Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:15990574-18101052

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nbn 4 15957925 to 15992589 34664 + protein coding gene nibrin
Osgin2 4 15997121 to 16013888 16767 - protein coding gene oxidative stress induced growth inhibitor family member 2
Tssr40980 4 16001472 to 16001475 3 - TSS region transcription start site region 40980
Gm11870 4 16011005 to 16012326 1321 - pseudogene predicted gene 11870
Cpgi14059 4 16013394 to 16014402 1008 CpG island CpG island 14059
Tssr40981 4 16013766 to 16013775 9 - TSS region transcription start site region 40981
Tssr40982 4 16013783 to 16013802 19 - TSS region transcription start site region 40982
Tssr40983 4 16013804 to 16013808 4 - TSS region transcription start site region 40983
Tssr40984 4 16013811 to 16013830 19 - TSS region transcription start site region 40984
Tssr40985 4 16013835 to 16013856 21 - TSS region transcription start site region 40985
Tssr40986 4 16013868 to 16013884 16 - TSS region transcription start site region 40986
Tssr40987 4 16013887 to 16013890 3 - TSS region transcription start site region 40987
Gm11874 4 16120759 to 16120888 129 - pseudogene predicted gene 11874
Ripk2 4 16122733 to 16163647 40914 - protein coding gene receptor (TNFRSF)-interacting serine-threonine kinase 2
Gm22690 4 16129566 to 16129675 109 - miRNA gene predicted gene, 22690
Tssr40988 4 16145741 to 16145753 12 - TSS region transcription start site region 40988
Tssr40989 4 16147152 to 16147167 15 - TSS region transcription start site region 40989
Cpgi14060 4 16162894 to 16164116 1222 CpG island CpG island 14060
Tssr40990 4 16163492 to 16163505 13 - TSS region transcription start site region 40990
Tssr40991 4 16163512 to 16163533 21 - TSS region transcription start site region 40991
Tssr40992 4 16163611 to 16163625 14 - TSS region transcription start site region 40992
Tssr36562 4 16164086 to 16164118 32 + TSS region transcription start site region 36562
A530072M11Rik 4 16164110 to 16266225 102115 + lncRNA gene RIKEN cDNA gene A530072M11
Gm11865 4 16246269 to 16249514 3245 + pseudogene predicted gene 11865
Gm37355 4 16384052 to 16384657 605 + unclassified gene predicted gene, 37355
Gm11864 4 16390462 to 16391664 1202 - pseudogene predicted gene 11864
Gm11861 4 16464876 to 16509323 44447 + lincRNA gene predicted gene 11861
Gm24978 4 16675923 to 16676029 106 + snRNA gene predicted gene, 24978
Gm11862 4 16714944 to 16715602 658 + pseudogene predicted gene 11862
Gm23975 4 16861689 to 16861794 105 - snRNA gene predicted gene, 23975
Gm11848 4 17032691 to 17033656 965 - pseudogene predicted gene 11848
Gm11850 4 17045574 to 17046052 478 - pseudogene predicted gene 11850
Gm11849 4 17256101 to 17256361 260 - pseudogene predicted gene 11849
Gm42257 4 17487627 to 17514003 26376 - lncRNA gene predicted gene, 42257
Gm30092 4 17546456 to 17636247 89791 - lncRNA gene predicted gene, 30092
Gm23384 4 17559917 to 17560019 102 - snRNA gene predicted gene, 23384
Tssr40993 4 17636186 to 17636192 6 - TSS region transcription start site region 40993
Gm11851 4 17656675 to 17657963 1288 - lincRNA gene predicted gene 11851
Mmp16 4 17852893 to 18119145 266252 + protein coding gene matrix metallopeptidase 16
Cpgi14061 4 17852901 to 17853806 905 CpG island CpG island 14061
Tssr36563 4 17853246 to 17853282 36 + TSS region transcription start site region 36563
Tssr36564 4 17853284 to 17853325 41 + TSS region transcription start site region 36564
Tssr36565 4 17853343 to 17853356 13 + TSS region transcription start site region 36565
Tssr36566 4 17853451 to 17853474 23 + TSS region transcription start site region 36566
Tssr36567 4 17853634 to 17853648 14 + TSS region transcription start site region 36567
Tssr36568 4 17872092 to 17872098 6 + TSS region transcription start site region 36568
W6q15 4 17892616 to 89063979 71171363 QTL weight 6 weeks QTL 15
Kidq4 4 17892616 to 89063979 71171363 QTL kidney weight QTL 4
Lvrq9 4 17892616 to 89063979 71171363 QTL liver weight QTL 9
D4Mit1 4 17892616 to 17892734 118 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1
Tssr36569 4 17945953 to 17945956 3 + TSS region transcription start site region 36569
Gm11860 4 18009236 to 18010245 1009 - pseudogene predicted gene 11860