Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:19552728-23902790

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246 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpne3 4 19519254 to 19570108 50854 - protein coding gene copine III
Tssr41000 4 19553637 to 19553642 5 - TSS region transcription start site region 41000
Cpgi14062 4 19569294 to 19570227 933 CpG island CpG island 14062
Tssr41001 4 19570046 to 19570068 22 - TSS region transcription start site region 41001
Tssr41002 4 19570073 to 19570117 44 - TSS region transcription start site region 41002
Cpgi14063 4 19574923 to 19575607 684 CpG island CpG island 14063
Tssr36577 4 19575050 to 19575092 42 + TSS region transcription start site region 36577
Tssr36578 4 19575129 to 19575138 9 + TSS region transcription start site region 36578
Tssr36579 4 19575139 to 19575216 77 + TSS region transcription start site region 36579
Rmdn1 4 19575162 to 19606932 31770 + protein coding gene regulator of microtubule dynamics 1
Tssr36580 4 19575494 to 19575505 11 + TSS region transcription start site region 36580
Tssr36581 4 19575533 to 19575562 29 + TSS region transcription start site region 36581
Tssr36582 4 19575563 to 19575590 27 + TSS region transcription start site region 36582
Tssr36583 4 19575596 to 19575612 16 + TSS region transcription start site region 36583
Tssr36584 4 19584749 to 19584752 3 + TSS region transcription start site region 36584
Gm12353 4 19605451 to 19651130 45679 + protein coding gene predicted gene 12353
Wwp1 4 19608303 to 19708993 100690 - protein coding gene WW domain containing E3 ubiquitin protein ligase 1
Tssr41003 4 19608776 to 19608807 31 - TSS region transcription start site region 41003
Tssr41004 4 19611041 to 19611059 18 - TSS region transcription start site region 41004
Gm42259 4 19612906 to 19618278 5372 - lncRNA gene predicted gene, 42259
Tssr41005 4 19629999 to 19630032 33 - TSS region transcription start site region 41005
Tssr41006 4 19631987 to 19631994 7 - TSS region transcription start site region 41006
Tssr41007 4 19635306 to 19635343 37 - TSS region transcription start site region 41007
Tssr41008 4 19637201 to 19637211 10 - TSS region transcription start site region 41008
Tssr41009 4 19650163 to 19650184 21 - TSS region transcription start site region 41009
Tssr36585 4 19650300 to 19650323 23 + TSS region transcription start site region 36585
Tssr41010 4 19650379 to 19650401 22 - TSS region transcription start site region 41010
Tssr41011 4 19650424 to 19650445 21 - TSS region transcription start site region 41011
Tssr41012 4 19651997 to 19652001 4 - TSS region transcription start site region 41012
Tssr41013 4 19656197 to 19656207 10 - TSS region transcription start site region 41013
Tssr41014 4 19656213 to 19656226 13 - TSS region transcription start site region 41014
D4Dcr6 4 19656345 to 19656451 106 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 6
Tssr41015 4 19659609 to 19659635 26 - TSS region transcription start site region 41015
Tssr41016 4 19659648 to 19659662 14 - TSS region transcription start site region 41016
Tssr41017 4 19678846 to 19678850 4 - TSS region transcription start site region 41017
Tssr41018 4 19680352 to 19680383 31 - TSS region transcription start site region 41018
Tssr41019 4 19687874 to 19687890 16 - TSS region transcription start site region 41019
Tssr41020 4 19693879 to 19693891 12 - TSS region transcription start site region 41020
Tssr41021 4 19695279 to 19695285 6 - TSS region transcription start site region 41021
Tssr41022 4 19696697 to 19696747 50 - TSS region transcription start site region 41022
Tssr41023 4 19705159 to 19705163 4 - TSS region transcription start site region 41023
Cpgi14064 4 19708507 to 19709429 922 CpG island CpG island 14064
Tssr41024 4 19708539 to 19708542 3 - TSS region transcription start site region 41024
Tssr36586 4 19708583 to 19708599 16 + TSS region transcription start site region 36586
Tssr41025 4 19708922 to 19709004 82 - TSS region transcription start site region 41025
Tssr41026 4 19709019 to 19709030 11 - TSS region transcription start site region 41026
Tssr41027 4 19709102 to 19709120 18 - TSS region transcription start site region 41027
Tssr41028 4 19709137 to 19709163 26 - TSS region transcription start site region 41028
Tssr1125 4 19709173 to 19709180 7 - TSS region transcription start site region 1125
Tssr36587 4 19709321 to 19709341 20 + TSS region transcription start site region 36587
Gm12354 4 19716732 to 19720199 3467 - lincRNA gene predicted gene 12354
Tssr36588 4 19737363 to 19737382 19 + TSS region transcription start site region 36588
Tssr36589 4 19818722 to 19818743 21 + TSS region transcription start site region 36589
Slc7a13 4 19818727 to 19842213 23486 + protein coding gene solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
Tssr41029 4 19837945 to 19837951 6 - TSS region transcription start site region 41029
Tssr36590 4 19852130 to 19852133 3 + TSS region transcription start site region 36590
D4Mit135 4 19860602 to 19860747 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 135
Tssr36591 4 19872221 to 19872232 11 + TSS region transcription start site region 36591
Atp6v0d2 4 19876838 to 19922566 45728 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit D2
Tssr41030 4 19877129 to 19877142 13 - TSS region transcription start site region 41030
Tssr41031 4 19877194 to 19877204 10 - TSS region transcription start site region 41031
Tssr41032 4 19877211 to 19877221 10 - TSS region transcription start site region 41032
Tssr41033 4 19877250 to 19877287 37 - TSS region transcription start site region 41033
Tssr41034 4 19877291 to 19877319 28 - TSS region transcription start site region 41034
Tssr41035 4 19877326 to 19877345 19 - TSS region transcription start site region 41035
Tssr41036 4 19877353 to 19877395 42 - TSS region transcription start site region 41036
Tssr41037 4 19877475 to 19877483 8 - TSS region transcription start site region 41037
Tssr41038 4 19877541 to 19877552 11 - TSS region transcription start site region 41038
Tssr41039 4 19877553 to 19877580 27 - TSS region transcription start site region 41039
Tssr41040 4 19877595 to 19877613 18 - TSS region transcription start site region 41040
Tssr41041 4 19877622 to 19877627 5 - TSS region transcription start site region 41041
Tssr41042 4 19877629 to 19877643 14 - TSS region transcription start site region 41042
Tssr41043 4 19877658 to 19877669 11 - TSS region transcription start site region 41043
Tssr41044 4 19877746 to 19877757 11 - TSS region transcription start site region 41044
Tssr41045 4 19877771 to 19877795 24 - TSS region transcription start site region 41045
Tssr41046 4 19877807 to 19877822 15 - TSS region transcription start site region 41046
Tssr41047 4 19877875 to 19877886 11 - TSS region transcription start site region 41047
Tssr41048 4 19877894 to 19877903 9 - TSS region transcription start site region 41048
Tssr41049 4 19878016 to 19878027 11 - TSS region transcription start site region 41049
Tssr41050 4 19878155 to 19878169 14 - TSS region transcription start site region 41050
Tssr41051 4 19878300 to 19878307 7 - TSS region transcription start site region 41051
Tssr41052 4 19880031 to 19880045 14 - TSS region transcription start site region 41052
Tssr41053 4 19881330 to 19881345 15 - TSS region transcription start site region 41053
Tssr41054 4 19881363 to 19881384 21 - TSS region transcription start site region 41054
Tssr41055 4 19892342 to 19892352 10 - TSS region transcription start site region 41055
Tssr41056 4 19892357 to 19892375 18 - TSS region transcription start site region 41056
Tssr41057 4 19892382 to 19892411 29 - TSS region transcription start site region 41057
Tssr41058 4 19892563 to 19892572 9 - TSS region transcription start site region 41058
Tssr41059 4 19895757 to 19895780 23 - TSS region transcription start site region 41059
Tssr41060 4 19900507 to 19900515 8 - TSS region transcription start site region 41060
Tssr41061 4 19900923 to 19900934 11 - TSS region transcription start site region 41061
Tssr41062 4 19900957 to 19900978 21 - TSS region transcription start site region 41062
Tssr41063 4 19900989 to 19901000 11 - TSS region transcription start site region 41063
Tssr41064 4 19901179 to 19901190 11 - TSS region transcription start site region 41064
4833419A21Rik 4 19902927 to 19903929 1002 unclassified gene RIKEN cDNA 4833419A21 gene
Tssr41065 4 19908542 to 19908560 18 - TSS region transcription start site region 41065
Tssr41066 4 19908617 to 19908642 25 - TSS region transcription start site region 41066
Tssr41067 4 19920192 to 19920208 16 - TSS region transcription start site region 41067
Tssr41068 4 19920769 to 19920774 5 - TSS region transcription start site region 41068
Tssr41069 4 19922494 to 19922550 56 - TSS region transcription start site region 41069
Tssr41070 4 19922554 to 19922572 18 - TSS region transcription start site region 41070
Tssr41071 4 19922599 to 19922614 15 - TSS region transcription start site region 41071
Tssr41072 4 19923516 to 19923532 16 - TSS region transcription start site region 41072
4930480G23Rik 4 19979445 to 19985388 5943 - antisense lncRNA gene RIKEN cDNA 4930480G23 gene
Ttpa 4 20007938 to 20030785 22847 + protein coding gene tocopherol (alpha) transfer protein
Tssr36592 4 20007972 to 20008006 34 + TSS region transcription start site region 36592
Cpgi14065 4 20008015 to 20009043 1028 CpG island CpG island 14065
Tssr36593 4 20008393 to 20008451 58 + TSS region transcription start site region 36593
Tssr36594 4 20008461 to 20008472 11 + TSS region transcription start site region 36594
Tssr36595 4 20008494 to 20008501 7 + TSS region transcription start site region 36595
Tssr36596 4 20008508 to 20008517 9 + TSS region transcription start site region 36596
Tssr36597 4 20009367 to 20009406 39 + TSS region transcription start site region 36597
Tssr36598 4 20028712 to 20028720 8 + TSS region transcription start site region 36598
Tssr36599 4 20029354 to 20029390 36 + TSS region transcription start site region 36599
Tssr1126 4 20032263 to 20032292 29 + TSS region transcription start site region 1126
4930598A11Rik 4 20032846 to 20041564 8718 - lincRNA gene RIKEN cDNA 4930598A11 gene
Cpgi14066 4 20041601 to 20042493 892 CpG island CpG island 14066
Tssr36600 4 20041986 to 20041997 11 + TSS region transcription start site region 36600
Ggh 4 20041987 to 20066111 24124 + protein coding gene gamma-glutamyl hydrolase
Tssr36601 4 20042014 to 20042032 18 + TSS region transcription start site region 36601
Tssr36602 4 20042046 to 20042107 61 + TSS region transcription start site region 36602
Tssr36603 4 20042115 to 20042120 5 + TSS region transcription start site region 36603
Tssr36604 4 20042134 to 20042141 7 + TSS region transcription start site region 36604
Tssr36605 4 20042152 to 20042171 19 + TSS region transcription start site region 36605
Gm29814 4 20073320 to 20073790 470 + pseudogene predicted gene, 29814
Nkain3 4 20118874 to 20778866 659992 - protein coding gene Na+/K+ transporting ATPase interacting 3
Gm11872 4 20343706 to 20347818 4112 + antisense lncRNA gene predicted gene 11872
Gm11873 4 20391096 to 20392399 1303 + pseudogene predicted gene 11873
D4Mit268 4 20615439 to 20615586 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 268
D4Mit293 4 20730003 to 20730125 122 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 293
Cpgi14067 4 20777884 to 20778739 855 CpG island CpG island 14067
Tssr41073 4 20778527 to 20778593 66 - TSS region transcription start site region 41073
Tssr41074 4 20778696 to 20778707 11 - TSS region transcription start site region 41074
Tssr41075 4 20778709 to 20778730 21 - TSS region transcription start site region 41075
Tssr41076 4 20778852 to 20778876 24 - TSS region transcription start site region 41076
Tssr41077 4 20778885 to 20778907 22 - TSS region transcription start site region 41077
Tssr41078 4 20866887 to 20866892 5 - TSS region transcription start site region 41078
Gm11871 4 21009907 to 21010916 1009 - pseudogene predicted gene 11871
Gm22817 4 21270075 to 21270430 355 + ribozyme gene predicted gene, 22817
Gm25977 4 21328520 to 21328604 84 + snoRNA gene predicted gene, 25977
Gm11875 4 21626380 to 21627178 798 + pseudogene predicted gene 11875
Gm11876 4 21671040 to 21671308 268 + pseudogene predicted gene 11876
Cpgi14068 4 21674166 to 21674470 304 CpG island CpG island 14068
Prdm13 4 21677480 to 21685963 8483 - protein coding gene PR domain containing 13
Cpgi14069 4 21678028 to 21680107 2079 CpG island CpG island 14069
Cpgi14070 4 21685484 to 21685978 494 CpG island CpG island 14070
Tssr41079 4 21685782 to 21685805 23 - TSS region transcription start site region 41079
Cpgi14071 4 21688398 to 21689540 1142 CpG island CpG island 14071
Tssr41080 4 21722992 to 21723023 31 - TSS region transcription start site region 41080
Cpgi14072 4 21727412 to 21728077 665 CpG island CpG island 14072
Tssr36606 4 21727695 to 21727716 21 + TSS region transcription start site region 36606
Ccnc 4 21727701 to 21759922 32221 + protein coding gene cyclin C
Tssr36607 4 21727728 to 21727790 62 + TSS region transcription start site region 36607
D4Mit98 4 21736754 to 21736922 168 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 98
D4Mit345 4 21736800 to 21736922 122 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 345
D4Mit345.1 4 21736912 to 21737052 140 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 345.1
Tssr36608 4 21747711 to 21747734 23 + TSS region transcription start site region 36608
Tssr36609 4 21749703 to 21749707 4 + TSS region transcription start site region 36609
Tstd3 4 21757382 to 21767211 9829 - protein coding gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 3
Cpgi14073 4 21766855 to 21767200 345 CpG island CpG island 14073
Tssr41081 4 21767115 to 21767142 27 - TSS region transcription start site region 41081
Tssr41082 4 21767144 to 21767164 20 - TSS region transcription start site region 41082
Tssr36610 4 21767155 to 21767201 46 + TSS region transcription start site region 36610
Usp45 4 21767161 to 21837872 70711 + protein coding gene ubiquitin specific petidase 45
Tssr41083 4 21767173 to 21767217 44 - TSS region transcription start site region 41083
Tssr41084 4 21772409 to 21772417 8 - TSS region transcription start site region 41084
Cpgi14074 4 21776087 to 21776705 618 CpG island CpG island 14074
Tssr36611 4 21776261 to 21776297 36 + TSS region transcription start site region 36611
4930528A17Rik 4 21846327 to 21848448 2121 - lncRNA gene RIKEN cDNA 4930528A17 gene
Pnisr 4 21847583 to 21876475 28892 + protein coding gene PNN interacting serine/arginine-rich
Cpgi14075 4 21847599 to 21848652 1053 CpG island CpG island 14075
Tssr36612 4 21848039 to 21848077 38 + TSS region transcription start site region 36612
Tssr41085 4 21848364 to 21848374 10 - TSS region transcription start site region 41085
Tssr41086 4 21848416 to 21848455 39 - TSS region transcription start site region 41086
Tssr36613 4 21862140 to 21862151 11 + TSS region transcription start site region 36613
Tssr36614 4 21865887 to 21865900 13 + TSS region transcription start site region 36614
Tssr36615 4 21869694 to 21869699 5 + TSS region transcription start site region 36615
Tssr36616 4 21871032 to 21871036 4 + TSS region transcription start site region 36616
Tssr36617 4 21873776 to 21873786 10 + TSS region transcription start site region 36617
Tssr36618 4 21874016 to 21874031 15 + TSS region transcription start site region 36618
Tssr36619 4 21874035 to 21874048 13 + TSS region transcription start site region 36619
Tssr36620 4 21874101 to 21874121 20 + TSS region transcription start site region 36620
Tssr36621 4 21874422 to 21874442 20 + TSS region transcription start site region 36621
Tssr36622 4 21874530 to 21874541 11 + TSS region transcription start site region 36622
Cpgi14076 4 21879429 to 21880344 915 CpG island CpG island 14076
Tssr36623 4 21879662 to 21879702 40 + TSS region transcription start site region 36623
Coq3 4 21879675 to 21912163 32488 + protein coding gene coenzyme Q3 methyltransferase
Tssr41087 4 21890654 to 21890660 6 - TSS region transcription start site region 41087
Cpgi14077 4 21930874 to 21931982 1108 CpG island CpG island 14077
Tssr36624 4 21931100 to 21931164 64 + TSS region transcription start site region 36624
Tssr36625 4 21931291 to 21931366 75 + TSS region transcription start site region 36625
Faxc 4 21931329 to 21996839 65510 + protein coding gene failed axon connections homolog
Tssr36626 4 21931500 to 21931511 11 + TSS region transcription start site region 36626
Tssr36627 4 21931683 to 21931728 45 + TSS region transcription start site region 36627
Tssr36628 4 21964707 to 21964709 2 + TSS region transcription start site region 36628
Gm11885 4 22006879 to 22008183 1304 - pseudogene predicted gene 11885
Gm42260 4 22024034 to 22040372 16338 + lncRNA gene predicted gene, 42260
Tssr36629 4 22035612 to 22035615 3 + TSS region transcription start site region 36629
Gm11880 4 22117134 to 22117532 398 - pseudogene predicted gene 11880
Gm42261 4 22248631 to 22357437 108806 - lncRNA gene predicted gene, 42261