Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:17807189-19139298

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmp16 4 17852893 to 18119145 266252 + protein coding gene matrix metallopeptidase 16
Cpgi14061 4 17852901 to 17853806 905 CpG island CpG island 14061
Tssr36563 4 17853246 to 17853282 36 + TSS region transcription start site region 36563
Tssr36564 4 17853284 to 17853325 41 + TSS region transcription start site region 36564
Tssr36565 4 17853343 to 17853356 13 + TSS region transcription start site region 36565
Tssr36566 4 17853451 to 17853474 23 + TSS region transcription start site region 36566
Tssr36567 4 17853634 to 17853648 14 + TSS region transcription start site region 36567
Tssr36568 4 17872092 to 17872098 6 + TSS region transcription start site region 36568
W6q15 4 17892616 to 89063979 71171363 QTL weight 6 weeks QTL 15
Kidq4 4 17892616 to 89063979 71171363 QTL kidney weight QTL 4
D4Mit1 4 17892616 to 17892734 118 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1
Lvrq9 4 17892616 to 89063979 71171363 QTL liver weight QTL 9
Tssr36569 4 17945953 to 17945956 3 + TSS region transcription start site region 36569
Gm11860 4 18009236 to 18010245 1009 - pseudogene predicted gene 11860
Tssr36570 4 18193520 to 18193522 2 + TSS region transcription start site region 36570
Gm11852 4 18193531 to 18193752 221 + pseudogene predicted gene 11852
D4Dcr31 4 18404161 to 18404256 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 31
Gm11867 4 18407349 to 18891842 484493 + unclassified non-coding RNA gene predicted gene 11867
D4Dcr1 4 18458754 to 18458854 100 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 1
Gm11854 4 18471669 to 18472114 445 - pseudogene predicted gene 11854
Gm11853 4 18472189 to 18474298 2109 + pseudogene predicted gene 11853
D4Dcr32 4 18484283 to 18484383 100 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 32
Gm25971 4 18708748 to 18709033 285 + unclassified non-coding RNA gene predicted gene, 25971
D4Dcr2 4 18729450 to 18729547 97 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 2
Gm24419 4 18730217 to 18730548 331 - unclassified non-coding RNA gene predicted gene, 24419
Cnbd1 4 18767985 to 18862139 94154 - protein coding gene cyclic nucleotide binding domain containing 1
D4Dcr3 4 18824912 to 18825007 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 3
Gm11868 4 18844205 to 18845679 1474 - pseudogene predicted gene 11868
Gm12392 4 18964564 to 18965501 937 + pseudogene predicted gene 12392
D4Dcr33 4 18966474 to 18966574 100 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 33
D4Mit260 4 19019535 to 19019674 139 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 260
Tssr40994 4 19122511 to 19122524 13 - TSS region transcription start site region 40994
Tssr40995 4 19122528 to 19122531 3 - TSS region transcription start site region 40995
Tssr40996 4 19122536 to 19122555 19 - TSS region transcription start site region 40996
Tssr1124 4 19122633 to 19122642 9 + TSS region transcription start site region 1124
Gm42258 4 19122636 to 19137732 15096 + lncRNA gene predicted gene, 42258
Tssr36571 4 19122653 to 19122681 28 + TSS region transcription start site region 36571