Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:155717969-156710050

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253 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssu72 4 155704805 to 155733879 29074 + protein coding gene Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
Tssr40709 4 155718269 to 155718281 12 + TSS region transcription start site region 40709
Gm22573 4 155720040 to 155720141 101 - snRNA gene predicted gene, 22573
Tssr40710 4 155721731 to 155721734 3 + TSS region transcription start site region 40710
Tssr40711 4 155728342 to 155728352 10 + TSS region transcription start site region 40711
1500002C15Rik 4 155732545 to 155734727 2182 - antisense lncRNA gene RIKEN cDNA 1500002C15 gene
Cpgi15479 4 155734190 to 155735909 1719 CpG island CpG island 15479
Tmem240 4 155734800 to 155740564 5764 + protein coding gene transmembrane protein 240
Tssr40712 4 155734825 to 155734846 21 + TSS region transcription start site region 40712
Tssr44967 4 155735976 to 155735987 11 - TSS region transcription start site region 44967
Cpgi15480 4 155739486 to 155740117 631 CpG island CpG island 15480
Atad3a 4 155740641 to 155761093 20452 - protein coding gene ATPase family, AAA domain containing 3A
Cpgi15481 4 155760448 to 155761304 856 CpG island CpG island 15481
Tssr44968 4 155761042 to 155761109 67 - TSS region transcription start site region 44968
Tssr40713 4 155761148 to 155761166 18 + TSS region transcription start site region 40713
Atad3aos 4 155761192 to 155763560 2368 + antisense lncRNA gene ATPase family, AAA domain containing 3A, opposite strand
Tssr40714 4 155761202 to 155761235 33 + TSS region transcription start site region 40714
Tssr40715 4 155761335 to 155761339 4 + TSS region transcription start site region 40715
Cpgi15482 4 155761567 to 155761875 308 CpG island CpG island 15482
Vwa1 4 155768495 to 155774561 6066 - protein coding gene von Willebrand factor A domain containing 1
Cpgi15483 4 155769885 to 155771061 1176 CpG island CpG island 15483
Gm26840 4 155769969 to 155776161 6192 + lincRNA gene predicted gene, 26840
Cpgi15484 4 155774234 to 155774826 592 CpG island CpG island 15484
Tssr44969 4 155774503 to 155774555 52 - TSS region transcription start site region 44969
Tssr44970 4 155774563 to 155774574 11 - TSS region transcription start site region 44970
Tmem88b 4 155781591 to 155785874 4283 - protein coding gene transmembrane protein 88B
Cpgi15485 4 155784015 to 155784752 737 CpG island CpG island 15485
Tssr44971 4 155784022 to 155784030 8 - TSS region transcription start site region 44971
Tssr44972 4 155784898 to 155784933 35 - TSS region transcription start site region 44972
Tssr44973 4 155784936 to 155784954 18 - TSS region transcription start site region 44973
Tssr44974 4 155785008 to 155785018 10 - TSS region transcription start site region 44974
Tssr44975 4 155785022 to 155785039 17 - TSS region transcription start site region 44975
Tssr44976 4 155785049 to 155785052 3 - TSS region transcription start site region 44976
Tssr44977 4 155785059 to 155785074 15 - TSS region transcription start site region 44977
Tssr44978 4 155785864 to 155785880 16 - TSS region transcription start site region 44978
Tssr44979 4 155785883 to 155785920 37 - TSS region transcription start site region 44979
Gm27743 4 155789581 to 155789706 125 + miRNA gene predicted gene, 27743
Ankrd65 4 155790439 to 155799503 9064 + protein coding gene ankyrin repeat domain 65
Cpgi15486 4 155791610 to 155792114 504 CpG island CpG island 15486
Mrpl20 4 155802852 to 155808831 5979 + protein coding gene mitochondrial ribosomal protein L20
Tssr40716 4 155802913 to 155802924 11 + TSS region transcription start site region 40716
Cpgi15487 4 155803381 to 155804067 686 CpG island CpG island 15487
Tssr40717 4 155803600 to 155803640 40 + TSS region transcription start site region 40717
Cpgi15488 4 155811880 to 155813247 1367 CpG island CpG island 15488
AI428898 4 155811968 to 155812390 422 unclassified gene expressed sequence AI428898
Tssr40718 4 155812465 to 155812476 11 + TSS region transcription start site region 40718
Ccnl2 4 155812489 to 155824543 12054 + protein coding gene cyclin L2
Tssr40719 4 155812494 to 155812529 35 + TSS region transcription start site region 40719
Tssr40720 4 155813114 to 155813124 10 + TSS region transcription start site region 40720
Cpgi15489 4 155831195 to 155832392 1197 CpG island CpG island 15489
Aurkaip1 4 155831269 to 155833098 1829 + protein coding gene aurora kinase A interacting protein 1
Tssr40721 4 155831309 to 155831341 32 + TSS region transcription start site region 40721
Tssr40722 4 155831616 to 155831628 12 + TSS region transcription start site region 40722
Tssr40723 4 155831630 to 155831698 68 + TSS region transcription start site region 40723
Mxra8os 4 155839492 to 155840178 686 - antisense lncRNA gene matrix-remodelling associated 8, opposite strand
Tssr40724 4 155839675 to 155839684 9 + TSS region transcription start site region 40724
Mxra8 4 155839680 to 155844088 4408 + protein coding gene matrix-remodelling associated 8
Tssr40725 4 155839693 to 155839704 11 + TSS region transcription start site region 40725
Tssr40726 4 155839724 to 155839762 38 + TSS region transcription start site region 40726
Tssr40727 4 155839769 to 155839824 55 + TSS region transcription start site region 40727
Tssr40728 4 155839827 to 155839840 13 + TSS region transcription start site region 40728
Cpgi15490 4 155840812 to 155842163 1351 CpG island CpG island 15490
Tssr44980 4 155841028 to 155841055 27 - TSS region transcription start site region 44980
Tssr44981 4 155841094 to 155841104 10 - TSS region transcription start site region 44981
Tssr40729 4 155841101 to 155841108 7 + TSS region transcription start site region 40729
Tssr40730 4 155841121 to 155841138 17 + TSS region transcription start site region 40730
Tssr40731 4 155841146 to 155841167 21 + TSS region transcription start site region 40731
Tssr40732 4 155841168 to 155841175 7 + TSS region transcription start site region 40732
Tssr40733 4 155841412 to 155841476 64 + TSS region transcription start site region 40733
Tssr40734 4 155843051 to 155843100 49 + TSS region transcription start site region 40734
Cpgi15491 4 155846714 to 155848257 1543 CpG island CpG island 15491
Tssr40735 4 155847393 to 155847467 74 + TSS region transcription start site region 40735
Dvl1 4 155847402 to 155859303 11901 + protein coding gene dishevelled segment polarity protein 1
Tssr40736 4 155847499 to 155847516 17 + TSS region transcription start site region 40736
Cocrb16 4 155859268 to 155863353 4085 QTL cocaine related behavior 16
Tas1r3 4 155859268 to 155863353 4085 - protein coding gene taste receptor, type 1, member 3
Cptp 4 155864723 to 155869440 4717 - protein coding gene ceramide-1-phosphate transfer protein
Cpgi15492 4 155868833 to 155870136 1303 CpG island CpG island 15492
Tssr44982 4 155869394 to 155869455 61 - TSS region transcription start site region 44982
Tssr40737 4 155869540 to 155869623 83 + TSS region transcription start site region 40737
Ints11 4 155869547 to 155889103 19556 + protein coding gene integrator complex subunit 11
Tssr44983 4 155869828 to 155869832 4 - TSS region transcription start site region 44983
Pusl1 4 155888857 to 155891851 2994 - protein coding gene pseudouridylate synthase-like 1
Cpgi15493 4 155890843 to 155892890 2047 CpG island CpG island 15493
Tssr44984 4 155891701 to 155891782 81 - TSS region transcription start site region 44984
Tssr40738 4 155891825 to 155891892 67 + TSS region transcription start site region 40738
Acap3 4 155891875 to 155907251 15376 + protein coding gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
Tssr1403 4 155892243 to 155892250 7 + TSS region transcription start site region 1403
Tssr40739 4 155892254 to 155892268 14 + TSS region transcription start site region 40739
Tssr40740 4 155892281 to 155892304 23 + TSS region transcription start site region 40740
Tssr40741 4 155892319 to 155892322 3 + TSS region transcription start site region 40741
Gm20552 4 155909065 to 155910700 1635 - pseudogene predicted gene, 20552
Gm22991 4 155911630 to 155911750 120 + miRNA gene predicted gene, 22991
Cpgi15494 4 155943141 to 155944544 1403 CpG island CpG island 15494
Tssr44985 4 155943597 to 155943640 43 - TSS region transcription start site region 44985
Tssr40742 4 155943824 to 155943883 59 + TSS region transcription start site region 40742
Ube2j2 4 155943831 to 155959604 15773 + protein coding gene ubiquitin-conjugating enzyme E2J 2
Tssr40743 4 155944037 to 155944048 11 + TSS region transcription start site region 40743
Tssr40744 4 155962292 to 155962337 45 + TSS region transcription start site region 40744
Cpgi15495 4 155962304 to 155962773 469 CpG island CpG island 15495
C1qtnf12 4 155962318 to 155966629 4311 + protein coding gene C1q and tumor necrosis factor related 12
Tssr40745 4 155962342 to 155962392 50 + TSS region transcription start site region 40745
Tssr40746 4 155962411 to 155962420 9 + TSS region transcription start site region 40746
Tssr40747 4 155962541 to 155962576 35 + TSS region transcription start site region 40747
Gm42365 4 155962744 to 155963909 1165 + lncRNA gene predicted gene, 42365
Tssr44986 4 155985318 to 155985319 1 - TSS region transcription start site region 44986
B3galt6 4 155989466 to 155992649 3183 - protein coding gene UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6
Cpgi15496 4 155991476 to 155993837 2361 CpG island CpG island 15496
Tssr44987 4 155992331 to 155992342 11 - TSS region transcription start site region 44987
Tssr40748 4 155992400 to 155992413 13 + TSS region transcription start site region 40748
Tssr44988 4 155992604 to 155992674 70 - TSS region transcription start site region 44988
Sdf4 4 155992872 to 156013610 20738 + protein coding gene stromal cell derived factor 4
Tssr1404 4 155992939 to 155992946 7 + TSS region transcription start site region 1404
Tssr40749 4 155993143 to 155993187 44 + TSS region transcription start site region 40749
Tssr40750 4 155993230 to 155993296 66 + TSS region transcription start site region 40750
Tssr40751 4 155993305 to 155993316 11 + TSS region transcription start site region 40751
Tssr40752 4 155993448 to 155993455 7 + TSS region transcription start site region 40752
Tssr40753 4 155996339 to 155996356 17 + TSS region transcription start site region 40753
Tssr44989 4 155999450 to 155999496 46 - TSS region transcription start site region 44989
Tssr40754 4 156002273 to 156002276 3 + TSS region transcription start site region 40754
Tssr40755 4 156006904 to 156006931 27 + TSS region transcription start site region 40755
Tssr40756 4 156008578 to 156008603 25 + TSS region transcription start site region 40756
Tssr40757 4 156008616 to 156008632 16 + TSS region transcription start site region 40757
Tssr40758 4 156008638 to 156008651 13 + TSS region transcription start site region 40758
Tssr40759 4 156008658 to 156008666 8 + TSS region transcription start site region 40759
Tssr40760 4 156008681 to 156008692 11 + TSS region transcription start site region 40760
Tssr40761 4 156008696 to 156008706 10 + TSS region transcription start site region 40761
Tssr40762 4 156008723 to 156008736 13 + TSS region transcription start site region 40762
Tssr40763 4 156008828 to 156008850 22 + TSS region transcription start site region 40763
Tssr40764 4 156008861 to 156008884 23 + TSS region transcription start site region 40764
Tssr40765 4 156009147 to 156009231 84 + TSS region transcription start site region 40765
Tssr40766 4 156012557 to 156012566 9 + TSS region transcription start site region 40766
Tssr40767 4 156012581 to 156012586 5 + TSS region transcription start site region 40767
Tssr40768 4 156012600 to 156012605 5 + TSS region transcription start site region 40768
Tssr40769 4 156012808 to 156012819 11 + TSS region transcription start site region 40769
Tssr40770 4 156012973 to 156013021 48 + TSS region transcription start site region 40770
Tssr44990 4 156013734 to 156013747 13 - TSS region transcription start site region 44990
Tssr40771 4 156013835 to 156013849 14 + TSS region transcription start site region 40771
Tnfrsf4 4 156013843 to 156016612 2769 + protein coding gene tumor necrosis factor receptor superfamily, member 4
Tssr40772 4 156013858 to 156013872 14 + TSS region transcription start site region 40772
Tssr40773 4 156013898 to 156013909 11 + TSS region transcription start site region 40773
Tssr40774 4 156014307 to 156014318 11 + TSS region transcription start site region 40774
Tssr40775 4 156014695 to 156014708 13 + TSS region transcription start site region 40775
Tssr44991 4 156015925 to 156015950 25 - TSS region transcription start site region 44991
Tssr44992 4 156016596 to 156016611 15 - TSS region transcription start site region 44992
Tssr40776 4 156016799 to 156016804 5 + TSS region transcription start site region 40776
Gm37090 4 156018556 to 156022660 4104 - unclassified gene predicted gene, 37090
Gm10560 4 156021645 to 156023824 2179 - lncRNA gene predicted gene 10560
Gm16008 4 156022008 to 156031643 9635 - antisense lncRNA gene predicted gene 16008
Tssr44993 4 156022275 to 156022286 11 - TSS region transcription start site region 44993
Tssr40777 4 156022546 to 156022550 4 + TSS region transcription start site region 40777
Gm25982 4 156023058 to 156023158 100 - snRNA gene predicted gene, 25982
Tssr40778 4 156026120 to 156026132 12 + TSS region transcription start site region 40778
Tnfrsf18 4 156026164 to 156028895 2731 + protein coding gene tumor necrosis factor receptor superfamily, member 18
Tssr44994 4 156026206 to 156026225 19 - TSS region transcription start site region 44994
Tssr40779 4 156026304 to 156026371 67 + TSS region transcription start site region 40779
Tssr40780 4 156026375 to 156026387 12 + TSS region transcription start site region 40780
Tssr40781 4 156027170 to 156027175 5 + TSS region transcription start site region 40781
Tssr40782 4 156027468 to 156027478 10 + TSS region transcription start site region 40782
Tssr40783 4 156027482 to 156027496 14 + TSS region transcription start site region 40783
Tssr40784 4 156027526 to 156027535 9 + TSS region transcription start site region 40784
Tssr40785 4 156028945 to 156028956 11 + TSS region transcription start site region 40785
Tssr40786 4 156029752 to 156029763 11 + TSS region transcription start site region 40786
Tssr44995 4 156030692 to 156030701 9 - TSS region transcription start site region 44995
Tssr44996 4 156030748 to 156030764 16 - TSS region transcription start site region 44996
Tssr40787 4 156030961 to 156030974 13 + TSS region transcription start site region 40787
Cpgi15497 4 156031604 to 156032159 555 CpG island CpG island 15497
Tssr44997 4 156031618 to 156031635 17 - TSS region transcription start site region 44997
Tssr44998 4 156031655 to 156031674 19 - TSS region transcription start site region 44998
Cpgi15498 4 156034707 to 156035502 795 CpG island CpG island 15498
Ttll10 4 156034840 to 156059414 24574 - protein coding gene tubulin tyrosine ligase-like family, member 10
Tssr44999 4 156047932 to 156047972 40 - TSS region transcription start site region 44999
Tssr45000 4 156050465 to 156050473 8 - TSS region transcription start site region 45000
Tssr45001 4 156050498 to 156050506 8 - TSS region transcription start site region 45001
Tssr45002 4 156050733 to 156050761 28 - TSS region transcription start site region 45002
Tssr45003 4 156050762 to 156050772 10 - TSS region transcription start site region 45003
Tssr45004 4 156050785 to 156050796 11 - TSS region transcription start site region 45004
Gm13648 4 156052715 to 156059802 7087 - lncRNA gene predicted gene 13648
Mirc4 4 156053905 to 156055750 1845 complex/cluster/region microRNA cluster 4, including Mir429 through Mir200b
Mir429 4 156053905 to 156053987 82 - miRNA gene microRNA 429
Tssr45005 4 156053913 to 156053915 2 - TSS region transcription start site region 45005
Mir200a 4 156054896 to 156054985 89 - miRNA gene microRNA 200a
Mir200b 4 156055681 to 156055750 69 - miRNA gene microRNA 200b
Tssr45006 4 156059429 to 156059435 6 - TSS region transcription start site region 45006
Tssr45007 4 156059807 to 156059830 23 - TSS region transcription start site region 45007
Tssr40788 4 156060058 to 156060068 10 + TSS region transcription start site region 40788
Tssr40789 4 156064339 to 156064351 12 + TSS region transcription start site region 40789
Cpgi15499 4 156077525 to 156078428 903 CpG island CpG island 15499
Tssr45008 4 156084303 to 156084329 26 - TSS region transcription start site region 45008
Cpgi15500 4 156109629 to 156110501 872 CpG island CpG island 15500
Tssr40790 4 156109971 to 156110004 33 + TSS region transcription start site region 40790
9430015G10Rik 4 156109998 to 156127265 17267 + protein coding gene RIKEN cDNA 9430015G10 gene
Tssr40791 4 156110013 to 156110053 40 + TSS region transcription start site region 40791
Tssr40792 4 156130512 to 156130517 5 + TSS region transcription start site region 40792
Rnf223 4 156130513 to 156133420 2907 + protein coding gene ring finger 223
D4Dcr37 4 156146710 to 156146805 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 37
Agrn 4 156165290 to 156197488 32198 - protein coding gene agrin
Elorr3 4 156183778 to 3722677 -152461101 QTL ethanol induced loss of righting response 3
Cpgi15501 4 156186063 to 156186359 296 CpG island CpG island 15501
Tssr45009 4 156186072 to 156186091 19 - TSS region transcription start site region 45009