Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:156015512-156245517

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnfrsf4 4 156013843 to 156016612 2769 + protein coding gene tumor necrosis factor receptor superfamily, member 4
Tssr44991 4 156015925 to 156015950 25 - TSS region transcription start site region 44991
Tssr44992 4 156016596 to 156016611 15 - TSS region transcription start site region 44992
Tssr40776 4 156016799 to 156016804 5 + TSS region transcription start site region 40776
Gm37090 4 156018556 to 156022660 4104 - unclassified gene predicted gene, 37090
Gm10560 4 156021645 to 156023824 2179 - lncRNA gene predicted gene 10560
Gm16008 4 156022008 to 156031643 9635 - antisense lncRNA gene predicted gene 16008
Tssr44993 4 156022275 to 156022286 11 - TSS region transcription start site region 44993
Tssr40777 4 156022546 to 156022550 4 + TSS region transcription start site region 40777
Gm25982 4 156023058 to 156023158 100 - snRNA gene predicted gene, 25982
Tssr40778 4 156026120 to 156026132 12 + TSS region transcription start site region 40778
Tnfrsf18 4 156026164 to 156028895 2731 + protein coding gene tumor necrosis factor receptor superfamily, member 18
Tssr44994 4 156026206 to 156026225 19 - TSS region transcription start site region 44994
Tssr40779 4 156026304 to 156026371 67 + TSS region transcription start site region 40779
Tssr40780 4 156026375 to 156026387 12 + TSS region transcription start site region 40780
Tssr40781 4 156027170 to 156027175 5 + TSS region transcription start site region 40781
Tssr40782 4 156027468 to 156027478 10 + TSS region transcription start site region 40782
Tssr40783 4 156027482 to 156027496 14 + TSS region transcription start site region 40783
Tssr40784 4 156027526 to 156027535 9 + TSS region transcription start site region 40784
Tssr40785 4 156028945 to 156028956 11 + TSS region transcription start site region 40785
Tssr40786 4 156029752 to 156029763 11 + TSS region transcription start site region 40786
Tssr44995 4 156030692 to 156030701 9 - TSS region transcription start site region 44995
Tssr44996 4 156030748 to 156030764 16 - TSS region transcription start site region 44996
Tssr40787 4 156030961 to 156030974 13 + TSS region transcription start site region 40787
Cpgi15497 4 156031604 to 156032159 555 CpG island CpG island 15497
Tssr44997 4 156031618 to 156031635 17 - TSS region transcription start site region 44997
Tssr44998 4 156031655 to 156031674 19 - TSS region transcription start site region 44998
Cpgi15498 4 156034707 to 156035502 795 CpG island CpG island 15498
Ttll10 4 156034840 to 156059414 24574 - protein coding gene tubulin tyrosine ligase-like family, member 10
Tssr44999 4 156047932 to 156047972 40 - TSS region transcription start site region 44999
Tssr45000 4 156050465 to 156050473 8 - TSS region transcription start site region 45000
Tssr45001 4 156050498 to 156050506 8 - TSS region transcription start site region 45001
Tssr45002 4 156050733 to 156050761 28 - TSS region transcription start site region 45002
Tssr45003 4 156050762 to 156050772 10 - TSS region transcription start site region 45003
Tssr45004 4 156050785 to 156050796 11 - TSS region transcription start site region 45004
Gm13648 4 156052715 to 156059802 7087 - lncRNA gene predicted gene 13648
Mirc4 4 156053905 to 156055750 1845 complex/cluster/region microRNA cluster 4, including Mir429 through Mir200b
Mir429 4 156053905 to 156053987 82 - miRNA gene microRNA 429
Tssr45005 4 156053913 to 156053915 2 - TSS region transcription start site region 45005
Mir200a 4 156054896 to 156054985 89 - miRNA gene microRNA 200a
Mir200b 4 156055681 to 156055750 69 - miRNA gene microRNA 200b
Tssr45006 4 156059429 to 156059435 6 - TSS region transcription start site region 45006
Tssr45007 4 156059807 to 156059830 23 - TSS region transcription start site region 45007
Tssr40788 4 156060058 to 156060068 10 + TSS region transcription start site region 40788
Tssr40789 4 156064339 to 156064351 12 + TSS region transcription start site region 40789
Cpgi15499 4 156077525 to 156078428 903 CpG island CpG island 15499
Tssr45008 4 156084303 to 156084329 26 - TSS region transcription start site region 45008
Cpgi15500 4 156109629 to 156110501 872 CpG island CpG island 15500
Tssr40790 4 156109971 to 156110004 33 + TSS region transcription start site region 40790
9430015G10Rik 4 156109998 to 156127265 17267 + protein coding gene RIKEN cDNA 9430015G10 gene
Tssr40791 4 156110013 to 156110053 40 + TSS region transcription start site region 40791
Tssr40792 4 156130512 to 156130517 5 + TSS region transcription start site region 40792
Rnf223 4 156130513 to 156133420 2907 + protein coding gene ring finger 223
D4Dcr37 4 156146710 to 156146805 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 37
Agrn 4 156165290 to 156197488 32198 - protein coding gene agrin
Elorr3 4 156183778 to 3722677 -152461101 QTL ethanol induced loss of righting response 3
Cpgi15501 4 156186063 to 156186359 296 CpG island CpG island 15501
Tssr45009 4 156186072 to 156186091 19 - TSS region transcription start site region 45009
Tssr45010 4 156186093 to 156186145 52 - TSS region transcription start site region 45010
Gm46878 4 156186166 to 156200199 14033 + lncRNA gene predicted gene, 46878
Tssr40793 4 156186179 to 156186188 9 + TSS region transcription start site region 40793
Tssr45011 4 156186215 to 156186279 64 - TSS region transcription start site region 45011
Tssr1405 4 156192551 to 156192575 24 - TSS region transcription start site region 1405
Tssr45012 4 156192576 to 156192617 41 - TSS region transcription start site region 45012
Cpgi15502 4 156196349 to 156198261 1912 CpG island CpG island 15502
Tssr45013 4 156197479 to 156197496 17 - TSS region transcription start site region 45013
Tssr45014 4 156197513 to 156197520 7 - TSS region transcription start site region 45014
Isg15 4 156199424 to 156200818 1394 - protein coding gene ISG15 ubiquitin-like modifier
Tssr40794 4 156199518 to 156199541 23 + TSS region transcription start site region 40794
Tssr45015 4 156199590 to 156199603 13 - TSS region transcription start site region 45015
Tssr45016 4 156199654 to 156199666 12 - TSS region transcription start site region 45016
Tssr45017 4 156199720 to 156199736 16 - TSS region transcription start site region 45017
Tssr45018 4 156200034 to 156200037 3 - TSS region transcription start site region 45018
Tssr45019 4 156200791 to 156200805 14 - TSS region transcription start site region 45019
Tssr45020 4 156200824 to 156200833 9 - TSS region transcription start site region 45020
Tssr45021 4 156200837 to 156200846 9 - TSS region transcription start site region 45021
Cpgi15503 4 156202783 to 156204279 1496 CpG island CpG island 15503
Tssr40795 4 156203292 to 156203310 18 + TSS region transcription start site region 40795
AW011738 4 156203304 to 156205151 1847 + unclassified gene expressed sequence AW011738
Gm46877 4 156212969 to 156215050 2081 + pseudogene predicted gene, 46877
Cpgi15504 4 156214276 to 156214556 280 CpG island CpG island 15504
Perm1 4 156215868 to 156221307 5439 + protein coding gene PPARGC1 and ESRR induced regulator, muscle 1
Tssr40796 4 156215892 to 156215903 11 + TSS region transcription start site region 40796
Tssr40797 4 156215920 to 156215944 24 + TSS region transcription start site region 40797
Plekhn1 4 156221456 to 156228542 7086 - protein coding gene pleckstrin homology domain containing, family N member 1
Tssr45022 4 156228504 to 156228538 34 - TSS region transcription start site region 45022
Tssr45023 4 156228540 to 156228570 30 - TSS region transcription start site region 45023
Tssr45024 4 156228795 to 156228809 14 - TSS region transcription start site region 45024
Klhl17 4 156229044 to 156234857 5813 - protein coding gene kelch-like 17
Mir7658 4 156230059 to 156230115 56 - miRNA gene microRNA 7658
Cpgi15505 4 156233676 to 156235243 1567 CpG island CpG island 15505
Tssr45025 4 156234777 to 156234873 96 - TSS region transcription start site region 45025
Cpgi15506 4 156235505 to 156236600 1095 CpG island CpG island 15506
Tssr40798 4 156235999 to 156236050 51 + TSS region transcription start site region 40798
Noc2l 4 156236010 to 156247616 11606 + protein coding gene NOC2 like nucleolar associated transcriptional repressor
Tssr1406 4 156238741 to 156238745 4 + TSS region transcription start site region 1406
Tssr1407 4 156241331 to 156241372 41 + TSS region transcription start site region 1407
Tssr1408 4 156245453 to 156245470 17 + TSS region transcription start site region 1408