Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:19317326-20437345

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cngb3 4 19280850 to 19510623 229773 + protein coding gene cyclic nucleotide gated channel beta 3
D4Dcr5 4 19442025 to 19442127 102 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 5
Tssr36576 4 19491947 to 19491959 12 + TSS region transcription start site region 36576
Gm25655 4 19514490 to 19514779 289 - unclassified non-coding RNA gene predicted gene, 25655
Cpne3 4 19519254 to 19570108 50854 - protein coding gene copine III
Tssr40997 4 19520239 to 19520252 13 - TSS region transcription start site region 40997
Tssr40998 4 19521562 to 19521597 35 - TSS region transcription start site region 40998
Tssr40999 4 19526586 to 19526588 2 - TSS region transcription start site region 40999
Tssr41000 4 19553637 to 19553642 5 - TSS region transcription start site region 41000
Cpgi14062 4 19569294 to 19570227 933 CpG island CpG island 14062
Tssr41001 4 19570046 to 19570068 22 - TSS region transcription start site region 41001
Tssr41002 4 19570073 to 19570117 44 - TSS region transcription start site region 41002
Cpgi14063 4 19574923 to 19575607 684 CpG island CpG island 14063
Tssr36577 4 19575050 to 19575092 42 + TSS region transcription start site region 36577
Tssr36578 4 19575129 to 19575138 9 + TSS region transcription start site region 36578
Tssr36579 4 19575139 to 19575216 77 + TSS region transcription start site region 36579
Rmdn1 4 19575162 to 19606932 31770 + protein coding gene regulator of microtubule dynamics 1
Tssr36580 4 19575494 to 19575505 11 + TSS region transcription start site region 36580
Tssr36581 4 19575533 to 19575562 29 + TSS region transcription start site region 36581
Tssr36582 4 19575563 to 19575590 27 + TSS region transcription start site region 36582
Tssr36583 4 19575596 to 19575612 16 + TSS region transcription start site region 36583
Tssr36584 4 19584749 to 19584752 3 + TSS region transcription start site region 36584
Gm12353 4 19605451 to 19651130 45679 + protein coding gene predicted gene 12353
Wwp1 4 19608303 to 19708993 100690 - protein coding gene WW domain containing E3 ubiquitin protein ligase 1
Tssr41003 4 19608776 to 19608807 31 - TSS region transcription start site region 41003
Tssr41004 4 19611041 to 19611059 18 - TSS region transcription start site region 41004
Gm42259 4 19612906 to 19618278 5372 - lncRNA gene predicted gene, 42259
Tssr41005 4 19629999 to 19630032 33 - TSS region transcription start site region 41005
Tssr41006 4 19631987 to 19631994 7 - TSS region transcription start site region 41006
Tssr41007 4 19635306 to 19635343 37 - TSS region transcription start site region 41007
Tssr41008 4 19637201 to 19637211 10 - TSS region transcription start site region 41008
Tssr41009 4 19650163 to 19650184 21 - TSS region transcription start site region 41009
Tssr36585 4 19650300 to 19650323 23 + TSS region transcription start site region 36585
Tssr41010 4 19650379 to 19650401 22 - TSS region transcription start site region 41010
Tssr41011 4 19650424 to 19650445 21 - TSS region transcription start site region 41011
Tssr41012 4 19651997 to 19652001 4 - TSS region transcription start site region 41012
Tssr41013 4 19656197 to 19656207 10 - TSS region transcription start site region 41013
Tssr41014 4 19656213 to 19656226 13 - TSS region transcription start site region 41014
D4Dcr6 4 19656345 to 19656451 106 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 6
Tssr41015 4 19659609 to 19659635 26 - TSS region transcription start site region 41015
Tssr41016 4 19659648 to 19659662 14 - TSS region transcription start site region 41016
Tssr41017 4 19678846 to 19678850 4 - TSS region transcription start site region 41017
Tssr41018 4 19680352 to 19680383 31 - TSS region transcription start site region 41018
Tssr41019 4 19687874 to 19687890 16 - TSS region transcription start site region 41019
Tssr41020 4 19693879 to 19693891 12 - TSS region transcription start site region 41020
Tssr41021 4 19695279 to 19695285 6 - TSS region transcription start site region 41021
Tssr41022 4 19696697 to 19696747 50 - TSS region transcription start site region 41022
Tssr41023 4 19705159 to 19705163 4 - TSS region transcription start site region 41023
Cpgi14064 4 19708507 to 19709429 922 CpG island CpG island 14064
Tssr41024 4 19708539 to 19708542 3 - TSS region transcription start site region 41024
Tssr36586 4 19708583 to 19708599 16 + TSS region transcription start site region 36586
Tssr41025 4 19708922 to 19709004 82 - TSS region transcription start site region 41025
Tssr41026 4 19709019 to 19709030 11 - TSS region transcription start site region 41026
Tssr41027 4 19709102 to 19709120 18 - TSS region transcription start site region 41027
Tssr41028 4 19709137 to 19709163 26 - TSS region transcription start site region 41028
Tssr1125 4 19709173 to 19709180 7 - TSS region transcription start site region 1125
Tssr36587 4 19709321 to 19709341 20 + TSS region transcription start site region 36587
Gm12354 4 19716732 to 19720199 3467 - lincRNA gene predicted gene 12354
Tssr36588 4 19737363 to 19737382 19 + TSS region transcription start site region 36588
Tssr36589 4 19818722 to 19818743 21 + TSS region transcription start site region 36589
Slc7a13 4 19818727 to 19842213 23486 + protein coding gene solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
Tssr41029 4 19837945 to 19837951 6 - TSS region transcription start site region 41029
Tssr36590 4 19852130 to 19852133 3 + TSS region transcription start site region 36590
D4Mit135 4 19860602 to 19860747 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 135
Tssr36591 4 19872221 to 19872232 11 + TSS region transcription start site region 36591
Atp6v0d2 4 19876838 to 19922566 45728 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit D2
Tssr41030 4 19877129 to 19877142 13 - TSS region transcription start site region 41030
Tssr41031 4 19877194 to 19877204 10 - TSS region transcription start site region 41031
Tssr41032 4 19877211 to 19877221 10 - TSS region transcription start site region 41032
Tssr41033 4 19877250 to 19877287 37 - TSS region transcription start site region 41033
Tssr41034 4 19877291 to 19877319 28 - TSS region transcription start site region 41034
Tssr41035 4 19877326 to 19877345 19 - TSS region transcription start site region 41035
Tssr41036 4 19877353 to 19877395 42 - TSS region transcription start site region 41036
Tssr41037 4 19877475 to 19877483 8 - TSS region transcription start site region 41037
Tssr41038 4 19877541 to 19877552 11 - TSS region transcription start site region 41038
Tssr41039 4 19877553 to 19877580 27 - TSS region transcription start site region 41039
Tssr41040 4 19877595 to 19877613 18 - TSS region transcription start site region 41040
Tssr41041 4 19877622 to 19877627 5 - TSS region transcription start site region 41041
Tssr41042 4 19877629 to 19877643 14 - TSS region transcription start site region 41042
Tssr41043 4 19877658 to 19877669 11 - TSS region transcription start site region 41043
Tssr41044 4 19877746 to 19877757 11 - TSS region transcription start site region 41044
Tssr41045 4 19877771 to 19877795 24 - TSS region transcription start site region 41045
Tssr41046 4 19877807 to 19877822 15 - TSS region transcription start site region 41046
Tssr41047 4 19877875 to 19877886 11 - TSS region transcription start site region 41047
Tssr41048 4 19877894 to 19877903 9 - TSS region transcription start site region 41048
Tssr41049 4 19878016 to 19878027 11 - TSS region transcription start site region 41049
Tssr41050 4 19878155 to 19878169 14 - TSS region transcription start site region 41050
Tssr41051 4 19878300 to 19878307 7 - TSS region transcription start site region 41051
Tssr41052 4 19880031 to 19880045 14 - TSS region transcription start site region 41052
Tssr41053 4 19881330 to 19881345 15 - TSS region transcription start site region 41053
Tssr41054 4 19881363 to 19881384 21 - TSS region transcription start site region 41054
Tssr41055 4 19892342 to 19892352 10 - TSS region transcription start site region 41055
Tssr41056 4 19892357 to 19892375 18 - TSS region transcription start site region 41056
Tssr41057 4 19892382 to 19892411 29 - TSS region transcription start site region 41057
Tssr41058 4 19892563 to 19892572 9 - TSS region transcription start site region 41058
Tssr41059 4 19895757 to 19895780 23 - TSS region transcription start site region 41059
Tssr41060 4 19900507 to 19900515 8 - TSS region transcription start site region 41060
Tssr41061 4 19900923 to 19900934 11 - TSS region transcription start site region 41061
Tssr41062 4 19900957 to 19900978 21 - TSS region transcription start site region 41062
Tssr41063 4 19900989 to 19901000 11 - TSS region transcription start site region 41063
Tssr41064 4 19901179 to 19901190 11 - TSS region transcription start site region 41064
4833419A21Rik 4 19902927 to 19903929 1002 unclassified gene RIKEN cDNA 4833419A21 gene
Tssr41065 4 19908542 to 19908560 18 - TSS region transcription start site region 41065
Tssr41066 4 19908617 to 19908642 25 - TSS region transcription start site region 41066
Tssr41067 4 19920192 to 19920208 16 - TSS region transcription start site region 41067
Tssr41068 4 19920769 to 19920774 5 - TSS region transcription start site region 41068
Tssr41069 4 19922494 to 19922550 56 - TSS region transcription start site region 41069
Tssr41070 4 19922554 to 19922572 18 - TSS region transcription start site region 41070
Tssr41071 4 19922599 to 19922614 15 - TSS region transcription start site region 41071
Tssr41072 4 19923516 to 19923532 16 - TSS region transcription start site region 41072
4930480G23Rik 4 19979445 to 19985388 5943 - antisense lncRNA gene RIKEN cDNA 4930480G23 gene
Ttpa 4 20007938 to 20030785 22847 + protein coding gene tocopherol (alpha) transfer protein
Tssr36592 4 20007972 to 20008006 34 + TSS region transcription start site region 36592
Cpgi14065 4 20008015 to 20009043 1028 CpG island CpG island 14065
Tssr36593 4 20008393 to 20008451 58 + TSS region transcription start site region 36593
Tssr36594 4 20008461 to 20008472 11 + TSS region transcription start site region 36594
Tssr36595 4 20008494 to 20008501 7 + TSS region transcription start site region 36595
Tssr36596 4 20008508 to 20008517 9 + TSS region transcription start site region 36596
Tssr36597 4 20009367 to 20009406 39 + TSS region transcription start site region 36597
Tssr36598 4 20028712 to 20028720 8 + TSS region transcription start site region 36598
Tssr36599 4 20029354 to 20029390 36 + TSS region transcription start site region 36599
Tssr1126 4 20032263 to 20032292 29 + TSS region transcription start site region 1126
4930598A11Rik 4 20032846 to 20041564 8718 - lincRNA gene RIKEN cDNA 4930598A11 gene
Cpgi14066 4 20041601 to 20042493 892 CpG island CpG island 14066
Tssr36600 4 20041986 to 20041997 11 + TSS region transcription start site region 36600
Ggh 4 20041987 to 20066111 24124 + protein coding gene gamma-glutamyl hydrolase
Tssr36601 4 20042014 to 20042032 18 + TSS region transcription start site region 36601
Tssr36602 4 20042046 to 20042107 61 + TSS region transcription start site region 36602
Tssr36603 4 20042115 to 20042120 5 + TSS region transcription start site region 36603
Tssr36604 4 20042134 to 20042141 7 + TSS region transcription start site region 36604
Tssr36605 4 20042152 to 20042171 19 + TSS region transcription start site region 36605
Gm29814 4 20073320 to 20073790 470 + pseudogene predicted gene, 29814
Nkain3 4 20118874 to 20778866 659992 - protein coding gene Na+/K+ transporting ATPase interacting 3
Gm11872 4 20343706 to 20347818 4112 + antisense lncRNA gene predicted gene 11872
Gm11873 4 20391096 to 20392399 1303 + pseudogene predicted gene 11873