Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:153648469-154930051

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15424 4 153683354 to 153683725 371 CpG island CpG island 15424
Tssr40562 4 153694246 to 153694258 12 + TSS region transcription start site region 40562
Tssr1393 4 153697569 to 153697578 9 + TSS region transcription start site region 1393
D4Mit254 4 153719865 to 153719999 134 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 254
Gm31239 4 153798547 to 153802226 3679 - lncRNA gene predicted gene, 31239
Tssr40563 4 153806286 to 153806316 30 + TSS region transcription start site region 40563
Gm31353 4 153834513 to 153841765 7252 - lncRNA gene predicted gene, 31353
Gm25880 4 153876384 to 153876515 131 + snoRNA gene predicted gene, 25880
D4Mit313 4 153891902 to 153892097 195 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 313
Gm13115 4 153907386 to 153908666 1280 + lincRNA gene predicted gene 13115
BC039966 4 153948455 to 153950476 2021 - antisense lncRNA gene cDNA sequence BC039966
Tssr44848 4 153950490 to 153950518 28 - TSS region transcription start site region 44848
Tssr40564 4 153955960 to 153955965 5 + TSS region transcription start site region 40564
BC049688 4 153956766 to 153957172 406 unclassified non-coding RNA gene cDNA sequence BC049688
Cpgi15425 4 153956849 to 153957936 1087 CpG island CpG island 15425
Tssr44849 4 153957155 to 153957178 23 - TSS region transcription start site region 44849
Tssr40565 4 153957230 to 153957241 11 + TSS region transcription start site region 40565
A430005L14Rik 4 153957237 to 153961925 4688 + protein coding gene RIKEN cDNA A430005L14 gene
Tssr40566 4 153957247 to 153957275 28 + TSS region transcription start site region 40566
Tssr40567 4 153957284 to 153957295 11 + TSS region transcription start site region 40567
Dffb 4 153964447 to 153975121 10674 - protein coding gene DNA fragmentation factor, beta subunit
Cpgi15426 4 153974470 to 153975669 1199 CpG island CpG island 15426
Tssr44850 4 153975010 to 153975029 19 - TSS region transcription start site region 44850
Tssr44851 4 153975038 to 153975067 29 - TSS region transcription start site region 44851
Tssr40568 4 153975115 to 153975136 21 + TSS region transcription start site region 40568
Tssr40569 4 153975139 to 153975153 14 + TSS region transcription start site region 40569
Tssr40570 4 153975163 to 153975247 84 + TSS region transcription start site region 40570
Cep104 4 153975194 to 154008732 33538 + protein coding gene centrosomal protein 104
Gm42361 4 153985480 to 153988488 3008 - lncRNA gene predicted gene, 42361
Gm31566 4 153993663 to 153999261 5598 - lncRNA gene predicted gene, 31566
Cpgi15427 4 154011400 to 154013050 1650 CpG island CpG island 15427
Tssr40571 4 154011771 to 154011818 47 + TSS region transcription start site region 40571
Lrrc47 4 154011803 to 154021512 9709 + protein coding gene leucine rich repeat containing 47
Tssr40572 4 154012281 to 154012299 18 + TSS region transcription start site region 40572
Smim1 4 154020470 to 154026044 5574 - protein coding gene small integral membrane protein 1
Tssr44852 4 154023765 to 154023777 12 - TSS region transcription start site region 44852
Tssr44853 4 154023787 to 154023798 11 - TSS region transcription start site region 44853
Tssr44854 4 154025623 to 154025634 11 - TSS region transcription start site region 44854
Tssr44855 4 154025657 to 154025686 29 - TSS region transcription start site region 44855
Cpgi15428 4 154025793 to 154026122 329 CpG island CpG island 15428
Tssr44856 4 154025906 to 154025919 13 - TSS region transcription start site region 44856
Tssr44857 4 154025926 to 154025992 66 - TSS region transcription start site region 44857
Tssr40573 4 154026022 to 154026059 37 + TSS region transcription start site region 40573
Tssr44858 4 154026060 to 154026092 32 - TSS region transcription start site region 44858
Tssr40574 4 154026194 to 154026212 18 + TSS region transcription start site region 40574
Gm31672 4 154026221 to 154056559 30338 + lncRNA gene predicted gene, 31672
Ccdc27 4 154026644 to 154042677 16033 - protein coding gene coiled-coil domain containing 27
Tssr44859 4 154042660 to 154042714 54 - TSS region transcription start site region 44859
Gm13117 4 154043733 to 154044423 690 - pseudogene predicted gene 13117
Gm13114 4 154048023 to 154048128 105 - pseudogene predicted gene 13114
Trp73 4 154056253 to 154140208 83955 - protein coding gene transformation related protein 73
Cpgi15429 4 154071565 to 154071819 254 CpG island CpG island 15429
Cpgi15430 4 154081257 to 154081619 362 CpG island CpG island 15430
Tssr44860 4 154081546 to 154081586 40 - TSS region transcription start site region 44860
Tssr44861 4 154082025 to 154082030 5 - TSS region transcription start site region 44861
Tssr44862 4 154082099 to 154082115 16 - TSS region transcription start site region 44862
Tssr40575 4 154082215 to 154082260 45 + TSS region transcription start site region 40575
4930533B18Rik 4 154088062 to 154088920 858 unclassified gene RIKEN cDNA 4930533B18 gene
Trp73os 4 154093479 to 154098353 4874 + antisense lncRNA gene transformation related protein 73, opposite strand
D4Mit344 4 154094054 to 154094240 186 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 344
Tssr44863 4 154097105 to 154097114 9 - TSS region transcription start site region 44863
Cpgi15431 4 154105389 to 154105745 356 CpG island CpG island 15431
Cpgi15432 4 154109634 to 154109835 201 CpG island CpG island 15432
Gm26036 4 154134030 to 154134173 143 + snoRNA gene predicted gene, 26036
Cpgi15433 4 154139369 to 154141882 2513 CpG island CpG island 15433
Tssr44864 4 154139871 to 154139879 8 - TSS region transcription start site region 44864
Cpgi15434 4 154142178 to 154142892 714 CpG island CpG island 15434
Wrap73 4 154142356 to 154156818 14462 + protein coding gene WD repeat containing, antisense to Trp73
Tssr40576 4 154142363 to 154142383 20 + TSS region transcription start site region 40576
Tssr40577 4 154142396 to 154142418 22 + TSS region transcription start site region 40577
Tprgl 4 154157485 to 154160666 3181 - protein coding gene transformation related protein 63 regulated like
Tssr44865 4 154158156 to 154158194 38 - TSS region transcription start site region 44865
Cpgi15435 4 154160024 to 154161474 1450 CpG island CpG island 15435
Tssr44866 4 154160635 to 154160696 61 - TSS region transcription start site region 44866
Gm38459 4 154160733 to 154168259 7526 + lncRNA gene predicted gene, 38459
Cpgi15436 4 154170240 to 154171646 1406 CpG island CpG island 15436
Megf6 4 154170730 to 154275713 104983 + protein coding gene multiple EGF-like-domains 6
Tssr40578 4 154170731 to 154170742 11 + TSS region transcription start site region 40578
Tssr40579 4 154170744 to 154170769 25 + TSS region transcription start site region 40579
Tssr40580 4 154170770 to 154170806 36 + TSS region transcription start site region 40580
Tssr40581 4 154191133 to 154191145 12 + TSS region transcription start site region 40581
Tssr40582 4 154191318 to 154191336 18 + TSS region transcription start site region 40582
Gm13132 4 154220541 to 154221012 471 + pseudogene predicted gene 13132
Tssr40583 4 154237549 to 154237571 22 + TSS region transcription start site region 40583
Tssr40584 4 154237577 to 154237608 31 + TSS region transcription start site region 40584
Arhgef16 4 154278469 to 154300051 21582 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 16
Tssr44867 4 154289050 to 154289053 3 - TSS region transcription start site region 44867
Cpgi15437 4 154299421 to 154300440 1019 CpG island CpG island 15437
Tssr40585 4 154299638 to 154299650 12 + TSS region transcription start site region 40585
Tssr44868 4 154299851 to 154299919 68 - TSS region transcription start site region 44868
Tssr44869 4 154300007 to 154300028 21 - TSS region transcription start site region 44869
Tssr44870 4 154300029 to 154300079 50 - TSS region transcription start site region 44870
Prdm16 4 154316125 to 154636873 320748 - protein coding gene PR domain containing 16
Tssr44871 4 154316315 to 154316318 3 - TSS region transcription start site region 44871
Cpgi15438 4 154328465 to 154328905 440 CpG island CpG island 15438
Cpgi15439 4 154334629 to 154335318 689 CpG island CpG island 15439
Tssr44872 4 154334760 to 154334763 3 - TSS region transcription start site region 44872
Tssr44873 4 154334783 to 154334795 12 - TSS region transcription start site region 44873
B230104I21Rik 4 154336127 to 154349918 13791 + unclassified gene RIKEN cDNA B230104I21 gene
Tssr44874 4 154359742 to 154359759 17 - TSS region transcription start site region 44874
Tssr44875 4 154361344 to 154361347 3 - TSS region transcription start site region 44875
D4Mit209 4 154415509 to 154415630 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 209
Cpgi15440 4 154438395 to 154438933 538 CpG island CpG island 15440
Cpgi15441 4 154464526 to 154464709 183 CpG island CpG island 15441
Tssr44876 4 154471278 to 154471310 32 - TSS region transcription start site region 44876
Cpgi15442 4 154506886 to 154507085 199 CpG island CpG island 15442
Tssr40586 4 154506909 to 154506918 9 + TSS region transcription start site region 40586
Tssr40587 4 154506933 to 154506951 18 + TSS region transcription start site region 40587
Tssr40588 4 154531269 to 154531270 1 + TSS region transcription start site region 40588
Gm13133 4 154550282 to 154557645 7363 + antisense lncRNA gene predicted gene 13133
Gm13134 4 154601197 to 154604202 3005 + antisense lncRNA gene predicted gene 13134
Tssr40589 4 154601299 to 154601302 3 + TSS region transcription start site region 40589
Cpgi15443 4 154604096 to 154604334 238 CpG island CpG island 15443
Tssr40590 4 154619161 to 154619179 18 + TSS region transcription start site region 40590
5930403L14Rik 4 154630691 to 154636367 5676 - lncRNA gene RIKEN cDNA 5930403L14 gene
Cpgi15444 4 154634632 to 154638230 3598 CpG island CpG island 15444
Tssr44877 4 154636119 to 154636135 16 - TSS region transcription start site region 44877
Tssr44878 4 154636204 to 154636215 11 - TSS region transcription start site region 44878
Tssr44879 4 154636225 to 154636238 13 - TSS region transcription start site region 44879
Tssr44880 4 154636300 to 154636357 57 - TSS region transcription start site region 44880
Tssr44881 4 154636773 to 154636780 7 - TSS region transcription start site region 44881
Tssr44882 4 154636809 to 154636822 13 - TSS region transcription start site region 44882
Tssr44883 4 154636831 to 154636853 22 - TSS region transcription start site region 44883
Tssr1394 4 154636910 to 154636934 24 + TSS region transcription start site region 1394
Tssr44884 4 154636963 to 154636986 23 - TSS region transcription start site region 44884
Tssr40591 4 154637141 to 154637148 7 + TSS region transcription start site region 40591
Tssr40592 4 154637546 to 154637564 18 + TSS region transcription start site region 40592
Tssr40593 4 154637569 to 154637587 18 + TSS region transcription start site region 40593
Prdm16os 4 154637576 to 154644724 7148 + antisense lncRNA gene Prdm16 opposite strand transcript
Cpgi15445 4 154641207 to 154641758 551 CpG island CpG island 15445
Gm27202 4 154645083 to 154645701 618 - lincRNA gene predicted gene 27202
Gm13110 4 154645754 to 154655318 9564 - lncRNA gene predicted gene 13110
Actrt2 4 154666433 to 154667867 1434 - protein coding gene actin-related protein T2
Tssr44885 4 154667689 to 154667706 17 - TSS region transcription start site region 44885
Tssr44886 4 154667863 to 154667868 5 - TSS region transcription start site region 44886
1700062A02Rik 4 154668018 to 154668196 178 unclassified gene RIKEN cDNA 1700062A02 gene
Tssr1395 4 154754914 to 154754916 2 + TSS region transcription start site region 1395
Cpgi15446 4 154802094 to 154802597 503 CpG island CpG island 15446
Tssr40594 4 154810496 to 154810503 7 + TSS region transcription start site region 40594
Tssr40595 4 154833977 to 154834014 37 + TSS region transcription start site region 40595
Ttc34 4 154837459 to 154867127 29668 + protein coding gene tetratricopeptide repeat domain 34
Cpgi15447 4 154855333 to 154856751 1418 CpG island CpG island 15447
Gm13112 4 154862834 to 154868053 5219 - antisense lncRNA gene predicted gene 13112
Tssr40596 4 154864392 to 154864400 8 + TSS region transcription start site region 40596
Tssr40597 4 154864410 to 154864425 15 + TSS region transcription start site region 40597
Tssr40598 4 154864502 to 154864507 5 + TSS region transcription start site region 40598
Tssr40599 4 154869564 to 154869566 2 + TSS region transcription start site region 40599
Mmel1 4 154869585 to 154895528 25943 + protein coding gene membrane metallo-endopeptidase-like 1
Tssr40600 4 154869588 to 154869634 46 + TSS region transcription start site region 40600
Tssr40601 4 154869642 to 154869658 16 + TSS region transcription start site region 40601
Tssr44887 4 154872025 to 154872046 21 - TSS region transcription start site region 44887
Cpgi15448 4 154877798 to 154878100 302 CpG island CpG island 15448
Tssr40602 4 154878080 to 154878120 40 + TSS region transcription start site region 40602
Prxl2b 4 154896430 to 154899043 2613 - protein coding gene peroxiredoxin like 2B
Cpgi15449 4 154898399 to 154899456 1057 CpG island CpG island 15449
Tssr44888 4 154899019 to 154899030 11 - TSS region transcription start site region 44888
Tssr44889 4 154899037 to 154899073 36 - TSS region transcription start site region 44889
Tssr44890 4 154899077 to 154899097 20 - TSS region transcription start site region 44890
Tssr1396 4 154900306 to 154900309 3 + TSS region transcription start site region 1396
Cpgi15450 4 154908048 to 154908254 206 CpG island CpG island 15450
Gm42362 4 154915131 to 154919886 4755 - lncRNA gene predicted gene, 42362
Tssr44891 4 154918970 to 154919013 43 - TSS region transcription start site region 44891
Tssr44892 4 154919073 to 154919088 15 - TSS region transcription start site region 44892
Tssr44893 4 154919913 to 154919948 35 - TSS region transcription start site region 44893
Tssr44894 4 154920057 to 154920069 12 - TSS region transcription start site region 44894
Tssr44895 4 154921468 to 154921482 14 - TSS region transcription start site region 44895
Tssr44896 4 154921499 to 154921511 12 - TSS region transcription start site region 44896
Tssr44897 4 154921559 to 154921601 42 - TSS region transcription start site region 44897
Tssr44898 4 154921677 to 154921693 16 - TSS region transcription start site region 44898
Tssr44899 4 154921766 to 154921778 12 - TSS region transcription start site region 44899
Tnfrsf14 4 154921933 to 154928563 6630 - protein coding gene tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)
Tssr44900 4 154924411 to 154924414 3 - TSS region transcription start site region 44900
Tssr44901 4 154925259 to 154925263 4 - TSS region transcription start site region 44901
Tssr44902 4 154928083 to 154928094 11 - TSS region transcription start site region 44902
Tssr44903 4 154928103 to 154928147 44 - TSS region transcription start site region 44903
Tssr44904 4 154928156 to 154928174 18 - TSS region transcription start site region 44904
Tssr44905 4 154928187 to 154928205 18 - TSS region transcription start site region 44905
Tssr40603 4 154928228 to 154928274 46 + TSS region transcription start site region 40603
Tssr44906 4 154928407 to 154928414 7 - TSS region transcription start site region 44906
Tssr44907 4 154928545 to 154928571 26 - TSS region transcription start site region 44907
Tssr44908 4 154928585 to 154928600 15 - TSS region transcription start site region 44908