Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:153884470-154065669

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D4Mit313 4 153891902 to 153892097 195 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 313
Gm13115 4 153907386 to 153908666 1280 + lincRNA gene predicted gene 13115
BC039966 4 153948455 to 153950476 2021 - antisense lncRNA gene cDNA sequence BC039966
Tssr44848 4 153950490 to 153950518 28 - TSS region transcription start site region 44848
Tssr40564 4 153955960 to 153955965 5 + TSS region transcription start site region 40564
BC049688 4 153956766 to 153957172 406 unclassified non-coding RNA gene cDNA sequence BC049688
Cpgi15425 4 153956849 to 153957936 1087 CpG island CpG island 15425
Tssr44849 4 153957155 to 153957178 23 - TSS region transcription start site region 44849
Tssr40565 4 153957230 to 153957241 11 + TSS region transcription start site region 40565
A430005L14Rik 4 153957237 to 153961925 4688 + protein coding gene RIKEN cDNA A430005L14 gene
Tssr40566 4 153957247 to 153957275 28 + TSS region transcription start site region 40566
Tssr40567 4 153957284 to 153957295 11 + TSS region transcription start site region 40567
Dffb 4 153964447 to 153975121 10674 - protein coding gene DNA fragmentation factor, beta subunit
Cpgi15426 4 153974470 to 153975669 1199 CpG island CpG island 15426
Tssr44850 4 153975010 to 153975029 19 - TSS region transcription start site region 44850
Tssr44851 4 153975038 to 153975067 29 - TSS region transcription start site region 44851
Tssr40568 4 153975115 to 153975136 21 + TSS region transcription start site region 40568
Tssr40569 4 153975139 to 153975153 14 + TSS region transcription start site region 40569
Tssr40570 4 153975163 to 153975247 84 + TSS region transcription start site region 40570
Cep104 4 153975194 to 154008732 33538 + protein coding gene centrosomal protein 104
Gm42361 4 153985480 to 153988488 3008 - lncRNA gene predicted gene, 42361
Gm31566 4 153993663 to 153999261 5598 - lncRNA gene predicted gene, 31566
Cpgi15427 4 154011400 to 154013050 1650 CpG island CpG island 15427
Tssr40571 4 154011771 to 154011818 47 + TSS region transcription start site region 40571
Lrrc47 4 154011803 to 154021512 9709 + protein coding gene leucine rich repeat containing 47
Tssr40572 4 154012281 to 154012299 18 + TSS region transcription start site region 40572
Smim1 4 154020470 to 154026044 5574 - protein coding gene small integral membrane protein 1
Tssr44852 4 154023765 to 154023777 12 - TSS region transcription start site region 44852
Tssr44853 4 154023787 to 154023798 11 - TSS region transcription start site region 44853
Tssr44854 4 154025623 to 154025634 11 - TSS region transcription start site region 44854
Tssr44855 4 154025657 to 154025686 29 - TSS region transcription start site region 44855
Cpgi15428 4 154025793 to 154026122 329 CpG island CpG island 15428
Tssr44856 4 154025906 to 154025919 13 - TSS region transcription start site region 44856
Tssr44857 4 154025926 to 154025992 66 - TSS region transcription start site region 44857
Tssr40573 4 154026022 to 154026059 37 + TSS region transcription start site region 40573
Tssr44858 4 154026060 to 154026092 32 - TSS region transcription start site region 44858
Tssr40574 4 154026194 to 154026212 18 + TSS region transcription start site region 40574
Gm31672 4 154026221 to 154056559 30338 + lncRNA gene predicted gene, 31672
Ccdc27 4 154026644 to 154042677 16033 - protein coding gene coiled-coil domain containing 27
Tssr44859 4 154042660 to 154042714 54 - TSS region transcription start site region 44859
Gm13117 4 154043733 to 154044423 690 - pseudogene predicted gene 13117
Gm13114 4 154048023 to 154048128 105 - pseudogene predicted gene 13114
Trp73 4 154056253 to 154140208 83955 - protein coding gene transformation related protein 73