Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:18925850-19865623

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12392 4 18964564 to 18965501 937 + pseudogene predicted gene 12392
D4Dcr33 4 18966474 to 18966574 100 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 33
D4Mit260 4 19019535 to 19019674 139 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 260
Tssr40994 4 19122511 to 19122524 13 - TSS region transcription start site region 40994
Tssr40995 4 19122528 to 19122531 3 - TSS region transcription start site region 40995
Tssr40996 4 19122536 to 19122555 19 - TSS region transcription start site region 40996
Tssr1124 4 19122633 to 19122642 9 + TSS region transcription start site region 1124
Gm42258 4 19122636 to 19137732 15096 + lncRNA gene predicted gene, 42258
Tssr36571 4 19122653 to 19122681 28 + TSS region transcription start site region 36571
D4Dcr4 4 19224661 to 19224761 100 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 4
Gm12393 4 19259096 to 19259943 847 + pseudogene predicted gene 12393
Cngb3 4 19280850 to 19510623 229773 + protein coding gene cyclic nucleotide gated channel beta 3
Tssr36572 4 19280862 to 19280907 45 + TSS region transcription start site region 36572
Tssr36573 4 19280910 to 19280919 9 + TSS region transcription start site region 36573
Tssr36574 4 19280920 to 19280931 11 + TSS region transcription start site region 36574
Tssr36575 4 19298257 to 19298258 1 + TSS region transcription start site region 36575
Gm11877 4 19298333 to 19299184 851 + pseudogene predicted gene 11877
D4Dcr5 4 19442025 to 19442127 102 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 5
Tssr36576 4 19491947 to 19491959 12 + TSS region transcription start site region 36576
Gm25655 4 19514490 to 19514779 289 - unclassified non-coding RNA gene predicted gene, 25655
Cpne3 4 19519254 to 19570108 50854 - protein coding gene copine III
Tssr40997 4 19520239 to 19520252 13 - TSS region transcription start site region 40997
Tssr40998 4 19521562 to 19521597 35 - TSS region transcription start site region 40998
Tssr40999 4 19526586 to 19526588 2 - TSS region transcription start site region 40999
Tssr41000 4 19553637 to 19553642 5 - TSS region transcription start site region 41000
Cpgi14062 4 19569294 to 19570227 933 CpG island CpG island 14062
Tssr41001 4 19570046 to 19570068 22 - TSS region transcription start site region 41001
Tssr41002 4 19570073 to 19570117 44 - TSS region transcription start site region 41002
Cpgi14063 4 19574923 to 19575607 684 CpG island CpG island 14063
Tssr36577 4 19575050 to 19575092 42 + TSS region transcription start site region 36577
Tssr36578 4 19575129 to 19575138 9 + TSS region transcription start site region 36578
Tssr36579 4 19575139 to 19575216 77 + TSS region transcription start site region 36579
Rmdn1 4 19575162 to 19606932 31770 + protein coding gene regulator of microtubule dynamics 1
Tssr36580 4 19575494 to 19575505 11 + TSS region transcription start site region 36580
Tssr36581 4 19575533 to 19575562 29 + TSS region transcription start site region 36581
Tssr36582 4 19575563 to 19575590 27 + TSS region transcription start site region 36582
Tssr36583 4 19575596 to 19575612 16 + TSS region transcription start site region 36583
Tssr36584 4 19584749 to 19584752 3 + TSS region transcription start site region 36584
Gm12353 4 19605451 to 19651130 45679 + protein coding gene predicted gene 12353
Wwp1 4 19608303 to 19708993 100690 - protein coding gene WW domain containing E3 ubiquitin protein ligase 1
Tssr41003 4 19608776 to 19608807 31 - TSS region transcription start site region 41003
Tssr41004 4 19611041 to 19611059 18 - TSS region transcription start site region 41004
Gm42259 4 19612906 to 19618278 5372 - lncRNA gene predicted gene, 42259
Tssr41005 4 19629999 to 19630032 33 - TSS region transcription start site region 41005
Tssr41006 4 19631987 to 19631994 7 - TSS region transcription start site region 41006
Tssr41007 4 19635306 to 19635343 37 - TSS region transcription start site region 41007
Tssr41008 4 19637201 to 19637211 10 - TSS region transcription start site region 41008
Tssr41009 4 19650163 to 19650184 21 - TSS region transcription start site region 41009
Tssr36585 4 19650300 to 19650323 23 + TSS region transcription start site region 36585
Tssr41010 4 19650379 to 19650401 22 - TSS region transcription start site region 41010
Tssr41011 4 19650424 to 19650445 21 - TSS region transcription start site region 41011
Tssr41012 4 19651997 to 19652001 4 - TSS region transcription start site region 41012
Tssr41013 4 19656197 to 19656207 10 - TSS region transcription start site region 41013
Tssr41014 4 19656213 to 19656226 13 - TSS region transcription start site region 41014
D4Dcr6 4 19656345 to 19656451 106 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 6
Tssr41015 4 19659609 to 19659635 26 - TSS region transcription start site region 41015
Tssr41016 4 19659648 to 19659662 14 - TSS region transcription start site region 41016
Tssr41017 4 19678846 to 19678850 4 - TSS region transcription start site region 41017
Tssr41018 4 19680352 to 19680383 31 - TSS region transcription start site region 41018
Tssr41019 4 19687874 to 19687890 16 - TSS region transcription start site region 41019
Tssr41020 4 19693879 to 19693891 12 - TSS region transcription start site region 41020
Tssr41021 4 19695279 to 19695285 6 - TSS region transcription start site region 41021
Tssr41022 4 19696697 to 19696747 50 - TSS region transcription start site region 41022
Tssr41023 4 19705159 to 19705163 4 - TSS region transcription start site region 41023
Cpgi14064 4 19708507 to 19709429 922 CpG island CpG island 14064
Tssr41024 4 19708539 to 19708542 3 - TSS region transcription start site region 41024
Tssr36586 4 19708583 to 19708599 16 + TSS region transcription start site region 36586
Tssr41025 4 19708922 to 19709004 82 - TSS region transcription start site region 41025
Tssr41026 4 19709019 to 19709030 11 - TSS region transcription start site region 41026
Tssr41027 4 19709102 to 19709120 18 - TSS region transcription start site region 41027
Tssr41028 4 19709137 to 19709163 26 - TSS region transcription start site region 41028
Tssr1125 4 19709173 to 19709180 7 - TSS region transcription start site region 1125
Tssr36587 4 19709321 to 19709341 20 + TSS region transcription start site region 36587
Gm12354 4 19716732 to 19720199 3467 - lincRNA gene predicted gene 12354
Tssr36588 4 19737363 to 19737382 19 + TSS region transcription start site region 36588
Tssr36589 4 19818722 to 19818743 21 + TSS region transcription start site region 36589
Slc7a13 4 19818727 to 19842213 23486 + protein coding gene solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
Tssr41029 4 19837945 to 19837951 6 - TSS region transcription start site region 41029
Tssr36590 4 19852130 to 19852133 3 + TSS region transcription start site region 36590
D4Mit135 4 19860602 to 19860747 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 135