Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:154285282-154822645

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgef16 4 154278469 to 154300051 21582 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 16
Tssr44867 4 154289050 to 154289053 3 - TSS region transcription start site region 44867
Cpgi15437 4 154299421 to 154300440 1019 CpG island CpG island 15437
Tssr40585 4 154299638 to 154299650 12 + TSS region transcription start site region 40585
Tssr44868 4 154299851 to 154299919 68 - TSS region transcription start site region 44868
Tssr44869 4 154300007 to 154300028 21 - TSS region transcription start site region 44869
Tssr44870 4 154300029 to 154300079 50 - TSS region transcription start site region 44870
Prdm16 4 154316125 to 154636873 320748 - protein coding gene PR domain containing 16
Tssr44871 4 154316315 to 154316318 3 - TSS region transcription start site region 44871
Cpgi15438 4 154328465 to 154328905 440 CpG island CpG island 15438
Cpgi15439 4 154334629 to 154335318 689 CpG island CpG island 15439
Tssr44872 4 154334760 to 154334763 3 - TSS region transcription start site region 44872
Tssr44873 4 154334783 to 154334795 12 - TSS region transcription start site region 44873
B230104I21Rik 4 154336127 to 154349918 13791 + unclassified gene RIKEN cDNA B230104I21 gene
Tssr44874 4 154359742 to 154359759 17 - TSS region transcription start site region 44874
Tssr44875 4 154361344 to 154361347 3 - TSS region transcription start site region 44875
D4Mit209 4 154415509 to 154415630 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 209
Cpgi15440 4 154438395 to 154438933 538 CpG island CpG island 15440
Cpgi15441 4 154464526 to 154464709 183 CpG island CpG island 15441
Tssr44876 4 154471278 to 154471310 32 - TSS region transcription start site region 44876
Cpgi15442 4 154506886 to 154507085 199 CpG island CpG island 15442
Tssr40586 4 154506909 to 154506918 9 + TSS region transcription start site region 40586
Tssr40587 4 154506933 to 154506951 18 + TSS region transcription start site region 40587
Tssr40588 4 154531269 to 154531270 1 + TSS region transcription start site region 40588
Gm13133 4 154550282 to 154557645 7363 + antisense lncRNA gene predicted gene 13133
Gm13134 4 154601197 to 154604202 3005 + antisense lncRNA gene predicted gene 13134
Tssr40589 4 154601299 to 154601302 3 + TSS region transcription start site region 40589
Cpgi15443 4 154604096 to 154604334 238 CpG island CpG island 15443
Tssr40590 4 154619161 to 154619179 18 + TSS region transcription start site region 40590
5930403L14Rik 4 154630691 to 154636367 5676 - lncRNA gene RIKEN cDNA 5930403L14 gene
Cpgi15444 4 154634632 to 154638230 3598 CpG island CpG island 15444
Tssr44877 4 154636119 to 154636135 16 - TSS region transcription start site region 44877
Tssr44878 4 154636204 to 154636215 11 - TSS region transcription start site region 44878
Tssr44879 4 154636225 to 154636238 13 - TSS region transcription start site region 44879
Tssr44880 4 154636300 to 154636357 57 - TSS region transcription start site region 44880
Tssr44881 4 154636773 to 154636780 7 - TSS region transcription start site region 44881
Tssr44882 4 154636809 to 154636822 13 - TSS region transcription start site region 44882
Tssr44883 4 154636831 to 154636853 22 - TSS region transcription start site region 44883
Tssr1394 4 154636910 to 154636934 24 + TSS region transcription start site region 1394
Tssr44884 4 154636963 to 154636986 23 - TSS region transcription start site region 44884
Tssr40591 4 154637141 to 154637148 7 + TSS region transcription start site region 40591
Tssr40592 4 154637546 to 154637564 18 + TSS region transcription start site region 40592
Tssr40593 4 154637569 to 154637587 18 + TSS region transcription start site region 40593
Prdm16os 4 154637576 to 154644724 7148 + antisense lncRNA gene Prdm16 opposite strand transcript
Cpgi15445 4 154641207 to 154641758 551 CpG island CpG island 15445
Gm27202 4 154645083 to 154645701 618 - lincRNA gene predicted gene 27202
Gm13110 4 154645754 to 154655318 9564 - lncRNA gene predicted gene 13110
Actrt2 4 154666433 to 154667867 1434 - protein coding gene actin-related protein T2
Tssr44885 4 154667689 to 154667706 17 - TSS region transcription start site region 44885
Tssr44886 4 154667863 to 154667868 5 - TSS region transcription start site region 44886
1700062A02Rik 4 154668018 to 154668196 178 unclassified gene RIKEN cDNA 1700062A02 gene
Tssr1395 4 154754914 to 154754916 2 + TSS region transcription start site region 1395
Cpgi15446 4 154802094 to 154802597 503 CpG island CpG island 15446
Tssr40594 4 154810496 to 154810503 7 + TSS region transcription start site region 40594