Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:154639392-155089400

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(4D4Mit190-D4Mit51)2Aam 4 150704851 to 155046016 4341165 chromosomal deletion deletion, Chr 4, Alea A Mills 2
Dp(4D4Mit190-D4Mit51)1Aam 4 150704851 to 155046016 4341165 chromosomal duplication duplication, Chr 4, Alea A Mills 1
Prdm16os 4 154637576 to 154644724 7148 + antisense lncRNA gene Prdm16 opposite strand transcript
Cpgi15445 4 154641207 to 154641758 551 CpG island CpG island 15445
Gm27202 4 154645083 to 154645701 618 - lincRNA gene predicted gene 27202
Gm13110 4 154645754 to 154655318 9564 - lncRNA gene predicted gene 13110
Actrt2 4 154666433 to 154667867 1434 - protein coding gene actin-related protein T2
Tssr44885 4 154667689 to 154667706 17 - TSS region transcription start site region 44885
Tssr44886 4 154667863 to 154667868 5 - TSS region transcription start site region 44886
1700062A02Rik 4 154668018 to 154668196 178 unclassified gene RIKEN cDNA 1700062A02 gene
Tssr1395 4 154754914 to 154754916 2 + TSS region transcription start site region 1395
Cpgi15446 4 154802094 to 154802597 503 CpG island CpG island 15446
Tssr40594 4 154810496 to 154810503 7 + TSS region transcription start site region 40594
Tssr40595 4 154833977 to 154834014 37 + TSS region transcription start site region 40595
Ttc34 4 154837459 to 154867127 29668 + protein coding gene tetratricopeptide repeat domain 34
Cpgi15447 4 154855333 to 154856751 1418 CpG island CpG island 15447
Gm13112 4 154862834 to 154868053 5219 - antisense lncRNA gene predicted gene 13112
Tssr40596 4 154864392 to 154864400 8 + TSS region transcription start site region 40596
Tssr40597 4 154864410 to 154864425 15 + TSS region transcription start site region 40597
Tssr40598 4 154864502 to 154864507 5 + TSS region transcription start site region 40598
Tssr40599 4 154869564 to 154869566 2 + TSS region transcription start site region 40599
Mmel1 4 154869585 to 154895528 25943 + protein coding gene membrane metallo-endopeptidase-like 1
Tssr40600 4 154869588 to 154869634 46 + TSS region transcription start site region 40600
Tssr40601 4 154869642 to 154869658 16 + TSS region transcription start site region 40601
Tssr44887 4 154872025 to 154872046 21 - TSS region transcription start site region 44887
Cpgi15448 4 154877798 to 154878100 302 CpG island CpG island 15448
Tssr40602 4 154878080 to 154878120 40 + TSS region transcription start site region 40602
Prxl2b 4 154896430 to 154899043 2613 - protein coding gene peroxiredoxin like 2B
Cpgi15449 4 154898399 to 154899456 1057 CpG island CpG island 15449
Tssr44888 4 154899019 to 154899030 11 - TSS region transcription start site region 44888
Tssr44889 4 154899037 to 154899073 36 - TSS region transcription start site region 44889
Tssr44890 4 154899077 to 154899097 20 - TSS region transcription start site region 44890
Tssr1396 4 154900306 to 154900309 3 + TSS region transcription start site region 1396
Cpgi15450 4 154908048 to 154908254 206 CpG island CpG island 15450
Gm42362 4 154915131 to 154919886 4755 - lncRNA gene predicted gene, 42362
Tssr44891 4 154918970 to 154919013 43 - TSS region transcription start site region 44891
Tssr44892 4 154919073 to 154919088 15 - TSS region transcription start site region 44892
Tssr44893 4 154919913 to 154919948 35 - TSS region transcription start site region 44893
Tssr44894 4 154920057 to 154920069 12 - TSS region transcription start site region 44894
Tssr44895 4 154921468 to 154921482 14 - TSS region transcription start site region 44895
Tssr44896 4 154921499 to 154921511 12 - TSS region transcription start site region 44896
Tssr44897 4 154921559 to 154921601 42 - TSS region transcription start site region 44897
Tssr44898 4 154921677 to 154921693 16 - TSS region transcription start site region 44898
Tssr44899 4 154921766 to 154921778 12 - TSS region transcription start site region 44899
Tnfrsf14 4 154921933 to 154928563 6630 - protein coding gene tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)
Tssr44900 4 154924411 to 154924414 3 - TSS region transcription start site region 44900
Tssr44901 4 154925259 to 154925263 4 - TSS region transcription start site region 44901
Tssr44902 4 154928083 to 154928094 11 - TSS region transcription start site region 44902
Tssr44903 4 154928103 to 154928147 44 - TSS region transcription start site region 44903
Tssr44904 4 154928156 to 154928174 18 - TSS region transcription start site region 44904
Tssr44905 4 154928187 to 154928205 18 - TSS region transcription start site region 44905
Tssr40603 4 154928228 to 154928274 46 + TSS region transcription start site region 40603
Tssr44906 4 154928407 to 154928414 7 - TSS region transcription start site region 44906
Tssr44907 4 154928545 to 154928571 26 - TSS region transcription start site region 44907
Tssr44908 4 154928585 to 154928600 15 - TSS region transcription start site region 44908
Tssr40604 4 154935945 to 154935992 47 + TSS region transcription start site region 40604
Tssr40605 4 154936140 to 154936150 10 + TSS region transcription start site region 40605
Tssr40606 4 154936234 to 154936243 9 + TSS region transcription start site region 40606
Tssr44909 4 154936578 to 154936599 21 - TSS region transcription start site region 44909
Tssr44910 4 154936603 to 154936610 7 - TSS region transcription start site region 44910
Tssr40607 4 154936987 to 154937007 20 + TSS region transcription start site region 40607
Tssr40608 4 154937150 to 154937168 18 + TSS region transcription start site region 40608
Tssr40609 4 154937185 to 154937199 14 + TSS region transcription start site region 40609
Tssr40610 4 154942964 to 154942978 14 + TSS region transcription start site region 40610
Tssr40611 4 154943003 to 154943019 16 + TSS region transcription start site region 40611
Tssr44911 4 154944125 to 154944135 10 - TSS region transcription start site region 44911
Tssr44912 4 154944177 to 154944188 11 - TSS region transcription start site region 44912
Tssr44913 4 154946443 to 154946446 3 - TSS region transcription start site region 44913
Cpgi15451 4 154952636 to 154953125 489 CpG island CpG island 15451
Cpgi15452 4 154960070 to 154961889 1819 CpG island CpG island 15452
Gm20421 4 154960770 to 154961678 908 - unclassified non-coding RNA gene predicted gene 20421
Tssr40612 4 154960915 to 154960930 15 + TSS region transcription start site region 40612
Hes5 4 154960923 to 154962371 1448 + protein coding gene hes family bHLH transcription factor 5
Tssr40613 4 154961000 to 154961017 17 + TSS region transcription start site region 40613
Tssr40614 4 154961177 to 154961189 12 + TSS region transcription start site region 40614
Tssr40615 4 154961398 to 154961418 20 + TSS region transcription start site region 40615
Tssr40616 4 154961463 to 154961474 11 + TSS region transcription start site region 40616
Cpgi15453 4 154963689 to 154965131 1442 CpG island CpG island 15453
Tssr40617 4 154964117 to 154964147 30 + TSS region transcription start site region 40617
Pank4 4 154964123 to 154980938 16815 + protein coding gene pantothenate kinase 4
Gm42363 4 154964284 to 154965313 1029 + lncRNA gene predicted gene, 42363
Tssr44914 4 154964343 to 154964361 18 - TSS region transcription start site region 44914
Tssr40618 4 154965072 to 154965101 29 + TSS region transcription start site region 40618
Plch2 4 154983115 to 155056784 73669 - protein coding gene phospholipase C, eta 2
Cpgi15454 4 154983761 to 154984304 543 CpG island CpG island 15454
Cpgi15455 4 154986106 to 154986286 180 CpG island CpG island 15455
D4Mit256.2 4 154990377 to 154990489 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 256.2
D4Mit256 4 154990439 to 154990571 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 256
Tssr44915 4 155011006 to 155011026 20 - TSS region transcription start site region 44915
Tssr44916 4 155019383 to 155019391 8 - TSS region transcription start site region 44916
Tssr44917 4 155019397 to 155019398 1 - TSS region transcription start site region 44917
Tssr44918 4 155019399 to 155019437 38 - TSS region transcription start site region 44918
Gm10564 4 155042046 to 155045422 3376 + antisense lncRNA gene predicted gene 10564
Cpgi15456 4 155042358 to 155043938 1580 CpG island CpG island 15456
Tssr44919 4 155043143 to 155043172 29 - TSS region transcription start site region 44919
D4Mit51 4 155045894 to 155046016 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 51
Tssr44920 4 155056784 to 155056827 43 - TSS region transcription start site region 44920
Tssr44921 4 155064013 to 155064045 32 - TSS region transcription start site region 44921
Tssr44922 4 155064046 to 155064066 20 - TSS region transcription start site region 44922
Cpgi15457 4 155066572 to 155067539 967 CpG island CpG island 15457
Tssr40619 4 155067028 to 155067064 36 + TSS region transcription start site region 40619
Pex10 4 155067030 to 155072406 5376 + protein coding gene peroxisomal biogenesis factor 10
Rer1 4 155074109 to 155086381 12272 - protein coding gene retention in endoplasmic reticulum sorting receptor 1
Tssr44923 4 155080836 to 155080879 43 - TSS region transcription start site region 44923
Cpgi15458 4 155085703 to 155087149 1446 CpG island CpG island 15458
Tssr44924 4 155086248 to 155086265 17 - TSS region transcription start site region 44924
Tssr44925 4 155086271 to 155086379 108 - TSS region transcription start site region 44925
Morn1 4 155086577 to 155145505 58928 + protein coding gene MORN repeat containing 1
Tssr40620 4 155086578 to 155086610 32 + TSS region transcription start site region 40620