Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:3105702-3806302

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn1r-ps3 4 3139141 to 3140057 916 - pseudogene vomeronasal 1 receptor, pseudogene 3
Vmn1r2 4 3172083 to 3173669 1586 + protein coding gene vomeronasal 1 receptor 2
Vmn1r3 4 3184348 to 3185358 1010 - protein coding gene vomeronasal 1 receptor 3
Cpgi13989 4 3230888 to 3231423 535 CpG island CpG island 13989
Gm46840 4 3230925 to 3242575 11650 + protein coding gene predicted gene, 46840
Tssr36325 4 3231170 to 3231188 18 + TSS region transcription start site region 36325
AI838599 4 3256920 to 3259309 2389 + lincRNA gene expressed sequence AI838599
Gm11783 4 3258349 to 3259233 884 + pseudogene predicted gene 11783
Gm11786 4 3327175 to 3327329 154 + pseudogene predicted gene 11786
Tssr36326 4 3369987 to 3369988 1 + TSS region transcription start site region 36326
Gm11784 4 3386846 to 3388691 1845 + pseudogene predicted gene 11784
Tssr40804 4 3454356 to 3454361 5 - TSS region transcription start site region 40804
Gm11785 4 3455702 to 3456302 600 + pseudogene predicted gene 11785
Gm11787 4 3496713 to 3511963 15250 - pseudogene predicted gene 11787
Mir3471-2 4 3537090 to 3537191 101 + miRNA gene microRNA 3471-2
Tmem68 4 3549041 to 3574848 25807 - protein coding gene transmembrane protein 68
B230117O15Rik 4 3555081 to 3556224 1143 unclassified gene RIKEN cDNA B230117O15 gene
Cpgi13990 4 3574525 to 3575167 642 CpG island CpG island 13990
Tssr40805 4 3574762 to 3574774 12 - TSS region transcription start site region 40805
Tssr40806 4 3574776 to 3574821 45 - TSS region transcription start site region 40806
Tssr40807 4 3574822 to 3574840 18 - TSS region transcription start site region 40807
Tssr40808 4 3574844 to 3574850 6 - TSS region transcription start site region 40808
Tssr36327 4 3574855 to 3574871 16 + TSS region transcription start site region 36327
Tssr36328 4 3574872 to 3574913 41 + TSS region transcription start site region 36328
Tgs1 4 3574875 to 3616619 41744 + protein coding gene trimethylguanosine synthase 1
Tssr36329 4 3574917 to 3574933 16 + TSS region transcription start site region 36329
Tssr36330 4 3574937 to 3574955 18 + TSS region transcription start site region 36330
Tssr36331 4 3574958 to 3574970 12 + TSS region transcription start site region 36331
Tssr36332 4 3574984 to 3574993 9 + TSS region transcription start site region 36332
Tssr40809 4 3575125 to 3575142 17 - TSS region transcription start site region 40809
Gm22541 4 3619189 to 3619315 126 + snoRNA gene predicted gene, 22541
Tssr36333 4 3649251 to 3649259 8 + TSS region transcription start site region 36333
Tssr36334 4 3656508 to 3656518 10 + TSS region transcription start site region 36334
2210414B05Rik 4 3656508 to 3663108 6600 + lincRNA gene RIKEN cDNA 2210414B05 gene
D4Mit149 4 3657124 to 3657234 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 149
Lmr9 4 3657124 to 3657234 110 QTL leishmaniasis resistance 9
Lmr9a 4 3657124 to 3657234 110 QTL leishmaniasis resistance 9
Lmr9b 4 3657124 to 3657234 110 QTL leishmaniasis resistance 9b
Gm42250 4 3659570 to 3678048 18478 - lncRNA gene predicted gene, 42250
Cpgi13991 4 3677802 to 3679053 1251 CpG island CpG island 13991
Tssr36335 4 3678077 to 3678102 25 + TSS region transcription start site region 36335
Tssr36336 4 3678108 to 3678134 26 + TSS region transcription start site region 36336
Gm26857 4 3678117 to 3689548 11431 - lincRNA gene predicted gene, 26857
Lyn 4 3678121 to 3791612 113491 + protein coding gene LYN proto-oncogene, Src family tyrosine kinase
Tssr40810 4 3678982 to 3679029 47 - TSS region transcription start site region 40810
Tssr36337 4 3679182 to 3679191 9 + TSS region transcription start site region 36337
Tssr36338 4 3683255 to 3683261 6 + TSS region transcription start site region 36338
Tssr36339 4 3683712 to 3683724 12 + TSS region transcription start site region 36339
Tssr36340 4 3683958 to 3683970 12 + TSS region transcription start site region 36340
Tssr36341 4 3684835 to 3684846 11 + TSS region transcription start site region 36341
Tssr36342 4 3684851 to 3684865 14 + TSS region transcription start site region 36342
Tssr36343 4 3684893 to 3684902 9 + TSS region transcription start site region 36343
Tssr36344 4 3687910 to 3687928 18 + TSS region transcription start site region 36344
Tssr36345 4 3693996 to 3694000 4 + TSS region transcription start site region 36345
Tssr36346 4 3694044 to 3694056 12 + TSS region transcription start site region 36346
Tssr36347 4 3694104 to 3694114 10 + TSS region transcription start site region 36347
D4Wsu139e 4 3694198 to 3694436 238 DNA segment DNA segment, Chr 4, Wayne State University 139, expressed
Tssr36348 4 3697331 to 3697343 12 + TSS region transcription start site region 36348
Tssr36349 4 3697348 to 3697366 18 + TSS region transcription start site region 36349
Tssr36350 4 3700817 to 3700828 11 + TSS region transcription start site region 36350
6330407A03Rik 4 3714964 to 3716813 1849 + lncRNA gene RIKEN cDNA 6330407A03 gene
Gm11805 4 3720427 to 3721026 599 - pseudogene predicted gene 11805
Tssr36351 4 3750698 to 3750700 2 + TSS region transcription start site region 36351
Tssr36352 4 3779156 to 3779174 18 + TSS region transcription start site region 36352
Tssr36353 4 3779211 to 3779257 46 + TSS region transcription start site region 36353
Tssr36354 4 3779336 to 3779352 16 + TSS region transcription start site region 36354
Tssr1112 4 3786212 to 3786215 3 + TSS region transcription start site region 1112
Tssr36355 4 3789921 to 3789928 7 + TSS region transcription start site region 36355
Tssr36356 4 3789991 to 3790002 11 + TSS region transcription start site region 36356
Tssr36357 4 3790017 to 3790020 3 + TSS region transcription start site region 36357
Tssr36358 4 3790257 to 3790279 22 + TSS region transcription start site region 36358
Tssr36359 4 3790290 to 3790301 11 + TSS region transcription start site region 36359
Tssr36360 4 3790308 to 3790329 21 + TSS region transcription start site region 36360
Tssr36361 4 3790339 to 3790360 21 + TSS region transcription start site region 36361
Tssr36362 4 3790391 to 3790395 4 + TSS region transcription start site region 36362
Tssr36363 4 3791988 to 3792008 20 + TSS region transcription start site region 36363
Tssr36364 4 3792611 to 3792615 4 + TSS region transcription start site region 36364
Gm22781 4 3796447 to 3796583 136 - snoRNA gene predicted gene, 22781
Tssr36365 4 3804378 to 3804383 5 + TSS region transcription start site region 36365
Elorr3 4 156183778 to 3722677 -152461101 QTL ethanol induced loss of righting response 3