Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:23172680-26420310

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38450 4 23260784 to 23311024 50240 + lncRNA gene predicted gene, 38450
Gm11884 4 23387665 to 23397837 10172 + lincRNA gene predicted gene 11884
Gm31085 4 23468948 to 23514565 45617 - lncRNA gene predicted gene, 31085
Gm11888 4 23485277 to 23486020 743 + pseudogene predicted gene 11888
Gm11889 4 23517362 to 23518440 1078 - pseudogene predicted gene 11889
Cpgi14086 4 23519140 to 23519459 319 CpG island CpG island 14086
Gm25978 4 23626656 to 23626745 89 - miRNA gene predicted gene, 25978
D4Mit136 4 23627597 to 23627745 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 136
D4Mit96 4 23627655 to 23627834 179 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 96
Gm11890 4 23659928 to 23660344 416 - pseudogene predicted gene 11890
Gm31145 4 23689815 to 23835052 145237 - lncRNA gene predicted gene, 31145
Gm28448 4 23933488 to 23933954 466 - lincRNA gene predicted gene 28448
Tssr36634 4 24027800 to 24027810 10 + TSS region transcription start site region 36634
Gm11892 4 24238100 to 24239301 1201 + pseudogene predicted gene 11892
Tssr36635 4 24278782 to 24278783 1 + TSS region transcription start site region 36635
Aaom1 4 24322299 to 46332776 22010477 QTL autoimmune aoritis in MRL mice 1
D4Mit266 4 24322299 to 24322402 103 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 266
D4Mit211 4 24347053 to 24347198 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 211
D4Mit105.1 4 24401846 to 24401964 118 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 105.1
D4Mit105 4 24401966 to 24402094 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 105
Gm11891 4 24423477 to 24425192 1715 + pseudogene predicted gene 11891
Gm27243 4 24430370 to 24430890 520 - lincRNA gene predicted gene 27243
Tssr41097 4 24430555 to 24430586 31 - TSS region transcription start site region 41097
Tssr1127 4 24430730 to 24430742 12 - TSS region transcription start site region 1127
Tssr41098 4 24430838 to 24430855 17 - TSS region transcription start site region 41098
Cpgi14087 4 24496092 to 24497003 911 CpG island CpG island 14087
Tssr36636 4 24496434 to 24496499 65 + TSS region transcription start site region 36636
Mms22l 4 24496451 to 24602950 106499 + protein coding gene MMS22-like, DNA repair protein
Tssr36637 4 24556692 to 24556701 9 + TSS region transcription start site region 36637
Tssr36638 4 24585464 to 24585478 14 + TSS region transcription start site region 36638
Klhl32 4 24616226 to 24851113 234887 - protein coding gene kelch-like 32
Gm31436 4 24668331 to 24674095 5764 + lncRNA gene predicted gene, 31436
Cpgi14088 4 24792544 to 24792709 165 CpG island CpG island 14088
Gm11899 4 24792680 to 24800310 7630 + antisense lncRNA gene predicted gene 11899
Tssr36639 4 24799894 to 24799895 1 + TSS region transcription start site region 36639
Cpgi14089 4 24850602 to 24851435 833 CpG island CpG island 14089
Tssr41099 4 24850872 to 24850916 44 - TSS region transcription start site region 41099
Tssr41100 4 24851079 to 24851112 33 - TSS region transcription start site region 41100
Gm31379 4 24851260 to 24879267 28007 + lncRNA gene predicted gene, 31379
Gm46848 4 24881176 to 24897950 16774 - lncRNA gene predicted gene, 46848
Tssr36640 4 24894873 to 24894877 4 + TSS region transcription start site region 36640
4932702M13Rik 4 24894879 to 24897974 3095 unclassified gene RIKEN cDNA 4932702M13 gene
Cpgi14090 4 24897784 to 24898472 688 CpG island CpG island 14090
Tssr36641 4 24898080 to 24898158 78 + TSS region transcription start site region 36641
Ndufaf4 4 24898083 to 24905001 6918 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 4
D4Mit191 4 24948247 to 24948367 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 191
C230012O17Rik 4 24960790 to 24967449 6659 - unclassified non-coding RNA gene RIKEN cDNA C230012O17 gene
Cpgi14091 4 24966061 to 24967139 1078 CpG island CpG island 14091
Tssr36642 4 24966428 to 24966502 74 + TSS region transcription start site region 36642
Gm11906 4 24966517 to 25271099 304582 + unclassified non-coding RNA gene predicted gene 11906
Gpr63 4 24966540 to 25009233 42693 + protein coding gene G protein-coupled receptor 63
Tssr36643 4 24972464 to 24972469 5 + TSS region transcription start site region 36643
Tssr36644 4 24972508 to 24972521 13 + TSS region transcription start site region 36644
9330118A15Rik 4 25010051 to 25012724 2673 unclassified gene RIKEN cDNA 9330118A15 gene
Tssr36645 4 25010380 to 25010385 5 + TSS region transcription start site region 36645
Fhl5 4 25199908 to 25242876 42968 - protein coding gene four and a half LIM domains 5
Tssr41101 4 25242256 to 25242271 15 - TSS region transcription start site region 41101
Tssr41102 4 25242825 to 25242830 5 - TSS region transcription start site region 41102
Tssr41103 4 25242833 to 25242873 40 - TSS region transcription start site region 41103
Ufl1 4 25248600 to 25281821 33221 - protein coding gene UFM1 specific ligase 1
Cpgi14092 4 25281337 to 25282052 715 CpG island CpG island 14092
Tssr41104 4 25281752 to 25281800 48 - TSS region transcription start site region 41104
Tssr41105 4 25281801 to 25281830 29 - TSS region transcription start site region 41105
Tssr41106 4 25281842 to 25281853 11 - TSS region transcription start site region 41106
Tssr1128 4 25307773 to 25307784 11 + TSS region transcription start site region 1128
Prdx6-ps2 4 25307830 to 25308523 693 + pseudogene peroxiredoxin 6 pseudogene 2
Tssr36646 4 25340413 to 25340414 1 + TSS region transcription start site region 36646
Gm11897 4 25353702 to 25354529 827 - pseudogene predicted gene 11897
Gm11894 4 25419349 to 25419676 327 + pseudogene predicted gene 11894
Gm25975 4 25513451 to 25513575 124 - snoRNA gene predicted gene, 25975
Gm11896 4 25538850 to 25539658 808 + pseudogene predicted gene 11896
Gm11893 4 25541791 to 25542281 490 - pseudogene predicted gene 11893
Gm24977 4 25566660 to 25566822 162 - snRNA gene predicted gene, 24977
Fut9 4 25609333 to 25800003 190670 - protein coding gene fucosyltransferase 9
Tssr41107 4 25614972 to 25614984 12 - TSS region transcription start site region 41107
Tssr41108 4 25615411 to 25615413 2 - TSS region transcription start site region 41108
Tssr41109 4 25615679 to 25615690 11 - TSS region transcription start site region 41109
Tssr41110 4 25666414 to 25666418 4 - TSS region transcription start site region 41110
Ses8 4 25683240 to 25683429 189 QTL salmonella enteritidis susceptibility 8
Ltq2 4 25683240 to 25683429 189 QTL lung tumor QTL 2
Triglq1 4 25683240 to 25683429 189 QTL triglyceride QTL 1
Lxw1 4 25683240 to 25683429 189 QTL lupus BXSB x NZW 1
Ssrq5 4 25683240 to 25683430 190 QTL stress response QTL 5
Wta1 4 25683240 to 25683429 189 QTL weight adult 1
D4Mit2 4 25683240 to 25683429 189 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 2
D4Mit361 4 25683251 to 25683430 179 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 361
Tssr41111 4 25792901 to 25792905 4 - TSS region transcription start site region 41111
Cpgi14093 4 25799314 to 25800367 1053 CpG island CpG island 14093
Tssr41112 4 25799789 to 25799863 74 - TSS region transcription start site region 41112
Tssr41113 4 25800083 to 25800104 21 - TSS region transcription start site region 41113
Tssr41114 4 25800213 to 25800224 11 - TSS region transcription start site region 41114
Tssr41115 4 25800239 to 25800266 27 - TSS region transcription start site region 41115
Tssr41116 4 25800286 to 25800306 20 - TSS region transcription start site region 41116
Tssr41117 4 25800402 to 25800405 3 - TSS region transcription start site region 41117
Tssr41118 4 25800418 to 25800427 9 - TSS region transcription start site region 41118
Tssr41119 4 25800434 to 25800465 31 - TSS region transcription start site region 41119
Gm24042 4 25819671 to 25819773 102 - snRNA gene predicted gene, 24042
Gm42263 4 25845158 to 25853414 8256 - lncRNA gene predicted gene, 42263
Gm11898 4 25854515 to 25854899 384 - pseudogene predicted gene 11898
Gm26067 4 25861239 to 25861348 109 - miRNA gene predicted gene, 26067
Gm11895 4 25867989 to 25868455 466 - pseudogene predicted gene 11895
Tssr41120 4 25895631 to 25895639 8 - TSS region transcription start site region 41120
Gm24965 4 25940365 to 25940470 105 + snRNA gene predicted gene, 24965
Opl3m1 4 26227119 to 26227119 0 QTL open field locomotion in the first three minutes 1
D4Ertd582e 4 26248764 to 26249004 240 DNA segment DNA segment, Chr 4, ERATO Doi 582, expressed
Manea 4 26324506 to 26346652 22146 - protein coding gene mannosidase, endo-alpha
Tssr41121 4 26332043 to 26332047 4 - TSS region transcription start site region 41121
Cpgi14094 4 26346343 to 26347050 707 CpG island CpG island 14094
Tssr41122 4 26346635 to 26346678 43 - TSS region transcription start site region 41122
Tssr41123 4 26346807 to 26346840 33 - TSS region transcription start site region 41123
Tssr41124 4 26346841 to 26346874 33 - TSS region transcription start site region 41124
Tssr41125 4 26346882 to 26346901 19 - TSS region transcription start site region 41125
Bhmt-ps1 4 26368984 to 26370207 1223 - pseudogene betaine-homocysteine methyltransferase, pseudogene 1