Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:154294526-154634709

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgef16 4 154278469 to 154300051 21582 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 16
Cpgi15437 4 154299421 to 154300440 1019 CpG island CpG island 15437
Tssr40585 4 154299638 to 154299650 12 + TSS region transcription start site region 40585
Tssr44868 4 154299851 to 154299919 68 - TSS region transcription start site region 44868
Tssr44869 4 154300007 to 154300028 21 - TSS region transcription start site region 44869
Tssr44870 4 154300029 to 154300079 50 - TSS region transcription start site region 44870
Prdm16 4 154316125 to 154636873 320748 - protein coding gene PR domain containing 16
Tssr44871 4 154316315 to 154316318 3 - TSS region transcription start site region 44871
Cpgi15438 4 154328465 to 154328905 440 CpG island CpG island 15438
Cpgi15439 4 154334629 to 154335318 689 CpG island CpG island 15439
Tssr44872 4 154334760 to 154334763 3 - TSS region transcription start site region 44872
Tssr44873 4 154334783 to 154334795 12 - TSS region transcription start site region 44873
B230104I21Rik 4 154336127 to 154349918 13791 + unclassified gene RIKEN cDNA B230104I21 gene
Tssr44874 4 154359742 to 154359759 17 - TSS region transcription start site region 44874
Tssr44875 4 154361344 to 154361347 3 - TSS region transcription start site region 44875
D4Mit209 4 154415509 to 154415630 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 209
Cpgi15440 4 154438395 to 154438933 538 CpG island CpG island 15440
Cpgi15441 4 154464526 to 154464709 183 CpG island CpG island 15441
Tssr44876 4 154471278 to 154471310 32 - TSS region transcription start site region 44876
Cpgi15442 4 154506886 to 154507085 199 CpG island CpG island 15442
Tssr40586 4 154506909 to 154506918 9 + TSS region transcription start site region 40586
Tssr40587 4 154506933 to 154506951 18 + TSS region transcription start site region 40587
Tssr40588 4 154531269 to 154531270 1 + TSS region transcription start site region 40588
Gm13133 4 154550282 to 154557645 7363 + antisense lncRNA gene predicted gene 13133
Gm13134 4 154601197 to 154604202 3005 + antisense lncRNA gene predicted gene 13134
Tssr40589 4 154601299 to 154601302 3 + TSS region transcription start site region 40589
Cpgi15443 4 154604096 to 154604334 238 CpG island CpG island 15443
Tssr40590 4 154619161 to 154619179 18 + TSS region transcription start site region 40590
5930403L14Rik 4 154630691 to 154636367 5676 - lncRNA gene RIKEN cDNA 5930403L14 gene
Cpgi15444 4 154634632 to 154638230 3598 CpG island CpG island 15444