Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:3140257-4440279

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn1r2 4 3172083 to 3173669 1586 + protein coding gene vomeronasal 1 receptor 2
Vmn1r3 4 3184348 to 3185358 1010 - protein coding gene vomeronasal 1 receptor 3
Cpgi13989 4 3230888 to 3231423 535 CpG island CpG island 13989
Gm46840 4 3230925 to 3242575 11650 + protein coding gene predicted gene, 46840
Tssr36325 4 3231170 to 3231188 18 + TSS region transcription start site region 36325
AI838599 4 3256920 to 3259309 2389 + lincRNA gene expressed sequence AI838599
Gm11783 4 3258349 to 3259233 884 + pseudogene predicted gene 11783
Gm11786 4 3327175 to 3327329 154 + pseudogene predicted gene 11786
Tssr36326 4 3369987 to 3369988 1 + TSS region transcription start site region 36326
Gm11784 4 3386846 to 3388691 1845 + pseudogene predicted gene 11784
Tssr40804 4 3454356 to 3454361 5 - TSS region transcription start site region 40804
Gm11785 4 3455702 to 3456302 600 + pseudogene predicted gene 11785
Gm11787 4 3496713 to 3511963 15250 - pseudogene predicted gene 11787
Mir3471-2 4 3537090 to 3537191 101 + miRNA gene microRNA 3471-2
Tmem68 4 3549041 to 3574848 25807 - protein coding gene transmembrane protein 68
B230117O15Rik 4 3555081 to 3556224 1143 unclassified gene RIKEN cDNA B230117O15 gene
Cpgi13990 4 3574525 to 3575167 642 CpG island CpG island 13990
Tssr40805 4 3574762 to 3574774 12 - TSS region transcription start site region 40805
Tssr40806 4 3574776 to 3574821 45 - TSS region transcription start site region 40806
Tssr40807 4 3574822 to 3574840 18 - TSS region transcription start site region 40807
Tssr40808 4 3574844 to 3574850 6 - TSS region transcription start site region 40808
Tssr36327 4 3574855 to 3574871 16 + TSS region transcription start site region 36327
Tssr36328 4 3574872 to 3574913 41 + TSS region transcription start site region 36328
Tgs1 4 3574875 to 3616619 41744 + protein coding gene trimethylguanosine synthase 1
Tssr36329 4 3574917 to 3574933 16 + TSS region transcription start site region 36329
Tssr36330 4 3574937 to 3574955 18 + TSS region transcription start site region 36330
Tssr36331 4 3574958 to 3574970 12 + TSS region transcription start site region 36331
Tssr36332 4 3574984 to 3574993 9 + TSS region transcription start site region 36332
Tssr40809 4 3575125 to 3575142 17 - TSS region transcription start site region 40809
Gm22541 4 3619189 to 3619315 126 + snoRNA gene predicted gene, 22541
Tssr36333 4 3649251 to 3649259 8 + TSS region transcription start site region 36333
2210414B05Rik 4 3656508 to 3663108 6600 + lincRNA gene RIKEN cDNA 2210414B05 gene
Tssr36334 4 3656508 to 3656518 10 + TSS region transcription start site region 36334
Lmr9 4 3657124 to 3657234 110 QTL leishmaniasis resistance 9
D4Mit149 4 3657124 to 3657234 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 149
Lmr9a 4 3657124 to 3657234 110 QTL leishmaniasis resistance 9
Lmr9b 4 3657124 to 3657234 110 QTL leishmaniasis resistance 9b
Gm42250 4 3659570 to 3678048 18478 - lncRNA gene predicted gene, 42250
Cpgi13991 4 3677802 to 3679053 1251 CpG island CpG island 13991
Tssr36335 4 3678077 to 3678102 25 + TSS region transcription start site region 36335
Tssr36336 4 3678108 to 3678134 26 + TSS region transcription start site region 36336
Gm26857 4 3678117 to 3689548 11431 - lincRNA gene predicted gene, 26857
Lyn 4 3678121 to 3791612 113491 + protein coding gene LYN proto-oncogene, Src family tyrosine kinase
Tssr40810 4 3678982 to 3679029 47 - TSS region transcription start site region 40810
Tssr36337 4 3679182 to 3679191 9 + TSS region transcription start site region 36337
Tssr36338 4 3683255 to 3683261 6 + TSS region transcription start site region 36338
Tssr36339 4 3683712 to 3683724 12 + TSS region transcription start site region 36339
Tssr36340 4 3683958 to 3683970 12 + TSS region transcription start site region 36340
Tssr36341 4 3684835 to 3684846 11 + TSS region transcription start site region 36341
Tssr36342 4 3684851 to 3684865 14 + TSS region transcription start site region 36342
Tssr36343 4 3684893 to 3684902 9 + TSS region transcription start site region 36343
Tssr36344 4 3687910 to 3687928 18 + TSS region transcription start site region 36344
Tssr36345 4 3693996 to 3694000 4 + TSS region transcription start site region 36345
Tssr36346 4 3694044 to 3694056 12 + TSS region transcription start site region 36346
Tssr36347 4 3694104 to 3694114 10 + TSS region transcription start site region 36347
D4Wsu139e 4 3694198 to 3694436 238 DNA segment DNA segment, Chr 4, Wayne State University 139, expressed
Tssr36348 4 3697331 to 3697343 12 + TSS region transcription start site region 36348
Tssr36349 4 3697348 to 3697366 18 + TSS region transcription start site region 36349
Tssr36350 4 3700817 to 3700828 11 + TSS region transcription start site region 36350
6330407A03Rik 4 3714964 to 3716813 1849 + lncRNA gene RIKEN cDNA 6330407A03 gene
Gm11805 4 3720427 to 3721026 599 - pseudogene predicted gene 11805
Tssr36351 4 3750698 to 3750700 2 + TSS region transcription start site region 36351
Tssr36352 4 3779156 to 3779174 18 + TSS region transcription start site region 36352
Tssr36353 4 3779211 to 3779257 46 + TSS region transcription start site region 36353
Tssr36354 4 3779336 to 3779352 16 + TSS region transcription start site region 36354
Tssr1112 4 3786212 to 3786215 3 + TSS region transcription start site region 1112
Tssr36355 4 3789921 to 3789928 7 + TSS region transcription start site region 36355
Tssr36356 4 3789991 to 3790002 11 + TSS region transcription start site region 36356
Tssr36357 4 3790017 to 3790020 3 + TSS region transcription start site region 36357
Tssr36358 4 3790257 to 3790279 22 + TSS region transcription start site region 36358
Tssr36359 4 3790290 to 3790301 11 + TSS region transcription start site region 36359
Tssr36360 4 3790308 to 3790329 21 + TSS region transcription start site region 36360
Tssr36361 4 3790339 to 3790360 21 + TSS region transcription start site region 36361
Tssr36362 4 3790391 to 3790395 4 + TSS region transcription start site region 36362
Tssr36363 4 3791988 to 3792008 20 + TSS region transcription start site region 36363
Tssr36364 4 3792611 to 3792615 4 + TSS region transcription start site region 36364
Gm22781 4 3796447 to 3796583 136 - snoRNA gene predicted gene, 22781
Tssr36365 4 3804378 to 3804383 5 + TSS region transcription start site region 36365
9430025C20Rik 4 3806635 to 3808751 2116 - pseudogene RIKEN cDNA 9430025C20 gene
Tssr36366 4 3809105 to 3809111 6 + TSS region transcription start site region 36366
Rps20 4 3831584 to 3835655 4071 - protein coding gene ribosomal protein S20
Tssr36367 4 3834467 to 3834475 8 + TSS region transcription start site region 36367
Cpgi13992 4 3834989 to 3835997 1008 CpG island CpG island 13992
Gm24016 4 3835079 to 3835146 67 - snoRNA gene predicted gene, 24016
Tssr40811 4 3835595 to 3835602 7 - TSS region transcription start site region 40811
Gm32823 4 3835735 to 3864892 29157 + lncRNA gene predicted gene, 32823
Gm24125 4 3857477 to 3857613 136 - snoRNA gene predicted gene, 24125
Mos 4 3870658 to 3872105 1447 - protein coding gene Moloney sarcoma oncogene
Cpgi13993 4 3870832 to 3871908 1076 CpG island CpG island 13993
Cpgi13994 4 3874813 to 3875398 585 CpG island CpG island 13994
Tssr40812 4 3875168 to 3875179 11 - TSS region transcription start site region 40812
Tssr40813 4 3875202 to 3875270 68 - TSS region transcription start site region 40813
Tssr40814 4 3899011 to 3899015 4 - TSS region transcription start site region 40814
Plag1 4 3900996 to 3938423 37427 - protein coding gene pleiomorphic adenoma gene 1
Tssr40815 4 3903327 to 3903328 1 - TSS region transcription start site region 40815
Cpgi13995 4 3937520 to 3939405 1885 CpG island CpG island 13995
Tssr40816 4 3938354 to 3938401 47 - TSS region transcription start site region 40816
Chchd7 4 3938888 to 3951046 12158 + protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 7
Tssr36368 4 3938893 to 3938898 5 + TSS region transcription start site region 36368
Tssr36369 4 3938904 to 3938932 28 + TSS region transcription start site region 36369
Tssr36370 4 3939381 to 3939421 40 + TSS region transcription start site region 36370
Tssr36371 4 3940747 to 3940751 4 + TSS region transcription start site region 36371
Gm19037 4 3961244 to 3962346 1102 + pseudogene predicted gene, 19037
Gm11808 4 3973117 to 3973595 478 - protein coding gene predicted gene 11808
Tssr40817 4 3973595 to 3973607 12 - TSS region transcription start site region 40817
Rps10-ps3 4 3978251 to 3978750 499 - pseudogene ribosomal protein S10, pseudogene 3
Sdr16c5 4 3995942 to 4019663 23721 - protein coding gene short chain dehydrogenase/reductase family 16C, member 5
Tssr40818 4 4016472 to 4016482 10 - TSS region transcription start site region 40818
Tssr40819 4 4016484 to 4016497 13 - TSS region transcription start site region 40819
Tssr40820 4 4016524 to 4016539 15 - TSS region transcription start site region 40820
Tssr40821 4 4019488 to 4019499 11 - TSS region transcription start site region 40821
Tssr40822 4 4019508 to 4019562 54 - TSS region transcription start site region 40822
Tssr40823 4 4019566 to 4019576 10 - TSS region transcription start site region 40823
Tssr40824 4 4019628 to 4019659 31 - TSS region transcription start site region 40824
Tssr40825 4 4019668 to 4019675 7 - TSS region transcription start site region 40825
Sdr16c6 4 4055926 to 4077514 21588 - protein coding gene short chain dehydrogenase/reductase family 16C, member 6
Tssr40826 4 4077510 to 4077540 30 - TSS region transcription start site region 40826
Tssr40827 4 4112256 to 4112279 23 - TSS region transcription start site region 40827
Penk 4 4133531 to 4138819 5288 - protein coding gene preproenkephalin
Tssr40828 4 4133805 to 4133822 17 - TSS region transcription start site region 40828
Tssr40829 4 4133842 to 4133856 14 - TSS region transcription start site region 40829
Tssr40830 4 4134195 to 4134210 15 - TSS region transcription start site region 40830
Cpgi13996 4 4137955 to 4139202 1247 CpG island CpG island 13996
Tssr40831 4 4138171 to 4138215 44 - TSS region transcription start site region 40831
Tssr40832 4 4138217 to 4138231 14 - TSS region transcription start site region 40832
Tssr36372 4 4138298 to 4138343 45 + TSS region transcription start site region 36372
Tssr40833 4 4138432 to 4138480 48 - TSS region transcription start site region 40833
Tssr40834 4 4138774 to 4138798 24 - TSS region transcription start site region 40834
Tssr40835 4 4138817 to 4138828 11 - TSS region transcription start site region 40835
Tssr40836 4 4138961 to 4138968 7 - TSS region transcription start site region 40836
Tssr40837 4 4138991 to 4139024 33 - TSS region transcription start site region 40837
A830012C17Rik 4 4148030 to 4181846 33816 + lncRNA gene RIKEN cDNA A830012C17 gene
Gm33007 4 4377272 to 4418084 40812 + lncRNA gene predicted gene, 33007
Elorr3 4 156183778 to 3722677 -152461101 QTL ethanol induced loss of righting response 3