Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:21877655-25377834

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14076 4 21879429 to 21880344 915 CpG island CpG island 14076
Tssr36623 4 21879662 to 21879702 40 + TSS region transcription start site region 36623
Coq3 4 21879675 to 21912163 32488 + protein coding gene coenzyme Q3 methyltransferase
Tssr41087 4 21890654 to 21890660 6 - TSS region transcription start site region 41087
Cpgi14077 4 21930874 to 21931982 1108 CpG island CpG island 14077
Tssr36624 4 21931100 to 21931164 64 + TSS region transcription start site region 36624
Tssr36625 4 21931291 to 21931366 75 + TSS region transcription start site region 36625
Faxc 4 21931329 to 21996839 65510 + protein coding gene failed axon connections homolog
Tssr36626 4 21931500 to 21931511 11 + TSS region transcription start site region 36626
Tssr36627 4 21931683 to 21931728 45 + TSS region transcription start site region 36627
Tssr36628 4 21964707 to 21964709 2 + TSS region transcription start site region 36628
Gm11885 4 22006879 to 22008183 1304 - pseudogene predicted gene 11885
Gm42260 4 22024034 to 22040372 16338 + lncRNA gene predicted gene, 42260
Tssr36629 4 22035612 to 22035615 3 + TSS region transcription start site region 36629
Gm11880 4 22117134 to 22117532 398 - pseudogene predicted gene 11880
Gm42261 4 22248631 to 22357437 108806 - lncRNA gene predicted gene, 42261
Gm11882 4 22275833 to 22276338 505 + pseudogene predicted gene 11882
Cpgi14078 4 22357331 to 22358241 910 CpG island CpG island 14078
Fbxl4 4 22357543 to 22434091 76548 + protein coding gene F-box and leucine-rich repeat protein 4
Tssr36630 4 22357544 to 22357618 74 + TSS region transcription start site region 36630
Tssr36631 4 22371136 to 22371144 8 + TSS region transcription start site region 36631
Gm24607 4 22396570 to 22396702 132 + snoRNA gene predicted gene, 24607
Gm37900 4 22408291 to 22412095 3804 + unclassified gene predicted gene, 37900
Cpgi14079 4 22477529 to 22477904 375 CpG island CpG island 14079
Cpgi14080 4 22480022 to 22480271 249 CpG island CpG island 14080
Pou3f2 4 22482780 to 22488366 5586 - protein coding gene POU domain, class 3, transcription factor 2
D4Mit171 4 22486284 to 22486589 305 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 171
Tssr41088 4 22486561 to 22486572 11 - TSS region transcription start site region 41088
Tssr41089 4 22486602 to 22486613 11 - TSS region transcription start site region 41089
Tssr41090 4 22486679 to 22486685 6 - TSS region transcription start site region 41090
Tssr41091 4 22486719 to 22486734 15 - TSS region transcription start site region 41091
Tssr41092 4 22486740 to 22486768 28 - TSS region transcription start site region 41092
Cpgi14081 4 22486749 to 22488772 2023 CpG island CpG island 14081
Tssr36632 4 22486940 to 22486952 12 + TSS region transcription start site region 36632
Tssr41093 4 22488143 to 22488160 17 - TSS region transcription start site region 41093
Tssr41094 4 22488296 to 22488359 63 - TSS region transcription start site region 41094
Tssr41095 4 22488453 to 22488469 16 - TSS region transcription start site region 41095
Cpgi14082 4 22489359 to 22490603 1244 CpG island CpG island 14082
Gm30731 4 22490548 to 22493126 2578 + lincRNA gene predicted gene, 30731
Cpgi14083 4 22491064 to 22491591 527 CpG island CpG island 14083
Cpgi14084 4 22494721 to 22495257 536 CpG island CpG island 14084
Cpgi14085 4 22497840 to 22498805 965 CpG island CpG island 14085
Tssr36633 4 22519588 to 22519601 13 + TSS region transcription start site region 36633
Gm11878 4 22519628 to 22520027 399 + pseudogene predicted gene 11878
Gm11881 4 22528438 to 22529009 571 - pseudogene predicted gene 11881
Gm11879 4 22704057 to 22704758 701 + pseudogene predicted gene 11879
Gm24078 4 22747131 to 22747233 102 + miRNA gene predicted gene, 24078
Gm42262 4 22771853 to 22836256 64403 - lncRNA gene predicted gene, 42262
Tssr41096 4 22835480 to 22835499 19 - TSS region transcription start site region 41096
1700025O08Rik 4 22928167 to 22938435 10268 - lincRNA gene RIKEN cDNA 1700025O08 gene
Gm30886 4 22938575 to 22979509 40934 + lncRNA gene predicted gene, 30886
Gm38450 4 23260784 to 23311024 50240 + lncRNA gene predicted gene, 38450
Gm11884 4 23387665 to 23397837 10172 + lincRNA gene predicted gene 11884
Gm31085 4 23468948 to 23514565 45617 - lncRNA gene predicted gene, 31085
Gm11888 4 23485277 to 23486020 743 + pseudogene predicted gene 11888
Gm11889 4 23517362 to 23518440 1078 - pseudogene predicted gene 11889
Cpgi14086 4 23519140 to 23519459 319 CpG island CpG island 14086
Gm25978 4 23626656 to 23626745 89 - miRNA gene predicted gene, 25978
D4Mit136 4 23627597 to 23627745 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 136
D4Mit96 4 23627655 to 23627834 179 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 96
Gm11890 4 23659928 to 23660344 416 - pseudogene predicted gene 11890
Gm31145 4 23689815 to 23835052 145237 - lncRNA gene predicted gene, 31145
Gm28448 4 23933488 to 23933954 466 - lincRNA gene predicted gene 28448
Tssr36634 4 24027800 to 24027810 10 + TSS region transcription start site region 36634
Gm11892 4 24238100 to 24239301 1201 + pseudogene predicted gene 11892
Tssr36635 4 24278782 to 24278783 1 + TSS region transcription start site region 36635
D4Mit266 4 24322299 to 24322402 103 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 266
Aaom1 4 24322299 to 46332776 22010477 QTL autoimmune aoritis in MRL mice 1
D4Mit211 4 24347053 to 24347198 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 211
D4Mit105.1 4 24401846 to 24401964 118 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 105.1
D4Mit105 4 24401966 to 24402094 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 105
Gm11891 4 24423477 to 24425192 1715 + pseudogene predicted gene 11891
Gm27243 4 24430370 to 24430890 520 - lincRNA gene predicted gene 27243
Tssr41097 4 24430555 to 24430586 31 - TSS region transcription start site region 41097
Tssr1127 4 24430730 to 24430742 12 - TSS region transcription start site region 1127
Tssr41098 4 24430838 to 24430855 17 - TSS region transcription start site region 41098
Cpgi14087 4 24496092 to 24497003 911 CpG island CpG island 14087
Tssr36636 4 24496434 to 24496499 65 + TSS region transcription start site region 36636
Mms22l 4 24496451 to 24602950 106499 + protein coding gene MMS22-like, DNA repair protein
Tssr36637 4 24556692 to 24556701 9 + TSS region transcription start site region 36637
Tssr36638 4 24585464 to 24585478 14 + TSS region transcription start site region 36638
Klhl32 4 24616226 to 24851113 234887 - protein coding gene kelch-like 32
Gm31436 4 24668331 to 24674095 5764 + lncRNA gene predicted gene, 31436
Cpgi14088 4 24792544 to 24792709 165 CpG island CpG island 14088
Gm11899 4 24792680 to 24800310 7630 + antisense lncRNA gene predicted gene 11899
Tssr36639 4 24799894 to 24799895 1 + TSS region transcription start site region 36639
Cpgi14089 4 24850602 to 24851435 833 CpG island CpG island 14089
Tssr41099 4 24850872 to 24850916 44 - TSS region transcription start site region 41099
Tssr41100 4 24851079 to 24851112 33 - TSS region transcription start site region 41100
Gm31379 4 24851260 to 24879267 28007 + lncRNA gene predicted gene, 31379
Gm46848 4 24881176 to 24897950 16774 - lncRNA gene predicted gene, 46848
Tssr36640 4 24894873 to 24894877 4 + TSS region transcription start site region 36640
4932702M13Rik 4 24894879 to 24897974 3095 unclassified gene RIKEN cDNA 4932702M13 gene
Cpgi14090 4 24897784 to 24898472 688 CpG island CpG island 14090
Tssr36641 4 24898080 to 24898158 78 + TSS region transcription start site region 36641
Ndufaf4 4 24898083 to 24905001 6918 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 4
D4Mit191 4 24948247 to 24948367 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 191
C230012O17Rik 4 24960790 to 24967449 6659 - unclassified non-coding RNA gene RIKEN cDNA C230012O17 gene
Cpgi14091 4 24966061 to 24967139 1078 CpG island CpG island 14091
Tssr36642 4 24966428 to 24966502 74 + TSS region transcription start site region 36642
Gm11906 4 24966517 to 25271099 304582 + unclassified non-coding RNA gene predicted gene 11906
Gpr63 4 24966540 to 25009233 42693 + protein coding gene G protein-coupled receptor 63
Tssr36643 4 24972464 to 24972469 5 + TSS region transcription start site region 36643
Tssr36644 4 24972508 to 24972521 13 + TSS region transcription start site region 36644
9330118A15Rik 4 25010051 to 25012724 2673 unclassified gene RIKEN cDNA 9330118A15 gene
Tssr36645 4 25010380 to 25010385 5 + TSS region transcription start site region 36645
Fhl5 4 25199908 to 25242876 42968 - protein coding gene four and a half LIM domains 5
Tssr41101 4 25242256 to 25242271 15 - TSS region transcription start site region 41101
Tssr41102 4 25242825 to 25242830 5 - TSS region transcription start site region 41102
Tssr41103 4 25242833 to 25242873 40 - TSS region transcription start site region 41103
Ufl1 4 25248600 to 25281821 33221 - protein coding gene UFM1 specific ligase 1
Cpgi14092 4 25281337 to 25282052 715 CpG island CpG island 14092
Tssr41104 4 25281752 to 25281800 48 - TSS region transcription start site region 41104
Tssr41105 4 25281801 to 25281830 29 - TSS region transcription start site region 41105
Tssr41106 4 25281842 to 25281853 11 - TSS region transcription start site region 41106
Tssr1128 4 25307773 to 25307784 11 + TSS region transcription start site region 1128
Prdx6-ps2 4 25307830 to 25308523 693 + pseudogene peroxiredoxin 6 pseudogene 2
Tssr36646 4 25340413 to 25340414 1 + TSS region transcription start site region 36646
Gm11897 4 25353702 to 25354529 827 - pseudogene predicted gene 11897