Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:31408624-32588741

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46849 4 31050066 to 31418507 368441 - lncRNA gene predicted gene, 46849
D4Mit292 4 31419024 to 31419124 100 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 292
Gm42315 4 31503062 to 31512101 9039 - lncRNA gene predicted gene, 42315
Tssr36657 4 31616576 to 31616578 2 + TSS region transcription start site region 36657
Gm42265 4 31628477 to 31628992 515 - lncRNA gene predicted gene, 42265
Gm32412 4 31822055 to 31831914 9859 - lncRNA gene predicted gene, 32412
Tssr41129 4 31877530 to 31877542 12 - TSS region transcription start site region 41129
Cpgi14097 4 31937539 to 31937973 434 CpG island CpG island 14097
2610008G14Rik 4 31962558 to 31963811 1253 unclassified gene RIKEN cDNA 2610008G14 gene
Cpgi14098 4 31963319 to 31964738 1419 CpG island CpG island 14098
Tssr36658 4 31963922 to 31963980 58 + TSS region transcription start site region 36658
Tssr36659 4 31964081 to 31964160 79 + TSS region transcription start site region 36659
Map3k7 4 31964097 to 32023467 59370 + protein coding gene mitogen-activated protein kinase kinase kinase 7
Tssr41130 4 31970541 to 31970548 7 - TSS region transcription start site region 41130
Tssr41131 4 31970560 to 31970571 11 - TSS region transcription start site region 41131
Tssr41132 4 31970576 to 31970583 7 - TSS region transcription start site region 41132
Gm11926 4 31990857 to 31991286 429 - pseudogene predicted gene 11926
Gm26254 4 31998624 to 31998741 117 - snRNA gene predicted gene, 26254
Tssr41133 4 31998738 to 31998742 4 - TSS region transcription start site region 41133
9530004M16Rik 4 32007988 to 32009135 1147 unclassified gene RIKEN cDNA 9530004M16 gene
Tssr36660 4 32015510 to 32015521 11 + TSS region transcription start site region 36660
Tssr36661 4 32015543 to 32015552 9 + TSS region transcription start site region 36661
Tssr36662 4 32051710 to 32051731 21 + TSS region transcription start site region 36662
Gm11927 4 32051738 to 32052914 1176 + pseudogene predicted gene 11927
Cpgi14099 4 32095365 to 32095606 241 CpG island CpG island 14099
Tssr36663 4 32149458 to 32149486 28 + TSS region transcription start site region 36663
Gm11928 4 32149786 to 32150222 436 + pseudogene predicted gene 11928
Gm42266 4 32160976 to 32186820 25844 - lncRNA gene predicted gene, 42266
Tssr36664 4 32165113 to 32165130 17 + TSS region transcription start site region 36664
Tssr36665 4 32165150 to 32165161 11 + TSS region transcription start site region 36665
Tssr41134 4 32167283 to 32167305 22 - TSS region transcription start site region 41134
D4Mit193 4 32167964 to 32168099 135 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 193
D4Mit95 4 32176186 to 32176355 169 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 95
Gm11929 4 32207148 to 32208092 944 + pseudogene predicted gene 11929
Tssr36666 4 32220136 to 32220140 4 + TSS region transcription start site region 36666
n-TGccc3 4 32230250 to 32230320 70 + tRNA gene nuclear encoded tRNA glycine 3 (anticodon CCC)
Cpgi14100 4 32238159 to 32240358 2199 CpG island CpG island 14100
Tssr36667 4 32238470 to 32238493 23 + TSS region transcription start site region 36667
Tssr36668 4 32238713 to 32238802 89 + TSS region transcription start site region 36668
Bach2 4 32238804 to 32586108 347304 + protein coding gene BTB and CNC homology, basic leucine zipper transcription factor 2
Tssr36669 4 32238883 to 32238890 7 + TSS region transcription start site region 36669
Tssr36670 4 32238935 to 32238946 11 + TSS region transcription start site region 36670
Tssr36671 4 32238953 to 32238964 11 + TSS region transcription start site region 36671
Tssr36672 4 32238980 to 32238996 16 + TSS region transcription start site region 36672
Tssr41135 4 32239332 to 32239348 16 - TSS region transcription start site region 41135
Tssr36673 4 32239423 to 32239443 20 + TSS region transcription start site region 36673
Tssr36674 4 32239449 to 32239470 21 + TSS region transcription start site region 36674
Tssr41136 4 32239953 to 32239964 11 - TSS region transcription start site region 41136
Tssr41137 4 32239992 to 32239998 6 - TSS region transcription start site region 41137
Tssr36675 4 32240470 to 32240474 4 + TSS region transcription start site region 36675
Tssr41138 4 32241242 to 32241253 11 - TSS region transcription start site region 41138
Tssr36676 4 32247757 to 32247764 7 + TSS region transcription start site region 36676
Tssr41139 4 32248338 to 32248341 3 - TSS region transcription start site region 41139
Tssr36677 4 32248536 to 32248557 21 + TSS region transcription start site region 36677
Tssr36678 4 32249273 to 32249310 37 + TSS region transcription start site region 36678
Tssr36679 4 32249385 to 32249420 35 + TSS region transcription start site region 36679
Tssr36680 4 32249421 to 32249428 7 + TSS region transcription start site region 36680
Tssr41140 4 32250353 to 32250359 6 - TSS region transcription start site region 41140
Tssr36681 4 32250574 to 32250589 15 + TSS region transcription start site region 36681
Tssr41141 4 32250685 to 32250695 10 - TSS region transcription start site region 41141
Tssr41142 4 32250731 to 32250743 12 - TSS region transcription start site region 41142
Bach2it1 4 32251761 to 32265835 14074 + sense intronic lncRNA gene BTB and CNC homology 2, intronic transcript 1
Tssr41143 4 32251859 to 32251869 10 - TSS region transcription start site region 41143
Tssr36682 4 32252260 to 32252288 28 + TSS region transcription start site region 36682
Tssr36683 4 32252536 to 32252543 7 + TSS region transcription start site region 36683
Tssr41144 4 32255456 to 32255462 6 - TSS region transcription start site region 41144
Tssr41145 4 32258153 to 32258165 12 - TSS region transcription start site region 41145
Tssr36684 4 32258662 to 32258674 12 + TSS region transcription start site region 36684
Tssr41146 4 32263147 to 32263162 15 - TSS region transcription start site region 41146
Tssr36685 4 32263880 to 32263893 13 + TSS region transcription start site region 36685
Tssr41147 4 32268069 to 32268107 38 - TSS region transcription start site region 41147
Tssr36686 4 32268318 to 32268348 30 + TSS region transcription start site region 36686
Tssr41148 4 32280692 to 32280706 14 - TSS region transcription start site region 41148
D4Mit267 4 32282644 to 32282758 114 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 267
Tssr41149 4 32291457 to 32291470 13 - TSS region transcription start site region 41149
Tssr36687 4 32291705 to 32291710 5 + TSS region transcription start site region 36687
Tssr36688 4 32291773 to 32291782 9 + TSS region transcription start site region 36688
Tssr36689 4 32291783 to 32291799 16 + TSS region transcription start site region 36689
Tssr36690 4 32313075 to 32313082 7 + TSS region transcription start site region 36690
Tssr41150 4 32335639 to 32335646 7 - TSS region transcription start site region 41150
Tssr36691 4 32335932 to 32335935 3 + TSS region transcription start site region 36691
Tssr36692 4 32335944 to 32335960 16 + TSS region transcription start site region 36692
Tssr36693 4 32335963 to 32335974 11 + TSS region transcription start site region 36693
Tssr36694 4 32336028 to 32336035 7 + TSS region transcription start site region 36694
Tssr36695 4 32336039 to 32336046 7 + TSS region transcription start site region 36695
Tssr41151 4 32343746 to 32343755 9 - TSS region transcription start site region 41151
Tssr41152 4 32343817 to 32343829 12 - TSS region transcription start site region 41152
Tssr41153 4 32351431 to 32351440 9 - TSS region transcription start site region 41153
Tssr36696 4 32353385 to 32353423 38 + TSS region transcription start site region 36696
Tssr41154 4 32363435 to 32363446 11 - TSS region transcription start site region 41154
Tssr36697 4 32363934 to 32363942 8 + TSS region transcription start site region 36697
Tssr36698 4 32363944 to 32363954 10 + TSS region transcription start site region 36698
Tssr41155 4 32375158 to 32375166 8 - TSS region transcription start site region 41155
Tssr41156 4 32375202 to 32375213 11 - TSS region transcription start site region 41156
Tssr36699 4 32376259 to 32376283 24 + TSS region transcription start site region 36699
Tssr41157 4 32406080 to 32406083 3 - TSS region transcription start site region 41157
Tssr36700 4 32415578 to 32415582 4 + TSS region transcription start site region 36700
Tssr36701 4 32424736 to 32424747 11 + TSS region transcription start site region 36701
Tssr36702 4 32424753 to 32424774 21 + TSS region transcription start site region 36702
Tssr41158 4 32425184 to 32425195 11 - TSS region transcription start site region 41158
Tssr36703 4 32425229 to 32425239 10 + TSS region transcription start site region 36703
Tssr36704 4 32426686 to 32426699 13 + TSS region transcription start site region 36704
Tssr41159 4 32442008 to 32442010 2 - TSS region transcription start site region 41159
Tssr36705 4 32445528 to 32445533 5 + TSS region transcription start site region 36705
Cpgi14101 4 32481377 to 32481636 259 CpG island CpG island 14101
Gm24371 4 32514787 to 32515053 266 + unclassified non-coding RNA gene predicted gene, 24371
Tssr36706 4 32527090 to 32527113 23 + TSS region transcription start site region 36706
Bach2os 4 32559680 to 32571662 11982 - antisense lncRNA gene BTB and CNC homology 2, opposite strand
Tssr41160 4 32571663 to 32571686 23 - TSS region transcription start site region 41160