Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:155619805-155818879

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc35e2 4 155601416 to 155623340 21924 + protein coding gene solute carrier family 35, member E2
Gm16023 4 155608300 to 155624755 16455 - lncRNA gene predicted gene 16023
Gm10563 4 155614413 to 155645408 30995 - protein coding gene predicted gene 10563
Tssr44956 4 155624285 to 155624321 36 - TSS region transcription start site region 44956
Tssr1400 4 155624354 to 155624367 13 - TSS region transcription start site region 1400
Cpgi15474 4 155624392 to 155625300 908 CpG island CpG island 15474
Tssr40686 4 155624499 to 155624514 15 + TSS region transcription start site region 40686
Tssr44957 4 155624560 to 155624574 14 - TSS region transcription start site region 44957
Tssr44958 4 155624577 to 155624634 57 - TSS region transcription start site region 44958
Tssr44959 4 155624733 to 155624773 40 - TSS region transcription start site region 44959
Cdk11b 4 155624852 to 155649935 25083 + protein coding gene cyclin-dependent kinase 11B
Tssr40687 4 155624853 to 155624929 76 + TSS region transcription start site region 40687
Tssr40688 4 155624931 to 155624940 9 + TSS region transcription start site region 40688
Tssr40689 4 155624967 to 155624977 10 + TSS region transcription start site region 40689
Tssr40690 4 155625197 to 155625216 19 + TSS region transcription start site region 40690
Tssr1401 4 155625230 to 155625240 10 + TSS region transcription start site region 1401
Tssr40691 4 155625522 to 155625555 33 + TSS region transcription start site region 40691
Tssr40692 4 155626808 to 155626825 17 + TSS region transcription start site region 40692
Tssr40693 4 155630521 to 155630533 12 + TSS region transcription start site region 40693
Tssr1402 4 155630548 to 155630559 11 + TSS region transcription start site region 1402
Tssr40694 4 155638511 to 155638523 12 + TSS region transcription start site region 40694
Tssr40695 4 155638543 to 155638555 12 + TSS region transcription start site region 40695
Tssr40696 4 155638558 to 155638574 16 + TSS region transcription start site region 40696
Tssr40697 4 155638578 to 155638591 13 + TSS region transcription start site region 40697
Mmp23 4 155650655 to 155653384 2729 - protein coding gene matrix metallopeptidase 23
Cpgi15475 4 155652172 to 155655602 3430 CpG island CpG island 15475
Tssr44960 4 155653184 to 155653236 52 - TSS region transcription start site region 44960
Mib2 4 155654677 to 155669198 14521 - protein coding gene mindbomb E3 ubiquitin protein ligase 2
Tssr44961 4 155655005 to 155655024 19 - TSS region transcription start site region 44961
Cpgi15476 4 155668584 to 155669644 1060 CpG island CpG island 15476
Tssr44962 4 155669119 to 155669163 44 - TSS region transcription start site region 44962
Tssr44963 4 155669171 to 155669231 60 - TSS region transcription start site region 44963
Tssr40698 4 155669666 to 155669674 8 + TSS region transcription start site region 40698
Tssr40699 4 155670479 to 155670502 23 + TSS region transcription start site region 40699
Cpgi15477 4 155693877 to 155695431 1554 CpG island CpG island 15477
Tssr40700 4 155694311 to 155694375 64 + TSS region transcription start site region 40700
Fndc10 4 155694342 to 155696481 2139 + protein coding gene fibronectin type III domain containing 10
Tssr40701 4 155694455 to 155694523 68 + TSS region transcription start site region 40701
Tssr44964 4 155697002 to 155697018 16 - TSS region transcription start site region 44964
Tssr44965 4 155697029 to 155697042 13 - TSS region transcription start site region 44965
Cpgi15478 4 155704674 to 155705909 1235 CpG island CpG island 15478
Tssr40702 4 155704789 to 155704834 45 + TSS region transcription start site region 40702
Ssu72 4 155704805 to 155733879 29074 + protein coding gene Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
Tssr40703 4 155704878 to 155704887 9 + TSS region transcription start site region 40703
Tssr44966 4 155704960 to 155704980 20 - TSS region transcription start site region 44966
Tssr40704 4 155705046 to 155705057 11 + TSS region transcription start site region 40704
Tssr40705 4 155705088 to 155705183 95 + TSS region transcription start site region 40705
Tssr40706 4 155705272 to 155705320 48 + TSS region transcription start site region 40706
Tssr40707 4 155705322 to 155705349 27 + TSS region transcription start site region 40707
Tssr40708 4 155705354 to 155705372 18 + TSS region transcription start site region 40708
Tssr40709 4 155718269 to 155718281 12 + TSS region transcription start site region 40709
Gm22573 4 155720040 to 155720141 101 - snRNA gene predicted gene, 22573
Tssr40710 4 155721731 to 155721734 3 + TSS region transcription start site region 40710
Tssr40711 4 155728342 to 155728352 10 + TSS region transcription start site region 40711
1500002C15Rik 4 155732545 to 155734727 2182 - antisense lncRNA gene RIKEN cDNA 1500002C15 gene
Cpgi15479 4 155734190 to 155735909 1719 CpG island CpG island 15479
Tmem240 4 155734800 to 155740564 5764 + protein coding gene transmembrane protein 240
Tssr40712 4 155734825 to 155734846 21 + TSS region transcription start site region 40712
Tssr44967 4 155735976 to 155735987 11 - TSS region transcription start site region 44967
Cpgi15480 4 155739486 to 155740117 631 CpG island CpG island 15480
Atad3a 4 155740641 to 155761093 20452 - protein coding gene ATPase family, AAA domain containing 3A
Cpgi15481 4 155760448 to 155761304 856 CpG island CpG island 15481
Tssr44968 4 155761042 to 155761109 67 - TSS region transcription start site region 44968
Tssr40713 4 155761148 to 155761166 18 + TSS region transcription start site region 40713
Atad3aos 4 155761192 to 155763560 2368 + antisense lncRNA gene ATPase family, AAA domain containing 3A, opposite strand
Tssr40714 4 155761202 to 155761235 33 + TSS region transcription start site region 40714
Tssr40715 4 155761335 to 155761339 4 + TSS region transcription start site region 40715
Cpgi15482 4 155761567 to 155761875 308 CpG island CpG island 15482
Vwa1 4 155768495 to 155774561 6066 - protein coding gene von Willebrand factor A domain containing 1
Cpgi15483 4 155769885 to 155771061 1176 CpG island CpG island 15483
Gm26840 4 155769969 to 155776161 6192 + lincRNA gene predicted gene, 26840
Cpgi15484 4 155774234 to 155774826 592 CpG island CpG island 15484
Tssr44969 4 155774503 to 155774555 52 - TSS region transcription start site region 44969
Tssr44970 4 155774563 to 155774574 11 - TSS region transcription start site region 44970
Tmem88b 4 155781591 to 155785874 4283 - protein coding gene transmembrane protein 88B
Cpgi15485 4 155784015 to 155784752 737 CpG island CpG island 15485
Tssr44971 4 155784022 to 155784030 8 - TSS region transcription start site region 44971
Tssr44972 4 155784898 to 155784933 35 - TSS region transcription start site region 44972
Tssr44973 4 155784936 to 155784954 18 - TSS region transcription start site region 44973
Tssr44974 4 155785008 to 155785018 10 - TSS region transcription start site region 44974
Tssr44975 4 155785022 to 155785039 17 - TSS region transcription start site region 44975
Tssr44976 4 155785049 to 155785052 3 - TSS region transcription start site region 44976
Tssr44977 4 155785059 to 155785074 15 - TSS region transcription start site region 44977
Tssr44978 4 155785864 to 155785880 16 - TSS region transcription start site region 44978
Tssr44979 4 155785883 to 155785920 37 - TSS region transcription start site region 44979
Gm27743 4 155789581 to 155789706 125 + miRNA gene predicted gene, 27743
Ankrd65 4 155790439 to 155799503 9064 + protein coding gene ankyrin repeat domain 65
Cpgi15486 4 155791610 to 155792114 504 CpG island CpG island 15486
Mrpl20 4 155802852 to 155808831 5979 + protein coding gene mitochondrial ribosomal protein L20
Tssr40716 4 155802913 to 155802924 11 + TSS region transcription start site region 40716
Cpgi15487 4 155803381 to 155804067 686 CpG island CpG island 15487
Tssr40717 4 155803600 to 155803640 40 + TSS region transcription start site region 40717
Cpgi15488 4 155811880 to 155813247 1367 CpG island CpG island 15488
AI428898 4 155811968 to 155812390 422 unclassified gene expressed sequence AI428898
Tssr40718 4 155812465 to 155812476 11 + TSS region transcription start site region 40718
Ccnl2 4 155812489 to 155824543 12054 + protein coding gene cyclin L2
Tssr40719 4 155812494 to 155812529 35 + TSS region transcription start site region 40719
Tssr40720 4 155813114 to 155813124 10 + TSS region transcription start site region 40720