start site region 36737
Gabrr2 4 33062999 to 33095865 32866 + protein coding gene gamma-aminobutyric acid (GABA) C receptor, subunit rho 2
Tssr36738 4 33063278 to 33063297 19 + TSS region transcription start site region 36738
Tssr41169 4 33072936 to 33072949 13 - TSS region transcription start site region 41169
Tssr36739 4 33077372 to 33077379 7 + TSS region transcription start site region 36739
Tssr36740 4 33077388 to 33077417 29 + TSS region transcription start site region 36740
Tssr36741 4 33077425 to 33077434 9 + TSS region transcription start site region 36741
Tssr36742 4 33132503 to 33132513 10 + TSS region transcription start site region 36742
Tssr36743 4 33132552 to 33132561 9 + TSS region transcription start site region 36743
Gabrr1 4 33132556 to 33163588 31032 + protein coding gene gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
Cpgi14111 4 33146935 to 33147164 229 CpG island CpG island 14111
Cpgi14112 4 33152193 to 33152598 405 CpG island CpG island 14112
Tssr41170 4 33172010 to 33172014 4 - TSS region transcription start site region 41170
Pm20d2 4 33174230 to 33189737 15507 - protein coding gene peptidase M20 domain containing 2
Cpgi14113 4 33188805 to 33189854 1049 CpG island CpG island 14113
Tssr41171 4 33189390 to 33189409 19 - TSS region transcription start site region 41171
Tssr41172 4 33189410 to 33189455 45 - TSS region transcription start site region 41172
Gm11930 4 33201764 to 33201953 189 + pseudogene predicted gene 11930
Cpgi14114 4 33208984 to 33209831 847 CpG island CpG island 14114
Srsf12 4 33208991 to 33233340 24349 + protein coding gene serine/arginine-rich splicing factor 12
Tssr36744 4 33209237 to 33209254 17 + TSS region transcription start site region 36744
Tssr36745 4 33209259 to 33209319 60 + TSS region transcription start site region 36745
D4Ertd199e 4 33230300 to 33230534 234 DNA segment DNA segment, Chr 4, ERATO Doi 199, expressed
Pnrc1 4 33245423 to 33248787 3364 - protein coding gene proline-rich nuclear receptor coactivator 1
Tssr41173 4 33245943 to 33246009 66 - TSS region transcription start site region 41173
Tssr41174 4 33246166 to 33246213 47 - TSS region transcription start site region 41174
Tssr41175 4 33246456 to 33246484 28 - TSS region transcription start site region 41175
Cpgi14115 4 33247397 to 33248973 1576 CpG island CpG island 14115
Tssr41176 4 33247544 to 33247563 19 - TSS region transcription start site region 41176
Tssr41177 4 33247573 to 33247599 26 - TSS region transcription start site region 41177
Tssr36746 4 33247926 to 33247999 73 + TSS region transcription start site region 36746
Tssr41178 4 33248015 to 33248027 12 - TSS region transcription start site region 41178
Tssr41179 4 33248483 to 33248489 6 - TSS region transcription start site region 41179
Tssr41180 4 33248500 to 33248518 18 - TSS region transcription start site region 41180
Tssr36747 4 33248663 to 33248683 20 + TSS region transcription start site region 36747
Tssr41181 4 33248723 to 33248752 29 - TSS region transcription start site region 41181
Tssr1132 4 33260563 to 33260569 6 + TSS region transcription start site region 1132
Tssr41182 4 33290094 to 33290102 8 - TSS region transcription start site region 41182
Tssr41183 4 33290107 to 33290119 12 - TSS region transcription start site region 41183
Tssr41184 4 33290133 to 33290169 36 - TSS region transcription start site region 41184
D4Mit294 4 33297537 to 33297654 117 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 294
Gm11934 4 33303569 to 33310137 6568 - unclassified non-coding RNA gene predicted gene 11934
Cpgi14116 4 33310167 to 33310744 577 CpG island CpG island 14116
Tssr36748 4 33310306 to 33310387 81 + TSS region transcription start site region 36748
Rngtt 4 33310311 to 33502614 192303 + protein coding gene RNA guanylyltransferase and 5'-phosphatase
Tssr36749 4 33310390 to 33310403 13 + TSS region transcription start site region 36749
Tssr36750 4 33342535 to 33342540 5 + TSS region transcription start site region 36750
Tssr36751 4 33350713 to 33350718 5 + TSS region transcription start site region 36751
D530034E23Rik 4 33402103 to 33402707 604 unclassified gene RIKEN cDNA D530034E23 gene
Mir8118 4 33438081 to 33438209 128 + miRNA gene microRNA 8118
Gm11935 4 33452491 to 33452889 398 - pseudogene predicted gene 11935
D4Mit137 4 33477813 to 33477953 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 137
Tssr41185 4 33513491 to 33513516 25 - TSS region transcription start site region 41185
Gm32893 4 33568248 to 33577843 9595 + lncRNA gene predicted gene, 32893
Gm32955 4 33602866 to 33629590 26724 + lncRNA gene predicted gene, 32955
Gm23304 4 33628841 to 33628961 120 - miRNA gene predicted gene, 23304
Gm24341 4 33681367 to 33681491 124 - snoRNA gene predicted gene, 24341
Gm33059 4 33780980 to 33839079 58099 + lncRNA gene predicted gene, 33059
Gm33008 4 33798991 to 33801048 2057 + lncRNA gene predicted gene, 33008