Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:152957939-154007972

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D4Mit253.1 4 153005727 to 153005852 125 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 253.1
D4Mit253 4 153005837 to 153005983 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 253
Gm25779 4 153013490 to 153013584 94 - miRNA gene predicted gene, 25779
Tssr44842 4 153030455 to 153030505 50 - TSS region transcription start site region 44842
Tssr40560 4 153031037 to 153031041 4 + TSS region transcription start site region 40560
D4Mit131.1 4 153069171 to 153069283 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 131.1
D4Mit131 4 153069178 to 153069351 173 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 131
Tssr1392 4 153082054 to 153082055 1 + TSS region transcription start site region 1392
D4Mit357 4 153121929 to 153122039 110 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 357
D4Mit208 4 153130802 to 153130950 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 208
Cpgi15420 4 153136305 to 153136490 185 CpG island CpG island 15420
Gm13173 4 153145590 to 153146943 1353 - lincRNA gene predicted gene 13173
Gm31055 4 153148289 to 153165127 16838 - lncRNA gene predicted gene, 31055
Gm13174 4 153218176 to 153218595 419 + lincRNA gene predicted gene 13174
Tssr44843 4 153241481 to 153241492 11 - TSS region transcription start site region 44843
Ajap1 4 153373221 to 153482811 109590 - protein coding gene adherens junction associated protein 1
Tssr40561 4 153410824 to 153410828 4 + TSS region transcription start site region 40561
Cpgi15421 4 153439165 to 153439330 165 CpG island CpG island 15421
Cpgi15422 4 153480769 to 153480946 177 CpG island CpG island 15422
Cpgi15423 4 153481038 to 153483647 2609 CpG island CpG island 15423
Tssr44844 4 153482768 to 153482787 19 - TSS region transcription start site region 44844
Tssr44845 4 153482939 to 153482972 33 - TSS region transcription start site region 44845
Tssr44846 4 153483971 to 153483975 4 - TSS region transcription start site region 44846
Gm42358 4 153496714 to 153498960 2246 - lncRNA gene predicted gene, 42358
Gm42359 4 153518919 to 153548034 29115 - lncRNA gene predicted gene, 42359
Gm31118 4 153554533 to 153558250 3717 - lncRNA gene predicted gene, 31118
Gm31180 4 153585677 to 153586237 560 + lncRNA gene predicted gene, 31180
Gm42360 4 153612441 to 153618186 5745 - lncRNA gene predicted gene, 42360
Tssr44847 4 153632214 to 153632222 8 - TSS region transcription start site region 44847
Cpgi15424 4 153683354 to 153683725 371 CpG island CpG island 15424
Tssr40562 4 153694246 to 153694258 12 + TSS region transcription start site region 40562
Tssr1393 4 153697569 to 153697578 9 + TSS region transcription start site region 1393
D4Mit254 4 153719865 to 153719999 134 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 254
Gm31239 4 153798547 to 153802226 3679 - lncRNA gene predicted gene, 31239
Tssr40563 4 153806286 to 153806316 30 + TSS region transcription start site region 40563
Gm31353 4 153834513 to 153841765 7252 - lncRNA gene predicted gene, 31353
Gm25880 4 153876384 to 153876515 131 + snoRNA gene predicted gene, 25880
D4Mit313 4 153891902 to 153892097 195 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 313
Gm13115 4 153907386 to 153908666 1280 + lincRNA gene predicted gene 13115
BC039966 4 153948455 to 153950476 2021 - antisense lncRNA gene cDNA sequence BC039966
Tssr44848 4 153950490 to 153950518 28 - TSS region transcription start site region 44848
Tssr40564 4 153955960 to 153955965 5 + TSS region transcription start site region 40564
BC049688 4 153956766 to 153957172 406 unclassified non-coding RNA gene cDNA sequence BC049688
Cpgi15425 4 153956849 to 153957936 1087 CpG island CpG island 15425
Tssr44849 4 153957155 to 153957178 23 - TSS region transcription start site region 44849
Tssr40565 4 153957230 to 153957241 11 + TSS region transcription start site region 40565
A430005L14Rik 4 153957237 to 153961925 4688 + protein coding gene RIKEN cDNA A430005L14 gene
Tssr40566 4 153957247 to 153957275 28 + TSS region transcription start site region 40566
Tssr40567 4 153957284 to 153957295 11 + TSS region transcription start site region 40567
Dffb 4 153964447 to 153975121 10674 - protein coding gene DNA fragmentation factor, beta subunit
Cpgi15426 4 153974470 to 153975669 1199 CpG island CpG island 15426
Tssr44850 4 153975010 to 153975029 19 - TSS region transcription start site region 44850
Tssr44851 4 153975038 to 153975067 29 - TSS region transcription start site region 44851
Tssr40568 4 153975115 to 153975136 21 + TSS region transcription start site region 40568
Tssr40569 4 153975139 to 153975153 14 + TSS region transcription start site region 40569
Tssr40570 4 153975163 to 153975247 84 + TSS region transcription start site region 40570
Cep104 4 153975194 to 154008732 33538 + protein coding gene centrosomal protein 104
Gm42361 4 153985480 to 153988488 3008 - lncRNA gene predicted gene, 42361
Gm31566 4 153993663 to 153999261 5598 - lncRNA gene predicted gene, 31566