Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:20778520-21878604

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nkain3 4 20118874 to 20778866 659992 - protein coding gene Na+/K+ transporting ATPase interacting 3
Cpgi14067 4 20777884 to 20778739 855 CpG island CpG island 14067
Tssr41073 4 20778527 to 20778593 66 - TSS region transcription start site region 41073
Tssr41074 4 20778696 to 20778707 11 - TSS region transcription start site region 41074
Tssr41075 4 20778709 to 20778730 21 - TSS region transcription start site region 41075
Tssr41076 4 20778852 to 20778876 24 - TSS region transcription start site region 41076
Tssr41077 4 20778885 to 20778907 22 - TSS region transcription start site region 41077
Tssr41078 4 20866887 to 20866892 5 - TSS region transcription start site region 41078
Gm11871 4 21009907 to 21010916 1009 - pseudogene predicted gene 11871
Gm22817 4 21270075 to 21270430 355 + ribozyme gene predicted gene, 22817
Gm25977 4 21328520 to 21328604 84 + snoRNA gene predicted gene, 25977
Gm11875 4 21626380 to 21627178 798 + pseudogene predicted gene 11875
Gm11876 4 21671040 to 21671308 268 + pseudogene predicted gene 11876
Cpgi14068 4 21674166 to 21674470 304 CpG island CpG island 14068
Prdm13 4 21677480 to 21685963 8483 - protein coding gene PR domain containing 13
Cpgi14069 4 21678028 to 21680107 2079 CpG island CpG island 14069
Cpgi14070 4 21685484 to 21685978 494 CpG island CpG island 14070
Tssr41079 4 21685782 to 21685805 23 - TSS region transcription start site region 41079
Cpgi14071 4 21688398 to 21689540 1142 CpG island CpG island 14071
Tssr41080 4 21722992 to 21723023 31 - TSS region transcription start site region 41080
Cpgi14072 4 21727412 to 21728077 665 CpG island CpG island 14072
Tssr36606 4 21727695 to 21727716 21 + TSS region transcription start site region 36606
Ccnc 4 21727701 to 21759922 32221 + protein coding gene cyclin C
Tssr36607 4 21727728 to 21727790 62 + TSS region transcription start site region 36607
D4Mit98 4 21736754 to 21736922 168 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 98
D4Mit345 4 21736800 to 21736922 122 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 345
D4Mit345.1 4 21736912 to 21737052 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 345.1
Tssr36608 4 21747711 to 21747734 23 + TSS region transcription start site region 36608
Tssr36609 4 21749703 to 21749707 4 + TSS region transcription start site region 36609
Tstd3 4 21757382 to 21767211 9829 - protein coding gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 3
Cpgi14073 4 21766855 to 21767200 345 CpG island CpG island 14073
Tssr41081 4 21767115 to 21767142 27 - TSS region transcription start site region 41081
Tssr41082 4 21767144 to 21767164 20 - TSS region transcription start site region 41082
Tssr36610 4 21767155 to 21767201 46 + TSS region transcription start site region 36610
Usp45 4 21767161 to 21837872 70711 + protein coding gene ubiquitin specific petidase 45
Tssr41083 4 21767173 to 21767217 44 - TSS region transcription start site region 41083
Tssr41084 4 21772409 to 21772417 8 - TSS region transcription start site region 41084
Cpgi14074 4 21776087 to 21776705 618 CpG island CpG island 14074
Tssr36611 4 21776261 to 21776297 36 + TSS region transcription start site region 36611
4930528A17Rik 4 21846327 to 21848448 2121 - lncRNA gene RIKEN cDNA 4930528A17 gene
Pnisr 4 21847583 to 21876475 28892 + protein coding gene PNN interacting serine/arginine-rich
Cpgi14075 4 21847599 to 21848652 1053 CpG island CpG island 14075
Tssr36612 4 21848039 to 21848077 38 + TSS region transcription start site region 36612
Tssr41085 4 21848364 to 21848374 10 - TSS region transcription start site region 41085
Tssr41086 4 21848416 to 21848455 39 - TSS region transcription start site region 41086
Tssr36613 4 21862140 to 21862151 11 + TSS region transcription start site region 36613
Tssr36614 4 21865887 to 21865900 13 + TSS region transcription start site region 36614
Tssr36615 4 21869694 to 21869699 5 + TSS region transcription start site region 36615
Tssr36616 4 21871032 to 21871036 4 + TSS region transcription start site region 36616
Tssr36617 4 21873776 to 21873786 10 + TSS region transcription start site region 36617
Tssr36618 4 21874016 to 21874031 15 + TSS region transcription start site region 36618
Tssr36619 4 21874035 to 21874048 13 + TSS region transcription start site region 36619
Tssr36620 4 21874101 to 21874121 20 + TSS region transcription start site region 36620
Tssr36621 4 21874422 to 21874442 20 + TSS region transcription start site region 36621
Tssr36622 4 21874530 to 21874541 11 + TSS region transcription start site region 36622