Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:21779588-23259601

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp45 4 21767161 to 21837872 70711 + protein coding gene ubiquitin specific petidase 45
4930528A17Rik 4 21846327 to 21848448 2121 - lncRNA gene RIKEN cDNA 4930528A17 gene
Pnisr 4 21847583 to 21876475 28892 + protein coding gene PNN interacting serine/arginine-rich
Cpgi14075 4 21847599 to 21848652 1053 CpG island CpG island 14075
Tssr36612 4 21848039 to 21848077 38 + TSS region transcription start site region 36612
Tssr41085 4 21848364 to 21848374 10 - TSS region transcription start site region 41085
Tssr41086 4 21848416 to 21848455 39 - TSS region transcription start site region 41086
Tssr36613 4 21862140 to 21862151 11 + TSS region transcription start site region 36613
Tssr36614 4 21865887 to 21865900 13 + TSS region transcription start site region 36614
Tssr36615 4 21869694 to 21869699 5 + TSS region transcription start site region 36615
Tssr36616 4 21871032 to 21871036 4 + TSS region transcription start site region 36616
Tssr36617 4 21873776 to 21873786 10 + TSS region transcription start site region 36617
Tssr36618 4 21874016 to 21874031 15 + TSS region transcription start site region 36618
Tssr36619 4 21874035 to 21874048 13 + TSS region transcription start site region 36619
Tssr36620 4 21874101 to 21874121 20 + TSS region transcription start site region 36620
Tssr36621 4 21874422 to 21874442 20 + TSS region transcription start site region 36621
Tssr36622 4 21874530 to 21874541 11 + TSS region transcription start site region 36622
Cpgi14076 4 21879429 to 21880344 915 CpG island CpG island 14076
Tssr36623 4 21879662 to 21879702 40 + TSS region transcription start site region 36623
Coq3 4 21879675 to 21912163 32488 + protein coding gene coenzyme Q3 methyltransferase
Tssr41087 4 21890654 to 21890660 6 - TSS region transcription start site region 41087
Cpgi14077 4 21930874 to 21931982 1108 CpG island CpG island 14077
Tssr36624 4 21931100 to 21931164 64 + TSS region transcription start site region 36624
Tssr36625 4 21931291 to 21931366 75 + TSS region transcription start site region 36625
Faxc 4 21931329 to 21996839 65510 + protein coding gene failed axon connections homolog
Tssr36626 4 21931500 to 21931511 11 + TSS region transcription start site region 36626
Tssr36627 4 21931683 to 21931728 45 + TSS region transcription start site region 36627
Tssr36628 4 21964707 to 21964709 2 + TSS region transcription start site region 36628
Gm11885 4 22006879 to 22008183 1304 - pseudogene predicted gene 11885
Gm42260 4 22024034 to 22040372 16338 + lncRNA gene predicted gene, 42260
Tssr36629 4 22035612 to 22035615 3 + TSS region transcription start site region 36629
Gm11880 4 22117134 to 22117532 398 - pseudogene predicted gene 11880
Gm42261 4 22248631 to 22357437 108806 - lncRNA gene predicted gene, 42261
Gm11882 4 22275833 to 22276338 505 + pseudogene predicted gene 11882
Cpgi14078 4 22357331 to 22358241 910 CpG island CpG island 14078
Fbxl4 4 22357543 to 22434091 76548 + protein coding gene F-box and leucine-rich repeat protein 4
Tssr36630 4 22357544 to 22357618 74 + TSS region transcription start site region 36630
Tssr36631 4 22371136 to 22371144 8 + TSS region transcription start site region 36631
Gm24607 4 22396570 to 22396702 132 + snoRNA gene predicted gene, 24607
Gm37900 4 22408291 to 22412095 3804 + unclassified gene predicted gene, 37900
Cpgi14079 4 22477529 to 22477904 375 CpG island CpG island 14079
Cpgi14080 4 22480022 to 22480271 249 CpG island CpG island 14080
Pou3f2 4 22482780 to 22488366 5586 - protein coding gene POU domain, class 3, transcription factor 2
D4Mit171 4 22486284 to 22486589 305 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 171
Tssr41088 4 22486561 to 22486572 11 - TSS region transcription start site region 41088
Tssr41089 4 22486602 to 22486613 11 - TSS region transcription start site region 41089
Tssr41090 4 22486679 to 22486685 6 - TSS region transcription start site region 41090
Tssr41091 4 22486719 to 22486734 15 - TSS region transcription start site region 41091
Tssr41092 4 22486740 to 22486768 28 - TSS region transcription start site region 41092
Cpgi14081 4 22486749 to 22488772 2023 CpG island CpG island 14081
Tssr36632 4 22486940 to 22486952 12 + TSS region transcription start site region 36632
Tssr41093 4 22488143 to 22488160 17 - TSS region transcription start site region 41093
Tssr41094 4 22488296 to 22488359 63 - TSS region transcription start site region 41094
Tssr41095 4 22488453 to 22488469 16 - TSS region transcription start site region 41095
Cpgi14082 4 22489359 to 22490603 1244 CpG island CpG island 14082
Gm30731 4 22490548 to 22493126 2578 + lincRNA gene predicted gene, 30731
Cpgi14083 4 22491064 to 22491591 527 CpG island CpG island 14083
Cpgi14084 4 22494721 to 22495257 536 CpG island CpG island 14084
Cpgi14085 4 22497840 to 22498805 965 CpG island CpG island 14085
Tssr36633 4 22519588 to 22519601 13 + TSS region transcription start site region 36633
Gm11878 4 22519628 to 22520027 399 + pseudogene predicted gene 11878
Gm11881 4 22528438 to 22529009 571 - pseudogene predicted gene 11881
Gm11879 4 22704057 to 22704758 701 + pseudogene predicted gene 11879
Gm24078 4 22747131 to 22747233 102 + miRNA gene predicted gene, 24078
Gm42262 4 22771853 to 22836256 64403 - lncRNA gene predicted gene, 42262
Tssr41096 4 22835480 to 22835499 19 - TSS region transcription start site region 41096
1700025O08Rik 4 22928167 to 22938435 10268 - lincRNA gene RIKEN cDNA 1700025O08 gene
Gm30886 4 22938575 to 22979509 40934 + lncRNA gene predicted gene, 30886