Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:154452348-156672413

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567 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(4D4Mit190-D4Mit51)2Aam 4 150704851 to 155046016 4341165 chromosomal deletion deletion, Chr 4, Alea A Mills 2
Dp(4D4Mit190-D4Mit51)1Aam 4 150704851 to 155046016 4341165 chromosomal duplication duplication, Chr 4, Alea A Mills 1
Prdm16 4 154316125 to 154636873 320748 - protein coding gene PR domain containing 16
Cpgi15441 4 154464526 to 154464709 183 CpG island CpG island 15441
Tssr44876 4 154471278 to 154471310 32 - TSS region transcription start site region 44876
Cpgi15442 4 154506886 to 154507085 199 CpG island CpG island 15442
Tssr40586 4 154506909 to 154506918 9 + TSS region transcription start site region 40586
Tssr40587 4 154506933 to 154506951 18 + TSS region transcription start site region 40587
Tssr40588 4 154531269 to 154531270 1 + TSS region transcription start site region 40588
Gm13133 4 154550282 to 154557645 7363 + antisense lncRNA gene predicted gene 13133
Gm13134 4 154601197 to 154604202 3005 + antisense lncRNA gene predicted gene 13134
Tssr40589 4 154601299 to 154601302 3 + TSS region transcription start site region 40589
Cpgi15443 4 154604096 to 154604334 238 CpG island CpG island 15443
Tssr40590 4 154619161 to 154619179 18 + TSS region transcription start site region 40590
5930403L14Rik 4 154630691 to 154636367 5676 - lncRNA gene RIKEN cDNA 5930403L14 gene
Cpgi15444 4 154634632 to 154638230 3598 CpG island CpG island 15444
Tssr44877 4 154636119 to 154636135 16 - TSS region transcription start site region 44877
Tssr44878 4 154636204 to 154636215 11 - TSS region transcription start site region 44878
Tssr44879 4 154636225 to 154636238 13 - TSS region transcription start site region 44879
Tssr44880 4 154636300 to 154636357 57 - TSS region transcription start site region 44880
Tssr44881 4 154636773 to 154636780 7 - TSS region transcription start site region 44881
Tssr44882 4 154636809 to 154636822 13 - TSS region transcription start site region 44882
Tssr44883 4 154636831 to 154636853 22 - TSS region transcription start site region 44883
Tssr1394 4 154636910 to 154636934 24 + TSS region transcription start site region 1394
Tssr44884 4 154636963 to 154636986 23 - TSS region transcription start site region 44884
Tssr40591 4 154637141 to 154637148 7 + TSS region transcription start site region 40591
Tssr40592 4 154637546 to 154637564 18 + TSS region transcription start site region 40592
Tssr40593 4 154637569 to 154637587 18 + TSS region transcription start site region 40593
Prdm16os 4 154637576 to 154644724 7148 + antisense lncRNA gene Prdm16 opposite strand transcript
Cpgi15445 4 154641207 to 154641758 551 CpG island CpG island 15445
Gm27202 4 154645083 to 154645701 618 - lincRNA gene predicted gene 27202
Gm13110 4 154645754 to 154655318 9564 - lncRNA gene predicted gene 13110
Actrt2 4 154666433 to 154667867 1434 - protein coding gene actin-related protein T2
Tssr44885 4 154667689 to 154667706 17 - TSS region transcription start site region 44885
Tssr44886 4 154667863 to 154667868 5 - TSS region transcription start site region 44886
1700062A02Rik 4 154668018 to 154668196 178 unclassified gene RIKEN cDNA 1700062A02 gene
Tssr1395 4 154754914 to 154754916 2 + TSS region transcription start site region 1395
Cpgi15446 4 154802094 to 154802597 503 CpG island CpG island 15446
Tssr40594 4 154810496 to 154810503 7 + TSS region transcription start site region 40594
Tssr40595 4 154833977 to 154834014 37 + TSS region transcription start site region 40595
Ttc34 4 154837459 to 154867127 29668 + protein coding gene tetratricopeptide repeat domain 34
Cpgi15447 4 154855333 to 154856751 1418 CpG island CpG island 15447
Gm13112 4 154862834 to 154868053 5219 - antisense lncRNA gene predicted gene 13112
Tssr40596 4 154864392 to 154864400 8 + TSS region transcription start site region 40596
Tssr40597 4 154864410 to 154864425 15 + TSS region transcription start site region 40597
Tssr40598 4 154864502 to 154864507 5 + TSS region transcription start site region 40598
Tssr40599 4 154869564 to 154869566 2 + TSS region transcription start site region 40599
Mmel1 4 154869585 to 154895528 25943 + protein coding gene membrane metallo-endopeptidase-like 1
Tssr40600 4 154869588 to 154869634 46 + TSS region transcription start site region 40600
Tssr40601 4 154869642 to 154869658 16 + TSS region transcription start site region 40601
Tssr44887 4 154872025 to 154872046 21 - TSS region transcription start site region 44887
Cpgi15448 4 154877798 to 154878100 302 CpG island CpG island 15448
Tssr40602 4 154878080 to 154878120 40 + TSS region transcription start site region 40602
Prxl2b 4 154896430 to 154899043 2613 - protein coding gene peroxiredoxin like 2B
Cpgi15449 4 154898399 to 154899456 1057 CpG island CpG island 15449
Tssr44888 4 154899019 to 154899030 11 - TSS region transcription start site region 44888
Tssr44889 4 154899037 to 154899073 36 - TSS region transcription start site region 44889
Tssr44890 4 154899077 to 154899097 20 - TSS region transcription start site region 44890
Tssr1396 4 154900306 to 154900309 3 + TSS region transcription start site region 1396
Cpgi15450 4 154908048 to 154908254 206 CpG island CpG island 15450
Gm42362 4 154915131 to 154919886 4755 - lncRNA gene predicted gene, 42362
Tssr44891 4 154918970 to 154919013 43 - TSS region transcription start site region 44891
Tssr44892 4 154919073 to 154919088 15 - TSS region transcription start site region 44892
Tssr44893 4 154919913 to 154919948 35 - TSS region transcription start site region 44893
Tssr44894 4 154920057 to 154920069 12 - TSS region transcription start site region 44894
Tssr44895 4 154921468 to 154921482 14 - TSS region transcription start site region 44895
Tssr44896 4 154921499 to 154921511 12 - TSS region transcription start site region 44896
Tssr44897 4 154921559 to 154921601 42 - TSS region transcription start site region 44897
Tssr44898 4 154921677 to 154921693 16 - TSS region transcription start site region 44898
Tssr44899 4 154921766 to 154921778 12 - TSS region transcription start site region 44899
Tnfrsf14 4 154921933 to 154928563 6630 - protein coding gene tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)
Tssr44900 4 154924411 to 154924414 3 - TSS region transcription start site region 44900
Tssr44901 4 154925259 to 154925263 4 - TSS region transcription start site region 44901
Tssr44902 4 154928083 to 154928094 11 - TSS region transcription start site region 44902
Tssr44903 4 154928103 to 154928147 44 - TSS region transcription start site region 44903
Tssr44904 4 154928156 to 154928174 18 - TSS region transcription start site region 44904
Tssr44905 4 154928187 to 154928205 18 - TSS region transcription start site region 44905
Tssr40603 4 154928228 to 154928274 46 + TSS region transcription start site region 40603
Tssr44906 4 154928407 to 154928414 7 - TSS region transcription start site region 44906
Tssr44907 4 154928545 to 154928571 26 - TSS region transcription start site region 44907
Tssr44908 4 154928585 to 154928600 15 - TSS region transcription start site region 44908
Tssr40604 4 154935945 to 154935992 47 + TSS region transcription start site region 40604
Tssr40605 4 154936140 to 154936150 10 + TSS region transcription start site region 40605
Tssr40606 4 154936234 to 154936243 9 + TSS region transcription start site region 40606
Tssr44909 4 154936578 to 154936599 21 - TSS region transcription start site region 44909
Tssr44910 4 154936603 to 154936610 7 - TSS region transcription start site region 44910
Tssr40607 4 154936987 to 154937007 20 + TSS region transcription start site region 40607
Tssr40608 4 154937150 to 154937168 18 + TSS region transcription start site region 40608
Tssr40609 4 154937185 to 154937199 14 + TSS region transcription start site region 40609
Tssr40610 4 154942964 to 154942978 14 + TSS region transcription start site region 40610
Tssr40611 4 154943003 to 154943019 16 + TSS region transcription start site region 40611
Tssr44911 4 154944125 to 154944135 10 - TSS region transcription start site region 44911
Tssr44912 4 154944177 to 154944188 11 - TSS region transcription start site region 44912
Tssr44913 4 154946443 to 154946446 3 - TSS region transcription start site region 44913
Cpgi15451 4 154952636 to 154953125 489 CpG island CpG island 15451
Cpgi15452 4 154960070 to 154961889 1819 CpG island CpG island 15452
Gm20421 4 154960770 to 154961678 908 - unclassified non-coding RNA gene predicted gene 20421
Tssr40612 4 154960915 to 154960930 15 + TSS region transcription start site region 40612
Hes5 4 154960923 to 154962371 1448 + protein coding gene hes family bHLH transcription factor 5
Tssr40613 4 154961000 to 154961017 17 + TSS region transcription start site region 40613
Tssr40614 4 154961177 to 154961189 12 + TSS region transcription start site region 40614
Tssr40615 4 154961398 to 154961418 20 + TSS region transcription start site region 40615
Tssr40616 4 154961463 to 154961474 11 + TSS region transcription start site region 40616
Cpgi15453 4 154963689 to 154965131 1442 CpG island CpG island 15453
Tssr40617 4 154964117 to 154964147 30 + TSS region transcription start site region 40617
Pank4 4 154964123 to 154980938 16815 + protein coding gene pantothenate kinase 4
Gm42363 4 154964284 to 154965313 1029 + lncRNA gene predicted gene, 42363
Tssr44914 4 154964343 to 154964361 18 - TSS region transcription start site region 44914
Tssr40618 4 154965072 to 154965101 29 + TSS region transcription start site region 40618
Plch2 4 154983115 to 155056784 73669 - protein coding gene phospholipase C, eta 2
Cpgi15454 4 154983761 to 154984304 543 CpG island CpG island 15454
Cpgi15455 4 154986106 to 154986286 180 CpG island CpG island 15455
D4Mit256.2 4 154990377 to 154990489 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 256.2
D4Mit256 4 154990439 to 154990571 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 256
Tssr44915 4 155011006 to 155011026 20 - TSS region transcription start site region 44915
Tssr44916 4 155019383 to 155019391 8 - TSS region transcription start site region 44916
Tssr44917 4 155019397 to 155019398 1 - TSS region transcription start site region 44917
Tssr44918 4 155019399 to 155019437 38 - TSS region transcription start site region 44918
Gm10564 4 155042046 to 155045422 3376 + antisense lncRNA gene predicted gene 10564
Cpgi15456 4 155042358 to 155043938 1580 CpG island CpG island 15456
Tssr44919 4 155043143 to 155043172 29 - TSS region transcription start site region 44919
D4Mit51 4 155045894 to 155046016 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 51
Tssr44920 4 155056784 to 155056827 43 - TSS region transcription start site region 44920
Tssr44921 4 155064013 to 155064045 32 - TSS region transcription start site region 44921
Tssr44922 4 155064046 to 155064066 20 - TSS region transcription start site region 44922
Cpgi15457 4 155066572 to 155067539 967 CpG island CpG island 15457
Tssr40619 4 155067028 to 155067064 36 + TSS region transcription start site region 40619
Pex10 4 155067030 to 155072406 5376 + protein coding gene peroxisomal biogenesis factor 10
Rer1 4 155074109 to 155086381 12272 - protein coding gene retention in endoplasmic reticulum sorting receptor 1
Tssr44923 4 155080836 to 155080879 43 - TSS region transcription start site region 44923
Cpgi15458 4 155085703 to 155087149 1446 CpG island CpG island 15458
Tssr44924 4 155086248 to 155086265 17 - TSS region transcription start site region 44924
Tssr44925 4 155086271 to 155086379 108 - TSS region transcription start site region 44925
Morn1 4 155086577 to 155145505 58928 + protein coding gene MORN repeat containing 1
Tssr40620 4 155086578 to 155086610 32 + TSS region transcription start site region 40620
Cpgi15459 4 155093000 to 155093211 211 CpG island CpG island 15459
Tssr40621 4 155095889 to 155095898 9 + TSS region transcription start site region 40621
Tssr1397 4 155111289 to 155111292 3 + TSS region transcription start site region 1397
Cpgi15460 4 155150219 to 155151570 1351 CpG island CpG island 15460
Ski 4 155154075 to 155222592 68517 - protein coding gene ski sarcoma viral oncogene homolog (avian)
Tssr44926 4 155154425 to 155154438 13 - TSS region transcription start site region 44926
Tssr44927 4 155154789 to 155154843 54 - TSS region transcription start site region 44927
Tssr44928 4 155154879 to 155154953 74 - TSS region transcription start site region 44928
Cpgi15461 4 155157965 to 155158301 336 CpG island CpG island 15461
Tssr44929 4 155197570 to 155197575 5 - TSS region transcription start site region 44929
Tssr44930 4 155200757 to 155200771 14 - TSS region transcription start site region 44930
Cpgi15462 4 155214957 to 155215116 159 CpG island CpG island 15462
Tssr44931 4 155217205 to 155217212 7 - TSS region transcription start site region 44931
Tssr40622 4 155217532 to 155217562 30 + TSS region transcription start site region 40622
Cpgi15463 4 155221445 to 155223903 2458 CpG island CpG island 15463
Tssr40623 4 155221677 to 155221681 4 + TSS region transcription start site region 40623
Tssr44932 4 155223068 to 155223086 18 - TSS region transcription start site region 44932
Tssr44933 4 155223206 to 155223218 12 - TSS region transcription start site region 44933
Tssr44934 4 155223233 to 155223249 16 - TSS region transcription start site region 44934
Gm42364 4 155225440 to 155228645 3205 - lncRNA gene predicted gene, 42364
Tssr40624 4 155234536 to 155234547 11 + TSS region transcription start site region 40624
Tssr40625 4 155235486 to 155235522 36 + TSS region transcription start site region 40625
Gm33187 4 155240265 to 155243884 3619 + lncRNA gene predicted gene, 33187
Tssr40626 4 155246860 to 155246872 12 + TSS region transcription start site region 40626
Cpgi15464 4 155249637 to 155250815 1178 CpG island CpG island 15464
Faap20 4 155249802 to 155256687 6885 + protein coding gene Fanconi anemia core complex associated protein 20
Tssr40627 4 155249960 to 155250010 50 + TSS region transcription start site region 40627
Tssr40628 4 155250088 to 155250123 35 + TSS region transcription start site region 40628
Tssr40629 4 155250189 to 155250201 12 + TSS region transcription start site region 40629
Tssr40630 4 155250283 to 155250294 11 + TSS region transcription start site region 40630
Prkcz 4 155260129 to 155361361 101232 - protein coding gene protein kinase C, zeta
Tssr44935 4 155328646 to 155328690 44 - TSS region transcription start site region 44935
Gm27200 4 155343683 to 155344465 782 + antisense lncRNA gene predicted gene 27200
Cpgi15465 4 155344595 to 155345911 1316 CpG island CpG island 15465
Tssr44936 4 155345491 to 155345494 3 - TSS region transcription start site region 44936
Tssr44937 4 155345640 to 155345649 9 - TSS region transcription start site region 44937
Tssr44938 4 155345678 to 155345689 11 - TSS region transcription start site region 44938
Tssr44939 4 155345696 to 155345799 103 - TSS region transcription start site region 44939
Tssr1398 4 155352714 to 155352715 1 + TSS region transcription start site region 1398
Cpgi15466 4 155360887 to 155362133 1246 CpG island CpG island 15466
Tssr44940 4 155361322 to 155361346 24 - TSS region transcription start site region 44940
Tssr44941 4 155361356 to 155361433 77 - TSS region transcription start site region 44941
Tssr40631 4 155361667 to 155361678 11 + TSS region transcription start site region 40631
Gabrd 4 155384979 to 155398069 13090 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit delta
Tssr40632 4 155397039 to 155397051 12 + TSS region transcription start site region 40632
Tssr40633 4 155397055 to 155397069 14 + TSS region transcription start site region 40633
Tssr40634 4 155397083 to 155397090 7 + TSS region transcription start site region 40634
Cpgi15467 4 155397335 to 155398527 1192 CpG island CpG island 15467
Tssr44942 4 155397981 to 155397997 16 - TSS region transcription start site region 44942
Tssr44943 4 155398011 to 155398028 17 - TSS region transcription start site region 44943
Tssr44944 4 155398037 to 155398055 18 - TSS region transcription start site region 44944
Tssr44945 4 155398059 to 155398080 21 - TSS region transcription start site region 44945
Tssr40635 4 155398165 to 155398197 32 + TSS region transcription start site region 40635
5830444B04Rik 4 155400969 to 155421704 20735 - lncRNA gene RIKEN cDNA 5830444B04 gene
Cpgi15468 4 155408983 to 155409723 740 CpG island CpG island 15468
Cfap74 4 155409190 to 155466823 57633 + protein coding gene cilia and flagella associated protein 74
Tssr40636 4 155409201 to 155409266 65 + TSS region transcription start site region 40636
Tssr40637 4 155409270 to 155409280 10 + TSS region transcription start site region 40637
Tssr40638 4 155409286 to 155409289 3 + TSS region transcription start site region 40638
Tssr44946 4 155411313 to 155411318 5 - TSS region transcription start site region 44946
9630009N12Rik 4 155411621 to 155412151 530 unclassified gene RIKEN cDNA 9630009N12 gene
Tssr44947 4 155414766 to 155414778 12 - TSS region transcription start site region 44947
Tssr44948 4 155414781 to 155414804 23 - TSS region transcription start site region 44948
Tssr44949 4 155414879 to 155414884 5 - TSS region transcription start site region 44949
Tssr40639 4 155414922 to 155414951 29 + TSS region transcription start site region 40639