Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:155194394-156544455

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424 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ski 4 155154075 to 155222592 68517 - protein coding gene ski sarcoma viral oncogene homolog (avian)
Tssr44929 4 155197570 to 155197575 5 - TSS region transcription start site region 44929
Tssr44930 4 155200757 to 155200771 14 - TSS region transcription start site region 44930
Cpgi15462 4 155214957 to 155215116 159 CpG island CpG island 15462
Tssr44931 4 155217205 to 155217212 7 - TSS region transcription start site region 44931
Tssr40622 4 155217532 to 155217562 30 + TSS region transcription start site region 40622
Cpgi15463 4 155221445 to 155223903 2458 CpG island CpG island 15463
Tssr40623 4 155221677 to 155221681 4 + TSS region transcription start site region 40623
Tssr44932 4 155223068 to 155223086 18 - TSS region transcription start site region 44932
Tssr44933 4 155223206 to 155223218 12 - TSS region transcription start site region 44933
Tssr44934 4 155223233 to 155223249 16 - TSS region transcription start site region 44934
Gm42364 4 155225440 to 155228645 3205 - lncRNA gene predicted gene, 42364
Tssr40624 4 155234536 to 155234547 11 + TSS region transcription start site region 40624
Tssr40625 4 155235486 to 155235522 36 + TSS region transcription start site region 40625
Gm33187 4 155240265 to 155243884 3619 + lncRNA gene predicted gene, 33187
Tssr40626 4 155246860 to 155246872 12 + TSS region transcription start site region 40626
Cpgi15464 4 155249637 to 155250815 1178 CpG island CpG island 15464
Faap20 4 155249802 to 155256687 6885 + protein coding gene Fanconi anemia core complex associated protein 20
Tssr40627 4 155249960 to 155250010 50 + TSS region transcription start site region 40627
Tssr40628 4 155250088 to 155250123 35 + TSS region transcription start site region 40628
Tssr40629 4 155250189 to 155250201 12 + TSS region transcription start site region 40629
Tssr40630 4 155250283 to 155250294 11 + TSS region transcription start site region 40630
Prkcz 4 155260129 to 155361361 101232 - protein coding gene protein kinase C, zeta
Tssr44935 4 155328646 to 155328690 44 - TSS region transcription start site region 44935
Gm27200 4 155343683 to 155344465 782 + antisense lncRNA gene predicted gene 27200
Cpgi15465 4 155344595 to 155345911 1316 CpG island CpG island 15465
Tssr44936 4 155345491 to 155345494 3 - TSS region transcription start site region 44936
Tssr44937 4 155345640 to 155345649 9 - TSS region transcription start site region 44937
Tssr44938 4 155345678 to 155345689 11 - TSS region transcription start site region 44938
Tssr44939 4 155345696 to 155345799 103 - TSS region transcription start site region 44939
Tssr1398 4 155352714 to 155352715 1 + TSS region transcription start site region 1398
Cpgi15466 4 155360887 to 155362133 1246 CpG island CpG island 15466
Tssr44940 4 155361322 to 155361346 24 - TSS region transcription start site region 44940
Tssr44941 4 155361356 to 155361433 77 - TSS region transcription start site region 44941
Tssr40631 4 155361667 to 155361678 11 + TSS region transcription start site region 40631
Gabrd 4 155384979 to 155398069 13090 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit delta
Tssr40632 4 155397039 to 155397051 12 + TSS region transcription start site region 40632
Tssr40633 4 155397055 to 155397069 14 + TSS region transcription start site region 40633
Tssr40634 4 155397083 to 155397090 7 + TSS region transcription start site region 40634
Cpgi15467 4 155397335 to 155398527 1192 CpG island CpG island 15467
Tssr44942 4 155397981 to 155397997 16 - TSS region transcription start site region 44942
Tssr44943 4 155398011 to 155398028 17 - TSS region transcription start site region 44943
Tssr44944 4 155398037 to 155398055 18 - TSS region transcription start site region 44944
Tssr44945 4 155398059 to 155398080 21 - TSS region transcription start site region 44945
Tssr40635 4 155398165 to 155398197 32 + TSS region transcription start site region 40635
5830444B04Rik 4 155400969 to 155421704 20735 - lncRNA gene RIKEN cDNA 5830444B04 gene
Cpgi15468 4 155408983 to 155409723 740 CpG island CpG island 15468
Cfap74 4 155409190 to 155466823 57633 + protein coding gene cilia and flagella associated protein 74
Tssr40636 4 155409201 to 155409266 65 + TSS region transcription start site region 40636
Tssr40637 4 155409270 to 155409280 10 + TSS region transcription start site region 40637
Tssr40638 4 155409286 to 155409289 3 + TSS region transcription start site region 40638
Tssr44946 4 155411313 to 155411318 5 - TSS region transcription start site region 44946
9630009N12Rik 4 155411621 to 155412151 530 unclassified gene RIKEN cDNA 9630009N12 gene
Tssr44947 4 155414766 to 155414778 12 - TSS region transcription start site region 44947
Tssr44948 4 155414781 to 155414804 23 - TSS region transcription start site region 44948
Tssr44949 4 155414879 to 155414884 5 - TSS region transcription start site region 44949
Tssr40639 4 155414922 to 155414951 29 + TSS region transcription start site region 40639
Tssr40640 4 155414977 to 155414986 9 + TSS region transcription start site region 40640
Tssr40641 4 155415011 to 155415018 7 + TSS region transcription start site region 40641
Tssr40642 4 155466594 to 155466604 10 + TSS region transcription start site region 40642
Cpgi15469 4 155469038 to 155469648 610 CpG island CpG island 15469
Tmem52 4 155469114 to 155470858 1744 + protein coding gene transmembrane protein 52
Tssr40643 4 155469123 to 155469142 19 + TSS region transcription start site region 40643
D4Mit59 4 155475972 to 155476079 107 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 59
Cpgi15470 4 155481218 to 155481676 458 CpG island CpG island 15470
Tssr44950 4 155482887 to 155482897 10 - TSS region transcription start site region 44950
Cpgi15471 4 155490596 to 155492639 2043 CpG island CpG island 15471
Tssr40644 4 155491050 to 155491069 19 + TSS region transcription start site region 40644
Tssr44951 4 155491202 to 155491215 13 - TSS region transcription start site region 44951
Tssr44952 4 155491218 to 155491234 16 - TSS region transcription start site region 44952
Tssr40645 4 155491353 to 155491411 58 + TSS region transcription start site region 40645
Gnb1 4 155491361 to 155559269 67908 + protein coding gene guanine nucleotide binding protein (G protein), beta 1
Tssr40646 4 155495214 to 155495226 12 + TSS region transcription start site region 40646
Gm13171 4 155502316 to 155502706 390 - pseudogene predicted gene 13171
Tssr40647 4 155510522 to 155510525 3 + TSS region transcription start site region 40647
Tssr40648 4 155522529 to 155522543 14 + TSS region transcription start site region 40648
Tssr40649 4 155522560 to 155522591 31 + TSS region transcription start site region 40649
Tssr40650 4 155522592 to 155522622 30 + TSS region transcription start site region 40650
Tssr40651 4 155536797 to 155536801 4 + TSS region transcription start site region 40651
Tssr40652 4 155543056 to 155543076 20 + TSS region transcription start site region 40652
Tssr40653 4 155546855 to 155546869 14 + TSS region transcription start site region 40653
Tssr40654 4 155546975 to 155546992 17 + TSS region transcription start site region 40654
Tssr40655 4 155553418 to 155553435 17 + TSS region transcription start site region 40655
Tssr40656 4 155555064 to 155555081 17 + TSS region transcription start site region 40656
Tssr40657 4 155555146 to 155555192 46 + TSS region transcription start site region 40657
Tssr40658 4 155557163 to 155557200 37 + TSS region transcription start site region 40658
Tssr40659 4 155557741 to 155557753 12 + TSS region transcription start site region 40659
Tssr40660 4 155557940 to 155557968 28 + TSS region transcription start site region 40660
Tssr40661 4 155558021 to 155558043 22 + TSS region transcription start site region 40661
Tssr40662 4 155558110 to 155558115 5 + TSS region transcription start site region 40662
Tssr40663 4 155558257 to 155558279 22 + TSS region transcription start site region 40663
Tssr40664 4 155558795 to 155558808 13 + TSS region transcription start site region 40664
Tssr40665 4 155558958 to 155558981 23 + TSS region transcription start site region 40665
Tssr40666 4 155559772 to 155559808 36 + TSS region transcription start site region 40666
Tssr44953 4 155561892 to 155561898 6 - TSS region transcription start site region 44953
Tssr40667 4 155562348 to 155562413 65 + TSS region transcription start site region 40667
Nadk 4 155562392 to 155591001 28609 + protein coding gene NAD kinase
Tssr40668 4 155562414 to 155562425 11 + TSS region transcription start site region 40668
Tssr1399 4 155563264 to 155563274 10 + TSS region transcription start site region 1399
Tssr40669 4 155563307 to 155563321 14 + TSS region transcription start site region 40669
Cpgi15472 4 155563359 to 155564400 1041 CpG island CpG island 15472
Tssr40670 4 155563732 to 155563743 11 + TSS region transcription start site region 40670
Tssr40671 4 155563798 to 155563865 67 + TSS region transcription start site region 40671
Tssr40672 4 155577131 to 155577164 33 + TSS region transcription start site region 40672
Tssr40673 4 155577455 to 155577466 11 + TSS region transcription start site region 40673
Tssr40674 4 155582476 to 155582489 13 + TSS region transcription start site region 40674
Tssr40675 4 155582521 to 155582547 26 + TSS region transcription start site region 40675
Tssr40676 4 155582735 to 155582744 9 + TSS region transcription start site region 40676
Tssr40677 4 155582761 to 155582772 11 + TSS region transcription start site region 40677
Tssr40678 4 155587350 to 155587364 14 + TSS region transcription start site region 40678
Tssr40679 4 155587908 to 155587920 12 + TSS region transcription start site region 40679
Tssr40680 4 155589735 to 155589751 16 + TSS region transcription start site region 40680
B930046K06Rik 4 155599332 to 155601835 2503 unclassified non-coding RNA gene RIKEN cDNA B930046K06 gene
Cpgi15473 4 155601186 to 155602337 1151 CpG island CpG island 15473
Tssr44954 4 155601256 to 155601292 36 - TSS region transcription start site region 44954
Tssr40681 4 155601272 to 155601277 5 + TSS region transcription start site region 40681
Tssr40682 4 155601373 to 155601413 40 + TSS region transcription start site region 40682
Tssr40683 4 155601414 to 155601443 29 + TSS region transcription start site region 40683
Slc35e2 4 155601416 to 155623340 21924 + protein coding gene solute carrier family 35, member E2
Tssr44955 4 155601791 to 155601841 50 - TSS region transcription start site region 44955
Tssr40684 4 155601854 to 155601940 86 + TSS region transcription start site region 40684
Gm16023 4 155608300 to 155624755 16455 - lncRNA gene predicted gene 16023
Tssr40685 4 155609514 to 155609547 33 + TSS region transcription start site region 40685
Gm10563 4 155614413 to 155645408 30995 - protein coding gene predicted gene 10563
Gm16024 4 155616409 to 155616787 378 + antisense lncRNA gene predicted gene 16024
Tssr44956 4 155624285 to 155624321 36 - TSS region transcription start site region 44956
Tssr1400 4 155624354 to 155624367 13 - TSS region transcription start site region 1400
Cpgi15474 4 155624392 to 155625300 908 CpG island CpG island 15474
Tssr40686 4 155624499 to 155624514 15 + TSS region transcription start site region 40686
Tssr44957 4 155624560 to 155624574 14 - TSS region transcription start site region 44957
Tssr44958 4 155624577 to 155624634 57 - TSS region transcription start site region 44958
Tssr44959 4 155624733 to 155624773 40 - TSS region transcription start site region 44959
Cdk11b 4 155624852 to 155649935 25083 + protein coding gene cyclin-dependent kinase 11B
Tssr40687 4 155624853 to 155624929 76 + TSS region transcription start site region 40687
Tssr40688 4 155624931 to 155624940 9 + TSS region transcription start site region 40688
Tssr40689 4 155624967 to 155624977 10 + TSS region transcription start site region 40689
Tssr40690 4 155625197 to 155625216 19 + TSS region transcription start site region 40690
Tssr1401 4 155625230 to 155625240 10 + TSS region transcription start site region 1401
Tssr40691 4 155625522 to 155625555 33 + TSS region transcription start site region 40691
Tssr40692 4 155626808 to 155626825 17 + TSS region transcription start site region 40692
Tssr40693 4 155630521 to 155630533 12 + TSS region transcription start site region 40693
Tssr1402 4 155630548 to 155630559 11 + TSS region transcription start site region 1402
Tssr40694 4 155638511 to 155638523 12 + TSS region transcription start site region 40694
Tssr40695 4 155638543 to 155638555 12 + TSS region transcription start site region 40695
Tssr40696 4 155638558 to 155638574 16 + TSS region transcription start site region 40696
Tssr40697 4 155638578 to 155638591 13 + TSS region transcription start site region 40697
Mmp23 4 155650655 to 155653384 2729 - protein coding gene matrix metallopeptidase 23
Cpgi15475 4 155652172 to 155655602 3430 CpG island CpG island 15475
Tssr44960 4 155653184 to 155653236 52 - TSS region transcription start site region 44960
Mib2 4 155654677 to 155669198 14521 - protein coding gene mindbomb E3 ubiquitin protein ligase 2
Tssr44961 4 155655005 to 155655024 19 - TSS region transcription start site region 44961
Cpgi15476 4 155668584 to 155669644 1060 CpG island CpG island 15476
Tssr44962 4 155669119 to 155669163 44 - TSS region transcription start site region 44962
Tssr44963 4 155669171 to 155669231 60 - TSS region transcription start site region 44963
Tssr40698 4 155669666 to 155669674 8 + TSS region transcription start site region 40698
Tssr40699 4 155670479 to 155670502 23 + TSS region transcription start site region 40699
Cpgi15477 4 155693877 to 155695431 1554 CpG island CpG island 15477
Tssr40700 4 155694311 to 155694375 64 + TSS region transcription start site region 40700
Fndc10 4 155694342 to 155696481 2139 + protein coding gene fibronectin type III domain containing 10
Tssr40701 4 155694455 to 155694523 68 + TSS region transcription start site region 40701
Tssr44964 4 155697002 to 155697018 16 - TSS region transcription start site region 44964
Tssr44965 4 155697029 to 155697042 13 - TSS region transcription start site region 44965
Cpgi15478 4 155704674 to 155705909 1235 CpG island CpG island 15478
Tssr40702 4 155704789 to 155704834 45 + TSS region transcription start site region 40702
Ssu72 4 155704805 to 155733879 29074 + protein coding gene Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
Tssr40703 4 155704878 to 155704887 9 + TSS region transcription start site region 40703
Tssr44966 4 155704960 to 155704980 20 - TSS region transcription start site region 44966
Tssr40704 4 155705046 to 155705057 11 + TSS region transcription start site region 40704
Tssr40705 4 155705088 to 155705183 95 + TSS region transcription start site region 40705
Tssr40706 4 155705272 to 155705320 48 + TSS region transcription start site region 40706
Tssr40707 4 155705322 to 155705349 27 + TSS region transcription start site region 40707
Tssr40708 4 155705354 to 155705372 18 + TSS region transcription start site region 40708
Tssr40709 4 155718269 to 155718281 12 + TSS region transcription start site region 40709
Gm22573 4 155720040 to 155720141 101 - snRNA gene predicted gene, 22573
Tssr40710 4 155721731 to 155721734 3 + TSS region transcription start site region 40710
Tssr40711 4 155728342 to 155728352 10 + TSS region transcription start site region 40711
1500002C15Rik 4 155732545 to 155734727 2182 - antisense lncRNA gene RIKEN cDNA 1500002C15 gene
Cpgi15479 4 155734190 to 155735909 1719 CpG island CpG island 15479
Tmem240 4 155734800 to 155740564 5764 + protein coding gene transmembrane protein 240
Tssr40712 4 155734825 to 155734846 21 + TSS region transcription start site region 40712
Tssr44967 4 155735976 to 155735987 11 - TSS region transcription start site region 44967
Cpgi15480 4 155739486 to 155740117 631 CpG island CpG island 15480
Atad3a 4 155740641 to 155761093 20452 - protein coding gene ATPase family, AAA domain containing 3A
Cpgi15481 4 155760448 to 155761304 856 CpG island CpG island 15481
Tssr44968 4 155761042 to 155761109 67 - TSS region transcription start site region 44968
Tssr40713 4 155761148 to 155761166 18 + TSS region transcription start site region 40713
Atad3aos 4 155761192 to 155763560 2368 + antisense lncRNA gene ATPase family, AAA domain containing 3A, opposite strand
Tssr40714 4 155761202 to 155761235 33 + TSS region transcription start site region 40714
Tssr40715 4 155761335 to 155761339 4 + TSS region transcription start site region 40715
Cpgi15482 4 155761567 to 155761875 308 CpG island CpG island 15482
Vwa1 4 155768495 to 155774561 6066 - protein coding gene von Willebrand factor A domain containing 1
Cpgi15483 4 155769885 to 155771061 1176 CpG island CpG island 15483
Gm26840 4 155769969 to 155776161 6192 + lincRNA gene predicted gene, 26840
Cpgi15484 4 155774234 to 155774826 592 CpG island CpG island 15484
Tssr44969 4 155774503 to 155774555 52 - TSS region transcription start site region 44969
Tssr44970 4 155774563 to 155774574 11 - TSS region transcription start site region 44970
Tmem88b 4 155781591 to 155785874 4283 - protein coding gene transmembrane protein 88B
Cpgi15485 4 155784015 to 155784752 737 CpG island CpG island 15485
Tssr44971 4 155784022 to 155784030 8 - TSS region transcription start site region 44971
Tssr44972 4 155784898 to 155784933 35 - TSS region transcription start site region 44972