Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:21599359-23380603

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11875 4 21626380 to 21627178 798 + pseudogene predicted gene 11875
Gm11876 4 21671040 to 21671308 268 + pseudogene predicted gene 11876
Cpgi14068 4 21674166 to 21674470 304 CpG island CpG island 14068
Prdm13 4 21677480 to 21685963 8483 - protein coding gene PR domain containing 13
Cpgi14069 4 21678028 to 21680107 2079 CpG island CpG island 14069
Cpgi14070 4 21685484 to 21685978 494 CpG island CpG island 14070
Tssr41079 4 21685782 to 21685805 23 - TSS region transcription start site region 41079
Cpgi14071 4 21688398 to 21689540 1142 CpG island CpG island 14071
Tssr41080 4 21722992 to 21723023 31 - TSS region transcription start site region 41080
Cpgi14072 4 21727412 to 21728077 665 CpG island CpG island 14072
Tssr36606 4 21727695 to 21727716 21 + TSS region transcription start site region 36606
Ccnc 4 21727701 to 21759922 32221 + protein coding gene cyclin C
Tssr36607 4 21727728 to 21727790 62 + TSS region transcription start site region 36607
D4Mit98 4 21736754 to 21736922 168 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 98
D4Mit345 4 21736800 to 21736922 122 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 345
D4Mit345.1 4 21736912 to 21737052 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 345.1
Tssr36608 4 21747711 to 21747734 23 + TSS region transcription start site region 36608
Tssr36609 4 21749703 to 21749707 4 + TSS region transcription start site region 36609
Tstd3 4 21757382 to 21767211 9829 - protein coding gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 3
Cpgi14073 4 21766855 to 21767200 345 CpG island CpG island 14073
Tssr41081 4 21767115 to 21767142 27 - TSS region transcription start site region 41081
Tssr41082 4 21767144 to 21767164 20 - TSS region transcription start site region 41082
Tssr36610 4 21767155 to 21767201 46 + TSS region transcription start site region 36610
Usp45 4 21767161 to 21837872 70711 + protein coding gene ubiquitin specific petidase 45
Tssr41083 4 21767173 to 21767217 44 - TSS region transcription start site region 41083
Tssr41084 4 21772409 to 21772417 8 - TSS region transcription start site region 41084
Cpgi14074 4 21776087 to 21776705 618 CpG island CpG island 14074
Tssr36611 4 21776261 to 21776297 36 + TSS region transcription start site region 36611
4930528A17Rik 4 21846327 to 21848448 2121 - lncRNA gene RIKEN cDNA 4930528A17 gene
Pnisr 4 21847583 to 21876475 28892 + protein coding gene PNN interacting serine/arginine-rich
Cpgi14075 4 21847599 to 21848652 1053 CpG island CpG island 14075
Tssr36612 4 21848039 to 21848077 38 + TSS region transcription start site region 36612
Tssr41085 4 21848364 to 21848374 10 - TSS region transcription start site region 41085
Tssr41086 4 21848416 to 21848455 39 - TSS region transcription start site region 41086
Tssr36613 4 21862140 to 21862151 11 + TSS region transcription start site region 36613
Tssr36614 4 21865887 to 21865900 13 + TSS region transcription start site region 36614
Tssr36615 4 21869694 to 21869699 5 + TSS region transcription start site region 36615
Tssr36616 4 21871032 to 21871036 4 + TSS region transcription start site region 36616
Tssr36617 4 21873776 to 21873786 10 + TSS region transcription start site region 36617
Tssr36618 4 21874016 to 21874031 15 + TSS region transcription start site region 36618
Tssr36619 4 21874035 to 21874048 13 + TSS region transcription start site region 36619
Tssr36620 4 21874101 to 21874121 20 + TSS region transcription start site region 36620
Tssr36621 4 21874422 to 21874442 20 + TSS region transcription start site region 36621
Tssr36622 4 21874530 to 21874541 11 + TSS region transcription start site region 36622
Cpgi14076 4 21879429 to 21880344 915 CpG island CpG island 14076
Tssr36623 4 21879662 to 21879702 40 + TSS region transcription start site region 36623
Coq3 4 21879675 to 21912163 32488 + protein coding gene coenzyme Q3 methyltransferase
Tssr41087 4 21890654 to 21890660 6 - TSS region transcription start site region 41087
Cpgi14077 4 21930874 to 21931982 1108 CpG island CpG island 14077
Tssr36624 4 21931100 to 21931164 64 + TSS region transcription start site region 36624
Tssr36625 4 21931291 to 21931366 75 + TSS region transcription start site region 36625
Faxc 4 21931329 to 21996839 65510 + protein coding gene failed axon connections homolog
Tssr36626 4 21931500 to 21931511 11 + TSS region transcription start site region 36626
Tssr36627 4 21931683 to 21931728 45 + TSS region transcription start site region 36627
Tssr36628 4 21964707 to 21964709 2 + TSS region transcription start site region 36628
Gm11885 4 22006879 to 22008183 1304 - pseudogene predicted gene 11885
Gm42260 4 22024034 to 22040372 16338 + lncRNA gene predicted gene, 42260
Tssr36629 4 22035612 to 22035615 3 + TSS region transcription start site region 36629
Gm11880 4 22117134 to 22117532 398 - pseudogene predicted gene 11880
Gm42261 4 22248631 to 22357437 108806 - lncRNA gene predicted gene, 42261
Gm11882 4 22275833 to 22276338 505 + pseudogene predicted gene 11882
Cpgi14078 4 22357331 to 22358241 910 CpG island CpG island 14078
Fbxl4 4 22357543 to 22434091 76548 + protein coding gene F-box and leucine-rich repeat protein 4
Tssr36630 4 22357544 to 22357618 74 + TSS region transcription start site region 36630
Tssr36631 4 22371136 to 22371144 8 + TSS region transcription start site region 36631
Gm24607 4 22396570 to 22396702 132 + snoRNA gene predicted gene, 24607
Gm37900 4 22408291 to 22412095 3804 + unclassified gene predicted gene, 37900
Cpgi14079 4 22477529 to 22477904 375 CpG island CpG island 14079
Cpgi14080 4 22480022 to 22480271 249 CpG island CpG island 14080
Pou3f2 4 22482780 to 22488366 5586 - protein coding gene POU domain, class 3, transcription factor 2
D4Mit171 4 22486284 to 22486589 305 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 171
Tssr41088 4 22486561 to 22486572 11 - TSS region transcription start site region 41088
Tssr41089 4 22486602 to 22486613 11 - TSS region transcription start site region 41089
Tssr41090 4 22486679 to 22486685 6 - TSS region transcription start site region 41090
Tssr41091 4 22486719 to 22486734 15 - TSS region transcription start site region 41091
Tssr41092 4 22486740 to 22486768 28 - TSS region transcription start site region 41092
Cpgi14081 4 22486749 to 22488772 2023 CpG island CpG island 14081
Tssr36632 4 22486940 to 22486952 12 + TSS region transcription start site region 36632
Tssr41093 4 22488143 to 22488160 17 - TSS region transcription start site region 41093
Tssr41094 4 22488296 to 22488359 63 - TSS region transcription start site region 41094
Tssr41095 4 22488453 to 22488469 16 - TSS region transcription start site region 41095
Cpgi14082 4 22489359 to 22490603 1244 CpG island CpG island 14082
Gm30731 4 22490548 to 22493126 2578 + lincRNA gene predicted gene, 30731
Cpgi14083 4 22491064 to 22491591 527 CpG island CpG island 14083
Cpgi14084 4 22494721 to 22495257 536 CpG island CpG island 14084
Cpgi14085 4 22497840 to 22498805 965 CpG island CpG island 14085
Tssr36633 4 22519588 to 22519601 13 + TSS region transcription start site region 36633
Gm11878 4 22519628 to 22520027 399 + pseudogene predicted gene 11878
Gm11881 4 22528438 to 22529009 571 - pseudogene predicted gene 11881
Gm11879 4 22704057 to 22704758 701 + pseudogene predicted gene 11879
Gm24078 4 22747131 to 22747233 102 + miRNA gene predicted gene, 24078
Gm42262 4 22771853 to 22836256 64403 - lncRNA gene predicted gene, 42262
Tssr41096 4 22835480 to 22835499 19 - TSS region transcription start site region 41096
1700025O08Rik 4 22928167 to 22938435 10268 - lincRNA gene RIKEN cDNA 1700025O08 gene
Gm30886 4 22938575 to 22979509 40934 + lncRNA gene predicted gene, 30886
Gm38450 4 23260784 to 23311024 50240 + lncRNA gene predicted gene, 38450