Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:155790843-155992890

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ankrd65 4 155790439 to 155799503 9064 + protein coding gene ankyrin repeat domain 65
Cpgi15486 4 155791610 to 155792114 504 CpG island CpG island 15486
Mrpl20 4 155802852 to 155808831 5979 + protein coding gene mitochondrial ribosomal protein L20
Tssr40716 4 155802913 to 155802924 11 + TSS region transcription start site region 40716
Cpgi15487 4 155803381 to 155804067 686 CpG island CpG island 15487
Tssr40717 4 155803600 to 155803640 40 + TSS region transcription start site region 40717
Cpgi15488 4 155811880 to 155813247 1367 CpG island CpG island 15488
AI428898 4 155811968 to 155812390 422 unclassified gene expressed sequence AI428898
Tssr40718 4 155812465 to 155812476 11 + TSS region transcription start site region 40718
Ccnl2 4 155812489 to 155824543 12054 + protein coding gene cyclin L2
Tssr40719 4 155812494 to 155812529 35 + TSS region transcription start site region 40719
Tssr40720 4 155813114 to 155813124 10 + TSS region transcription start site region 40720
Cpgi15489 4 155831195 to 155832392 1197 CpG island CpG island 15489
Aurkaip1 4 155831269 to 155833098 1829 + protein coding gene aurora kinase A interacting protein 1
Tssr40721 4 155831309 to 155831341 32 + TSS region transcription start site region 40721
Tssr40722 4 155831616 to 155831628 12 + TSS region transcription start site region 40722
Tssr40723 4 155831630 to 155831698 68 + TSS region transcription start site region 40723
Mxra8os 4 155839492 to 155840178 686 - antisense lncRNA gene matrix-remodelling associated 8, opposite strand
Tssr40724 4 155839675 to 155839684 9 + TSS region transcription start site region 40724
Mxra8 4 155839680 to 155844088 4408 + protein coding gene matrix-remodelling associated 8
Tssr40725 4 155839693 to 155839704 11 + TSS region transcription start site region 40725
Tssr40726 4 155839724 to 155839762 38 + TSS region transcription start site region 40726
Tssr40727 4 155839769 to 155839824 55 + TSS region transcription start site region 40727
Tssr40728 4 155839827 to 155839840 13 + TSS region transcription start site region 40728
Cpgi15490 4 155840812 to 155842163 1351 CpG island CpG island 15490
Tssr44980 4 155841028 to 155841055 27 - TSS region transcription start site region 44980
Tssr44981 4 155841094 to 155841104 10 - TSS region transcription start site region 44981
Tssr40729 4 155841101 to 155841108 7 + TSS region transcription start site region 40729
Tssr40730 4 155841121 to 155841138 17 + TSS region transcription start site region 40730
Tssr40731 4 155841146 to 155841167 21 + TSS region transcription start site region 40731
Tssr40732 4 155841168 to 155841175 7 + TSS region transcription start site region 40732
Tssr40733 4 155841412 to 155841476 64 + TSS region transcription start site region 40733
Tssr40734 4 155843051 to 155843100 49 + TSS region transcription start site region 40734
Cpgi15491 4 155846714 to 155848257 1543 CpG island CpG island 15491
Tssr40735 4 155847393 to 155847467 74 + TSS region transcription start site region 40735
Dvl1 4 155847402 to 155859303 11901 + protein coding gene dishevelled segment polarity protein 1
Tssr40736 4 155847499 to 155847516 17 + TSS region transcription start site region 40736
Cocrb16 4 155859268 to 155863353 4085 QTL cocaine related behavior 16
Tas1r3 4 155859268 to 155863353 4085 - protein coding gene taste receptor, type 1, member 3
Cptp 4 155864723 to 155869440 4717 - protein coding gene ceramide-1-phosphate transfer protein
Cpgi15492 4 155868833 to 155870136 1303 CpG island CpG island 15492
Tssr44982 4 155869394 to 155869455 61 - TSS region transcription start site region 44982
Tssr40737 4 155869540 to 155869623 83 + TSS region transcription start site region 40737
Ints11 4 155869547 to 155889103 19556 + protein coding gene integrator complex subunit 11
Tssr44983 4 155869828 to 155869832 4 - TSS region transcription start site region 44983
Pusl1 4 155888857 to 155891851 2994 - protein coding gene pseudouridylate synthase-like 1
Cpgi15493 4 155890843 to 155892890 2047 CpG island CpG island 15493
Tssr44984 4 155891701 to 155891782 81 - TSS region transcription start site region 44984
Tssr40738 4 155891825 to 155891892 67 + TSS region transcription start site region 40738
Acap3 4 155891875 to 155907251 15376 + protein coding gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
Tssr1403 4 155892243 to 155892250 7 + TSS region transcription start site region 1403
Tssr40739 4 155892254 to 155892268 14 + TSS region transcription start site region 40739
Tssr40740 4 155892281 to 155892304 23 + TSS region transcription start site region 40740
Tssr40741 4 155892319 to 155892322 3 + TSS region transcription start site region 40741
Gm20552 4 155909065 to 155910700 1635 - pseudogene predicted gene, 20552
Gm22991 4 155911630 to 155911750 120 + miRNA gene predicted gene, 22991
Cpgi15494 4 155943141 to 155944544 1403 CpG island CpG island 15494
Tssr44985 4 155943597 to 155943640 43 - TSS region transcription start site region 44985
Tssr40742 4 155943824 to 155943883 59 + TSS region transcription start site region 40742
Ube2j2 4 155943831 to 155959604 15773 + protein coding gene ubiquitin-conjugating enzyme E2J 2
Tssr40743 4 155944037 to 155944048 11 + TSS region transcription start site region 40743
Tssr40744 4 155962292 to 155962337 45 + TSS region transcription start site region 40744
Cpgi15495 4 155962304 to 155962773 469 CpG island CpG island 15495
C1qtnf12 4 155962318 to 155966629 4311 + protein coding gene C1q and tumor necrosis factor related 12
Tssr40745 4 155962342 to 155962392 50 + TSS region transcription start site region 40745
Tssr40746 4 155962411 to 155962420 9 + TSS region transcription start site region 40746
Tssr40747 4 155962541 to 155962576 35 + TSS region transcription start site region 40747
Gm42365 4 155962744 to 155963909 1165 + lncRNA gene predicted gene, 42365
Tssr44986 4 155985318 to 155985319 1 - TSS region transcription start site region 44986
B3galt6 4 155989466 to 155992649 3183 - protein coding gene UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6
Cpgi15496 4 155991476 to 155993837 2361 CpG island CpG island 15496
Tssr44987 4 155992331 to 155992342 11 - TSS region transcription start site region 44987
Tssr40748 4 155992400 to 155992413 13 + TSS region transcription start site region 40748
Tssr44988 4 155992604 to 155992674 70 - TSS region transcription start site region 44988
Sdf4 4 155992872 to 156013610 20738 + protein coding gene stromal cell derived factor 4