Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:30243419-33924057

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254 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq2 4 30343419 to 33824057 3480638 QTL open field activity QTL 2
Gm11924 4 30432112 to 30523783 91671 + lincRNA gene predicted gene 11924
Tssr36654 4 30664587 to 30664599 12 + TSS region transcription start site region 36654
4930556G01Rik 4 30664596 to 30796663 132067 + lincRNA gene RIKEN cDNA 4930556G01 gene
Tssr36655 4 30664604 to 30664614 10 + TSS region transcription start site region 36655
Gm22831 4 30701949 to 30702057 108 - miRNA gene predicted gene, 22831
Gm11920 4 30701973 to 30702535 562 - pseudogene predicted gene 11920
Tssr41128 4 30702742 to 30702747 5 - TSS region transcription start site region 41128
Tssr36656 4 30794947 to 30794949 2 + TSS region transcription start site region 36656
Gm42314 4 30992680 to 30996096 3416 + pseudogene predicted gene, 42314
Gm46849 4 31050066 to 31418507 368441 - lncRNA gene predicted gene, 46849
D4Mit192 4 31137059 to 31137166 107 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 192
Gm25705 4 31174909 to 31175012 103 - snRNA gene predicted gene, 25705
D4Ertd510e 4 31266047 to 31266250 203 DNA segment DNA segment, Chr 4, ERATO Doi 510, expressed
Gm32173 4 31324093 to 31332994 8901 + lncRNA gene predicted gene, 32173
Gm11922 4 31380472 to 31380946 474 + pseudogene predicted gene 11922
D4Mit292 4 31419024 to 31419124 100 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 292
Gm42315 4 31503062 to 31512101 9039 - lncRNA gene predicted gene, 42315
Tssr36657 4 31616576 to 31616578 2 + TSS region transcription start site region 36657
Gm42265 4 31628477 to 31628992 515 - lncRNA gene predicted gene, 42265
Gm32412 4 31822055 to 31831914 9859 - lncRNA gene predicted gene, 32412
Tssr41129 4 31877530 to 31877542 12 - TSS region transcription start site region 41129
Cpgi14097 4 31937539 to 31937973 434 CpG island CpG island 14097
2610008G14Rik 4 31962558 to 31963811 1253 unclassified gene RIKEN cDNA 2610008G14 gene
Cpgi14098 4 31963319 to 31964738 1419 CpG island CpG island 14098
Tssr36658 4 31963922 to 31963980 58 + TSS region transcription start site region 36658
Tssr36659 4 31964081 to 31964160 79 + TSS region transcription start site region 36659
Map3k7 4 31964097 to 32023467 59370 + protein coding gene mitogen-activated protein kinase kinase kinase 7
Tssr41130 4 31970541 to 31970548 7 - TSS region transcription start site region 41130
Tssr41131 4 31970560 to 31970571 11 - TSS region transcription start site region 41131
Tssr41132 4 31970576 to 31970583 7 - TSS region transcription start site region 41132
Gm11926 4 31990857 to 31991286 429 - pseudogene predicted gene 11926
Gm26254 4 31998624 to 31998741 117 - snRNA gene predicted gene, 26254
Tssr41133 4 31998738 to 31998742 4 - TSS region transcription start site region 41133
9530004M16Rik 4 32007988 to 32009135 1147 unclassified gene RIKEN cDNA 9530004M16 gene
Tssr36660 4 32015510 to 32015521 11 + TSS region transcription start site region 36660
Tssr36661 4 32015543 to 32015552 9 + TSS region transcription start site region 36661
Tssr36662 4 32051710 to 32051731 21 + TSS region transcription start site region 36662
Gm11927 4 32051738 to 32052914 1176 + pseudogene predicted gene 11927
Cpgi14099 4 32095365 to 32095606 241 CpG island CpG island 14099
Tssr36663 4 32149458 to 32149486 28 + TSS region transcription start site region 36663
Gm11928 4 32149786 to 32150222 436 + pseudogene predicted gene 11928
Gm42266 4 32160976 to 32186820 25844 - lncRNA gene predicted gene, 42266
Tssr36664 4 32165113 to 32165130 17 + TSS region transcription start site region 36664
Tssr36665 4 32165150 to 32165161 11 + TSS region transcription start site region 36665
Tssr41134 4 32167283 to 32167305 22 - TSS region transcription start site region 41134
D4Mit193 4 32167964 to 32168099 135 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 193
D4Mit95 4 32176186 to 32176355 169 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 95
Gm11929 4 32207148 to 32208092 944 + pseudogene predicted gene 11929
Tssr36666 4 32220136 to 32220140 4 + TSS region transcription start site region 36666
n-TGccc3 4 32230250 to 32230320 70 + tRNA gene nuclear encoded tRNA glycine 3 (anticodon CCC)
Cpgi14100 4 32238159 to 32240358 2199 CpG island CpG island 14100
Tssr36667 4 32238470 to 32238493 23 + TSS region transcription start site region 36667
Tssr36668 4 32238713 to 32238802 89 + TSS region transcription start site region 36668
Bach2 4 32238804 to 32586108 347304 + protein coding gene BTB and CNC homology, basic leucine zipper transcription factor 2
Tssr36669 4 32238883 to 32238890 7 + TSS region transcription start site region 36669
Tssr36670 4 32238935 to 32238946 11 + TSS region transcription start site region 36670
Tssr36671 4 32238953 to 32238964 11 + TSS region transcription start site region 36671
Tssr36672 4 32238980 to 32238996 16 + TSS region transcription start site region 36672
Tssr41135 4 32239332 to 32239348 16 - TSS region transcription start site region 41135
Tssr36673 4 32239423 to 32239443 20 + TSS region transcription start site region 36673
Tssr36674 4 32239449 to 32239470 21 + TSS region transcription start site region 36674
Tssr41136 4 32239953 to 32239964 11 - TSS region transcription start site region 41136
Tssr41137 4 32239992 to 32239998 6 - TSS region transcription start site region 41137
Tssr36675 4 32240470 to 32240474 4 + TSS region transcription start site region 36675
Tssr41138 4 32241242 to 32241253 11 - TSS region transcription start site region 41138
Tssr36676 4 32247757 to 32247764 7 + TSS region transcription start site region 36676
Tssr41139 4 32248338 to 32248341 3 - TSS region transcription start site region 41139
Tssr36677 4 32248536 to 32248557 21 + TSS region transcription start site region 36677
Tssr36678 4 32249273 to 32249310 37 + TSS region transcription start site region 36678
Tssr36679 4 32249385 to 32249420 35 + TSS region transcription start site region 36679
Tssr36680 4 32249421 to 32249428 7 + TSS region transcription start site region 36680
Tssr41140 4 32250353 to 32250359 6 - TSS region transcription start site region 41140
Tssr36681 4 32250574 to 32250589 15 + TSS region transcription start site region 36681
Tssr41141 4 32250685 to 32250695 10 - TSS region transcription start site region 41141
Tssr41142 4 32250731 to 32250743 12 - TSS region transcription start site region 41142
Bach2it1 4 32251761 to 32265835 14074 + sense intronic lncRNA gene BTB and CNC homology 2, intronic transcript 1
Tssr41143 4 32251859 to 32251869 10 - TSS region transcription start site region 41143
Tssr36682 4 32252260 to 32252288 28 + TSS region transcription start site region 36682
Tssr36683 4 32252536 to 32252543 7 + TSS region transcription start site region 36683
Tssr41144 4 32255456 to 32255462 6 - TSS region transcription start site region 41144
Tssr41145 4 32258153 to 32258165 12 - TSS region transcription start site region 41145
Tssr36684 4 32258662 to 32258674 12 + TSS region transcription start site region 36684
Tssr41146 4 32263147 to 32263162 15 - TSS region transcription start site region 41146
Tssr36685 4 32263880 to 32263893 13 + TSS region transcription start site region 36685
Tssr41147 4 32268069 to 32268107 38 - TSS region transcription start site region 41147
Tssr36686 4 32268318 to 32268348 30 + TSS region transcription start site region 36686
Tssr41148 4 32280692 to 32280706 14 - TSS region transcription start site region 41148
D4Mit267 4 32282644 to 32282758 114 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 267
Tssr41149 4 32291457 to 32291470 13 - TSS region transcription start site region 41149
Tssr36687 4 32291705 to 32291710 5 + TSS region transcription start site region 36687
Tssr36688 4 32291773 to 32291782 9 + TSS region transcription start site region 36688
Tssr36689 4 32291783 to 32291799 16 + TSS region transcription start site region 36689
Tssr36690 4 32313075 to 32313082 7 + TSS region transcription start site region 36690
Tssr41150 4 32335639 to 32335646 7 - TSS region transcription start site region 41150
Tssr36691 4 32335932 to 32335935 3 + TSS region transcription start site region 36691
Tssr36692 4 32335944 to 32335960 16 + TSS region transcription start site region 36692
Tssr36693 4 32335963 to 32335974 11 + TSS region transcription start site region 36693
Tssr36694 4 32336028 to 32336035 7 + TSS region transcription start site region 36694
Tssr36695 4 32336039 to 32336046 7 + TSS region transcription start site region 36695
Tssr41151 4 32343746 to 32343755 9 - TSS region transcription start site region 41151
Tssr41152 4 32343817 to 32343829 12 - TSS region transcription start site region 41152
Tssr41153 4 32351431 to 32351440 9 - TSS region transcription start site region 41153
Tssr36696 4 32353385 to 32353423 38 + TSS region transcription start site region 36696
Tssr41154 4 32363435 to 32363446 11 - TSS region transcription start site region 41154
Tssr36697 4 32363934 to 32363942 8 + TSS region transcription start site region 36697
Tssr36698 4 32363944 to 32363954 10 + TSS region transcription start site region 36698
Tssr41155 4 32375158 to 32375166 8 - TSS region transcription start site region 41155
Tssr41156 4 32375202 to 32375213 11 - TSS region transcription start site region 41156
Tssr36699 4 32376259 to 32376283 24 + TSS region transcription start site region 36699
Tssr41157 4 32406080 to 32406083 3 - TSS region transcription start site region 41157
Tssr36700 4 32415578 to 32415582 4 + TSS region transcription start site region 36700
Tssr36701 4 32424736 to 32424747 11 + TSS region transcription start site region 36701
Tssr36702 4 32424753 to 32424774 21 + TSS region transcription start site region 36702
Tssr41158 4 32425184 to 32425195 11 - TSS region transcription start site region 41158
Tssr36703 4 32425229 to 32425239 10 + TSS region transcription start site region 36703
Tssr36704 4 32426686 to 32426699 13 + TSS region transcription start site region 36704
Tssr41159 4 32442008 to 32442010 2 - TSS region transcription start site region 41159
Tssr36705 4 32445528 to 32445533 5 + TSS region transcription start site region 36705
Cpgi14101 4 32481377 to 32481636 259 CpG island CpG island 14101
Gm24371 4 32514787 to 32515053 266 + unclassified non-coding RNA gene predicted gene, 24371
Tssr36706 4 32527090 to 32527113 23 + TSS region transcription start site region 36706
Bach2os 4 32559680 to 32571662 11982 - antisense lncRNA gene BTB and CNC homology 2, opposite strand
Tssr41160 4 32571663 to 32571686 23 - TSS region transcription start site region 41160
Gja10 4 32600865 to 32602382 1517 - protein coding gene gap junction protein, alpha 10
Gm11933 4 32611351 to 32611725 374 + pseudogene predicted gene 11933
Cpgi14102 4 32614985 to 32616015 1030 CpG island CpG island 14102
Tssr36707 4 32615428 to 32615468 40 + TSS region transcription start site region 36707
Casp8ap2 4 32615470 to 32653271 37801 + protein coding gene caspase 8 associated protein 2
Tssr36708 4 32615477 to 32615487 10 + TSS region transcription start site region 36708
Tssr36709 4 32615489 to 32615505 16 + TSS region transcription start site region 36709
A130074J08Rik 4 32617499 to 32620659 3160 unclassified gene RIKEN cDNA A130074J08 gene
Tssr36710 4 32623985 to 32623989 4 + TSS region transcription start site region 36710
Tssr36711 4 32626872 to 32626891 19 + TSS region transcription start site region 36711
Tssr1131 4 32652768 to 32652785 17 + TSS region transcription start site region 1131
Gm11936 4 32655929 to 32656088 159 - pseudogene predicted gene 11936
Cpgi14103 4 32656706 to 32657622 916 CpG island CpG island 14103
Tssr36712 4 32657107 to 32657166 59 + TSS region transcription start site region 36712
Mdn1 4 32657119 to 32775217 118098 + protein coding gene midasin AAA ATPase 1
Tssr36713 4 32657184 to 32657194 10 + TSS region transcription start site region 36713
Tssr36714 4 32672547 to 32672559 12 + TSS region transcription start site region 36714
Tssr36715 4 32723003 to 32723016 13 + TSS region transcription start site region 36715
Tssr36716 4 32723042 to 32723051 9 + TSS region transcription start site region 36716
Tssr36717 4 32733113 to 32733118 5 + TSS region transcription start site region 36717
Tssr36718 4 32750691 to 32750695 4 + TSS region transcription start site region 36718
Tssr36719 4 32754429 to 32754442 13 + TSS region transcription start site region 36719
Tssr36720 4 32759111 to 32759123 12 + TSS region transcription start site region 36720
Tssr36721 4 32768331 to 32768345 14 + TSS region transcription start site region 36721
Gm42267 4 32791267 to 32792684 1417 - protein coding gene predicted gene, 42267
Cpgi14104 4 32799899 to 32800587 688 CpG island CpG island 14104
Tssr36722 4 32800246 to 32800289 43 + TSS region transcription start site region 36722
Lyrm2 4 32800253 to 32801559 1306 + protein coding gene LYR motif containing 2
Ankrd6 4 32804035 to 32950841 146806 - protein coding gene ankyrin repeat domain 6
Cpgi14105 4 32864134 to 32864583 449 CpG island CpG island 14105
Tssr41161 4 32864600 to 32864616 16 - TSS region transcription start site region 41161
Gm11941 4 32892686 to 32893295 609 + pseudogene predicted gene 11941
Tssr41162 4 32923390 to 32923436 46 - TSS region transcription start site region 41162
Tssr41163 4 32923517 to 32923530 13 - TSS region transcription start site region 41163
Cpgi14106 4 32950353 to 32951364 1011 CpG island CpG island 14106
Tssr41164 4 32950813 to 32950866 53 - TSS region transcription start site region 41164
Cpgi14107 4 32951639 to 32951930 291 CpG island CpG island 14107
Cpgi14108 4 32964736 to 32964962 226 CpG island CpG island 14108
Tssr36723 4 32964767 to 32964818 51 + TSS region transcription start site region 36723
Gm11942 4 32964888 to 32965232 344 + pseudogene predicted gene 11942
Cpgi14109 4 32982833 to 32984078 1245 CpG island CpG island 14109
Tssr36724 4 32982983 to 32983003 20 + TSS region transcription start site region 36724
Tssr36725 4 32983008 to 32983039 31 + TSS region transcription start site region 36725
Rragd 4 32983037 to 33022180 39143 + protein coding gene Ras-related GTP binding D
Tssr36726 4 32983283 to 32983308 25 + TSS region transcription start site region 36726
Tssr36727 4 32983311 to 32983339 28 + TSS region transcription start site region 36727
Tssr36728 4 32983359 to 32983400 41 + TSS region transcription start site region 36728
Tssr36729 4 32983417 to 32983428 11 + TSS region transcription start site region 36729
Tssr36730 4 32983494 to 32983503 9 + TSS region transcription start site region 36730
Tssr36731 4 32983523 to 32983534 11 + TSS region transcription start site region 36731
Tssr41165 4 32987062 to 32987103 41 - TSS region transcription start site region 41165
Gm11943 4 33001995 to 33002321 326 - pseudogene predicted gene 11943
4933421O10Rik 4 33027142 to 33031323 4181 - lncRNA gene RIKEN cDNA 4933421O10 gene
Cpgi14110 4 33030637 to 33032027 1390 CpG island CpG island 14110
Tssr41166 4 33031254 to 33031272 18 - TSS region transcription start site region 41166
Tssr41167 4 33031282 to 33031294 12 - TSS region transcription start site region 41167
Tssr41168 4 33031295 to 33031354 59 - TSS region transcription start site region 41168
Tssr36732 4 33031371 to 33031524 153 + TSS region transcription start site region 36732
Ube2j1 4 33031416 to 33052363 20947 + protein coding gene ubiquitin-conjugating enzyme E2J 1
Tssr36733 4 33031527 to 33031556 29 + TSS region transcription start site region 36733
Tssr36734 4 33031724 to 33031740 16 + TSS region transcription start site region 36734
Tssr36735 4 33031748 to 33031765 17 + TSS region transcription start site region 36735
Tssr36736 4 33045174 to 33045188 14 + TSS region transcription start site region 36736
Gm11931 4 33053838 to 33054284 446 - pseudogene predicted gene 11931
Tssr36737 4 33056339 to 33056340 1 + TSS region transcription start site region 36737
Gabrr2 4 33062999 to 33095865 32866 + protein coding gene gamma-aminobutyric acid (GABA) C receptor, subunit rho 2
Tssr36738 4 33063278 to 33063297 19 + TSS region transcription start site region 36738
Tssr41169 4 33072936 to 33072949 13 - TSS region transcription start site region 41169
Tssr36739 4 33077372 to 33077379 7 + TSS region transcription start site region 36739
Tssr36740 4 33077388 to 33077417 29 + TSS region transcription start site region 36740
Tssr36741 4 33077425 to 33077434 9 + TSS region transcription start site region 36741
Tssr36742 4 33132503 to 33132513 10 + TSS region transcription start site region 36742
Tssr36743 4 33132552 to 33132561 9 + TSS region transcription start site region 36743
Gabrr1 4 33132556 to 33163588 31032 + protein coding gene gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
Cpgi14111 4 33146935 to 33147164 229 CpG island CpG island 14111
Cpgi14112 4 33152193 to 33152598 405 CpG island CpG island 14112