Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:152205824-154615828

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225 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acot7 4 152178134 to 152271855 93721 + protein coding gene acyl-CoA thioesterase 7
Tssr40533 4 152217247 to 152217254 7 + TSS region transcription start site region 40533
Tssr1391 4 152224342 to 152224383 41 + TSS region transcription start site region 1391
Tssr40534 4 152241968 to 152241977 9 + TSS region transcription start site region 40534
Tssr40535 4 152242014 to 152242023 9 + TSS region transcription start site region 40535
Cpgi15401 4 152273565 to 152275117 1552 CpG island CpG island 15401
Tssr40536 4 152274090 to 152274163 73 + TSS region transcription start site region 40536
Tssr40537 4 152274191 to 152274232 41 + TSS region transcription start site region 40537
Gpr153 4 152274232 to 152285337 11105 + protein coding gene G protein-coupled receptor 153
Cpgi15402 4 152279104 to 152279394 290 CpG island CpG island 15402
Cpgi15403 4 152282382 to 152284072 1690 CpG island CpG island 15403
Hes3 4 152285972 to 152291662 5690 - protein coding gene hes family bHLH transcription factor 3
Cpgi15404 4 152286098 to 152287338 1240 CpG island CpG island 15404
Tssr44825 4 152288070 to 152288074 4 - TSS region transcription start site region 44825
Cpgi15405 4 152290260 to 152290902 642 CpG island CpG island 15405
Cpgi15406 4 152291153 to 152291310 157 CpG island CpG island 15406
Tssr44826 4 152291655 to 152291659 4 - TSS region transcription start site region 44826
Tssr44827 4 152291663 to 152291672 9 - TSS region transcription start site region 44827
Tssr40538 4 152296166 to 152296180 14 + TSS region transcription start site region 40538
Tssr40539 4 152296200 to 152296221 21 + TSS region transcription start site region 40539
Cpgi15407 4 152296776 to 152298065 1289 CpG island CpG island 15407
Tssr40540 4 152297205 to 152297220 15 + TSS region transcription start site region 40540
Icmt 4 152297227 to 152307121 9894 + protein coding gene isoprenylcysteine carboxyl methyltransferase
Tssr40541 4 152297250 to 152297255 5 + TSS region transcription start site region 40541
Tssr40542 4 152297260 to 152297273 13 + TSS region transcription start site region 40542
Tssr40543 4 152297274 to 152297326 52 + TSS region transcription start site region 40543
Tssr40544 4 152297329 to 152297368 39 + TSS region transcription start site region 40544
Tssr40545 4 152297489 to 152297500 11 + TSS region transcription start site region 40545
Tssr44828 4 152305263 to 152305270 7 - TSS region transcription start site region 44828
Tssr44829 4 152305271 to 152305283 12 - TSS region transcription start site region 44829
Rnf207 4 152307019 to 152318993 11974 - protein coding gene ring finger protein 207
Cpgi15408 4 152312933 to 152313686 753 CpG island CpG island 15408
Cpgi15409 4 152315450 to 152316272 822 CpG island CpG island 15409
Tssr44830 4 152317748 to 152317759 11 - TSS region transcription start site region 44830
Tssr44831 4 152317813 to 152317824 11 - TSS region transcription start site region 44831
Tssr44832 4 152318569 to 152318654 85 - TSS region transcription start site region 44832
Cpgi15410 4 152318696 to 152319155 459 CpG island CpG island 15410
Tssr40546 4 152318723 to 152318759 36 + TSS region transcription start site region 40546
Tssr44833 4 152319000 to 152319014 14 - TSS region transcription start site region 44833
9430083M05Rik 4 152321318 to 152324725 3407 - lncRNA gene RIKEN cDNA 9430083M05 gene
Cpgi15411 4 152325553 to 152326591 1038 CpG island CpG island 15411
Rpl22 4 152325742 to 152334071 8329 + protein coding gene ribosomal protein L22
Tssr40547 4 152325831 to 152325876 45 + TSS region transcription start site region 40547
Tssr40548 4 152330053 to 152330072 19 + TSS region transcription start site region 40548
Tssr44834 4 152332409 to 152332434 25 - TSS region transcription start site region 44834
Cpgi15412 4 152338227 to 152339992 1765 CpG island CpG island 15412
Tssr40549 4 152338619 to 152338709 90 + TSS region transcription start site region 40549
Chd5 4 152338651 to 152390194 51543 + protein coding gene chromodomain helicase DNA binding protein 5
Tssr40550 4 152338717 to 152338762 45 + TSS region transcription start site region 40550
Tssr40551 4 152338815 to 152338845 30 + TSS region transcription start site region 40551
Tssr40552 4 152338914 to 152338967 53 + TSS region transcription start site region 40552
Tssr40553 4 152338974 to 152338998 24 + TSS region transcription start site region 40553
Tssr40554 4 152341548 to 152341551 3 + TSS region transcription start site region 40554
Tssr40555 4 152341554 to 152341573 19 + TSS region transcription start site region 40555
Gm13645 4 152352198 to 152353641 1443 - unclassified non-coding RNA gene predicted gene 13645
Tssr40556 4 152353591 to 152353604 13 + TSS region transcription start site region 40556
Cpgi15413 4 152360493 to 152361277 784 CpG island CpG island 15413
Tssr44835 4 152361017 to 152361025 8 - TSS region transcription start site region 44835
Kcnab2 4 152390740 to 152477549 86809 - protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 2
Gm16333 4 152410800 to 152411262 462 + antisense lncRNA gene predicted gene 16333
Gm16334 4 152418283 to 152421834 3551 - unclassified non-coding RNA gene predicted gene 16334
Tssr44836 4 152418750 to 152418761 11 - TSS region transcription start site region 44836
Tssr44837 4 152418798 to 152418810 12 - TSS region transcription start site region 44837
D4Mit356 4 152429969 to 152430092 123 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 356
Cpgi15414 4 152448303 to 152448472 169 CpG island CpG island 15414
Tssr44838 4 152448732 to 152448750 18 - TSS region transcription start site region 44838
Tssr44839 4 152448767 to 152448789 22 - TSS region transcription start site region 44839
Tssr44840 4 152448808 to 152448848 40 - TSS region transcription start site region 44840
Cpgi15415 4 152476590 to 152478480 1890 CpG island CpG island 15415
Nphp4 4 152476706 to 152563183 86477 + protein coding gene nephronophthisis 4 (juvenile) homolog (human)
Tssr44841 4 152477462 to 152477549 87 - TSS region transcription start site region 44841
Tssr40557 4 152477732 to 152477766 34 + TSS region transcription start site region 40557
Tssr40558 4 152478176 to 152478183 7 + TSS region transcription start site region 40558
Tssr40559 4 152488305 to 152488332 27 + TSS region transcription start site region 40559
Cpgi15416 4 152558367 to 152558551 184 CpG island CpG island 15416
Gm30734 4 152580818 to 152583635 2817 - lncRNA gene predicted gene, 30734
Cpgi15417 4 152646968 to 152647236 268 CpG island CpG island 15417
Cpgi15418 4 152667132 to 152667316 184 CpG island CpG island 15418
Gm13172 4 152677748 to 152678003 255 - pseudogene predicted gene 13172
Gm833 4 152697540 to 152700515 2975 + lincRNA gene predicted gene 833
Gm30851 4 152762770 to 152772326 9556 + lncRNA gene predicted gene, 30851
Cpgi15419 4 152779647 to 152779954 307 CpG island CpG island 15419
Gm30911 4 152851543 to 152859293 7750 - lncRNA gene predicted gene, 30911
D4Mit253.1 4 153005727 to 153005852 125 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 253.1
D4Mit253 4 153005837 to 153005983 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 253
Gm25779 4 153013490 to 153013584 94 - miRNA gene predicted gene, 25779
Tssr44842 4 153030455 to 153030505 50 - TSS region transcription start site region 44842
Tssr40560 4 153031037 to 153031041 4 + TSS region transcription start site region 40560
D4Mit131.1 4 153069171 to 153069283 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 131.1
D4Mit131 4 153069178 to 153069351 173 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 131
Tssr1392 4 153082054 to 153082055 1 + TSS region transcription start site region 1392
D4Mit357 4 153121929 to 153122039 110 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 357
D4Mit208 4 153130802 to 153130950 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 208
Cpgi15420 4 153136305 to 153136490 185 CpG island CpG island 15420
Gm13173 4 153145590 to 153146943 1353 - lincRNA gene predicted gene 13173
Gm31055 4 153148289 to 153165127 16838 - lncRNA gene predicted gene, 31055
Gm13174 4 153218176 to 153218595 419 + lincRNA gene predicted gene 13174
Tssr44843 4 153241481 to 153241492 11 - TSS region transcription start site region 44843
Ajap1 4 153373221 to 153482811 109590 - protein coding gene adherens junction associated protein 1
Tssr40561 4 153410824 to 153410828 4 + TSS region transcription start site region 40561
Cpgi15421 4 153439165 to 153439330 165 CpG island CpG island 15421
Cpgi15422 4 153480769 to 153480946 177 CpG island CpG island 15422
Cpgi15423 4 153481038 to 153483647 2609 CpG island CpG island 15423
Tssr44844 4 153482768 to 153482787 19 - TSS region transcription start site region 44844
Tssr44845 4 153482939 to 153482972 33 - TSS region transcription start site region 44845
Tssr44846 4 153483971 to 153483975 4 - TSS region transcription start site region 44846
Gm42358 4 153496714 to 153498960 2246 - lncRNA gene predicted gene, 42358
Gm42359 4 153518919 to 153548034 29115 - lncRNA gene predicted gene, 42359
Gm31118 4 153554533 to 153558250 3717 - lncRNA gene predicted gene, 31118
Gm31180 4 153585677 to 153586237 560 + lncRNA gene predicted gene, 31180
Gm42360 4 153612441 to 153618186 5745 - lncRNA gene predicted gene, 42360
Tssr44847 4 153632214 to 153632222 8 - TSS region transcription start site region 44847
Cpgi15424 4 153683354 to 153683725 371 CpG island CpG island 15424
Tssr40562 4 153694246 to 153694258 12 + TSS region transcription start site region 40562
Tssr1393 4 153697569 to 153697578 9 + TSS region transcription start site region 1393
D4Mit254 4 153719865 to 153719999 134 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 254
Gm31239 4 153798547 to 153802226 3679 - lncRNA gene predicted gene, 31239
Tssr40563 4 153806286 to 153806316 30 + TSS region transcription start site region 40563
Gm31353 4 153834513 to 153841765 7252 - lncRNA gene predicted gene, 31353
Gm25880 4 153876384 to 153876515 131 + snoRNA gene predicted gene, 25880
D4Mit313 4 153891902 to 153892097 195 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 313
Gm13115 4 153907386 to 153908666 1280 + lincRNA gene predicted gene 13115
BC039966 4 153948455 to 153950476 2021 - antisense lncRNA gene cDNA sequence BC039966
Tssr44848 4 153950490 to 153950518 28 - TSS region transcription start site region 44848
Tssr40564 4 153955960 to 153955965 5 + TSS region transcription start site region 40564
BC049688 4 153956766 to 153957172 406 unclassified non-coding RNA gene cDNA sequence BC049688
Cpgi15425 4 153956849 to 153957936 1087 CpG island CpG island 15425
Tssr44849 4 153957155 to 153957178 23 - TSS region transcription start site region 44849
Tssr40565 4 153957230 to 153957241 11 + TSS region transcription start site region 40565
A430005L14Rik 4 153957237 to 153961925 4688 + protein coding gene RIKEN cDNA A430005L14 gene
Tssr40566 4 153957247 to 153957275 28 + TSS region transcription start site region 40566
Tssr40567 4 153957284 to 153957295 11 + TSS region transcription start site region 40567
Dffb 4 153964447 to 153975121 10674 - protein coding gene DNA fragmentation factor, beta subunit
Cpgi15426 4 153974470 to 153975669 1199 CpG island CpG island 15426
Tssr44850 4 153975010 to 153975029 19 - TSS region transcription start site region 44850
Tssr44851 4 153975038 to 153975067 29 - TSS region transcription start site region 44851
Tssr40568 4 153975115 to 153975136 21 + TSS region transcription start site region 40568
Tssr40569 4 153975139 to 153975153 14 + TSS region transcription start site region 40569
Tssr40570 4 153975163 to 153975247 84 + TSS region transcription start site region 40570
Cep104 4 153975194 to 154008732 33538 + protein coding gene centrosomal protein 104
Gm42361 4 153985480 to 153988488 3008 - lncRNA gene predicted gene, 42361
Gm31566 4 153993663 to 153999261 5598 - lncRNA gene predicted gene, 31566
Cpgi15427 4 154011400 to 154013050 1650 CpG island CpG island 15427
Tssr40571 4 154011771 to 154011818 47 + TSS region transcription start site region 40571
Lrrc47 4 154011803 to 154021512 9709 + protein coding gene leucine rich repeat containing 47
Tssr40572 4 154012281 to 154012299 18 + TSS region transcription start site region 40572
Smim1 4 154020470 to 154026044 5574 - protein coding gene small integral membrane protein 1
Tssr44852 4 154023765 to 154023777 12 - TSS region transcription start site region 44852
Tssr44853 4 154023787 to 154023798 11 - TSS region transcription start site region 44853
Tssr44854 4 154025623 to 154025634 11 - TSS region transcription start site region 44854
Tssr44855 4 154025657 to 154025686 29 - TSS region transcription start site region 44855
Cpgi15428 4 154025793 to 154026122 329 CpG island CpG island 15428
Tssr44856 4 154025906 to 154025919 13 - TSS region transcription start site region 44856
Tssr44857 4 154025926 to 154025992 66 - TSS region transcription start site region 44857
Tssr40573 4 154026022 to 154026059 37 + TSS region transcription start site region 40573
Tssr44858 4 154026060 to 154026092 32 - TSS region transcription start site region 44858
Tssr40574 4 154026194 to 154026212 18 + TSS region transcription start site region 40574
Gm31672 4 154026221 to 154056559 30338 + lncRNA gene predicted gene, 31672
Ccdc27 4 154026644 to 154042677 16033 - protein coding gene coiled-coil domain containing 27
Tssr44859 4 154042660 to 154042714 54 - TSS region transcription start site region 44859
Gm13117 4 154043733 to 154044423 690 - pseudogene predicted gene 13117
Gm13114 4 154048023 to 154048128 105 - pseudogene predicted gene 13114
Trp73 4 154056253 to 154140208 83955 - protein coding gene transformation related protein 73
Cpgi15429 4 154071565 to 154071819 254 CpG island CpG island 15429
Cpgi15430 4 154081257 to 154081619 362 CpG island CpG island 15430
Tssr44860 4 154081546 to 154081586 40 - TSS region transcription start site region 44860
Tssr44861 4 154082025 to 154082030 5 - TSS region transcription start site region 44861
Tssr44862 4 154082099 to 154082115 16 - TSS region transcription start site region 44862
Tssr40575 4 154082215 to 154082260 45 + TSS region transcription start site region 40575
4930533B18Rik 4 154088062 to 154088920 858 unclassified gene RIKEN cDNA 4930533B18 gene
Trp73os 4 154093479 to 154098353 4874 + antisense lncRNA gene transformation related protein 73, opposite strand
D4Mit344 4 154094054 to 154094240 186 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 344
Tssr44863 4 154097105 to 154097114 9 - TSS region transcription start site region 44863
Cpgi15431 4 154105389 to 154105745 356 CpG island CpG island 15431
Cpgi15432 4 154109634 to 154109835 201 CpG island CpG island 15432
Gm26036 4 154134030 to 154134173 143 + snoRNA gene predicted gene, 26036
Cpgi15433 4 154139369 to 154141882 2513 CpG island CpG island 15433
Tssr44864 4 154139871 to 154139879 8 - TSS region transcription start site region 44864
Cpgi15434 4 154142178 to 154142892 714 CpG island CpG island 15434
Wrap73 4 154142356 to 154156818 14462 + protein coding gene WD repeat containing, antisense to Trp73
Tssr40576 4 154142363 to 154142383 20 + TSS region transcription start site region 40576
Tssr40577 4 154142396 to 154142418 22 + TSS region transcription start site region 40577
Tprgl 4 154157485 to 154160666 3181 - protein coding gene transformation related protein 63 regulated like
Tssr44865 4 154158156 to 154158194 38 - TSS region transcription start site region 44865
Cpgi15435 4 154160024 to 154161474 1450 CpG island CpG island 15435
Tssr44866 4 154160635 to 154160696 61 - TSS region transcription start site region 44866
Gm38459 4 154160733 to 154168259 7526 + lncRNA gene predicted gene, 38459
Cpgi15436 4 154170240 to 154171646 1406 CpG island CpG island 15436
Megf6 4 154170730 to 154275713 104983 + protein coding gene multiple EGF-like-domains 6
Tssr40578 4 154170731 to 154170742 11 + TSS region transcription start site region 40578
Tssr40579 4 154170744 to 154170769 25 + TSS region transcription start site region 40579
Tssr40580 4 154170770 to 154170806 36 + TSS region transcription start site region 40580
Tssr40581 4 154191133 to 154191145 12 + TSS region transcription start site region 40581
Tssr40582 4 154191318 to 154191336 18 + TSS region transcription start site region 40582
Gm13132 4 154220541 to 154221012 471 + pseudogene predicted gene 13132
Tssr40583 4 154237549 to 154237571 22 + TSS region transcription start site region 40583
Tssr40584 4 154237577 to 154237608 31 + TSS region transcription start site region 40584
Arhgef16 4 154278469 to 154300051 21582 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 16
Tssr44867 4 154289050 to 154289053 3 - TSS region transcription start site region 44867
Cpgi15437 4 154299421 to 154300440 1019 CpG island CpG island 15437