Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:152193367-152923551

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acot7 4 152178134 to 152271855 93721 + protein coding gene acyl-CoA thioesterase 7
Tssr40530 4 152199805 to 152199821 16 + TSS region transcription start site region 40530
Tssr40531 4 152199822 to 152199872 50 + TSS region transcription start site region 40531
Tssr1390 4 152199889 to 152199899 10 + TSS region transcription start site region 1390
Tssr40532 4 152199996 to 152200039 43 + TSS region transcription start site region 40532
Gm27500 4 152201807 to 152202142 335 - unclassified non-coding RNA gene predicted gene, 27500
Gm13096 4 152203926 to 152204467 541 + sense intronic lncRNA gene predicted gene 13096
Tssr40533 4 152217247 to 152217254 7 + TSS region transcription start site region 40533
Tssr1391 4 152224342 to 152224383 41 + TSS region transcription start site region 1391
Tssr40534 4 152241968 to 152241977 9 + TSS region transcription start site region 40534
Tssr40535 4 152242014 to 152242023 9 + TSS region transcription start site region 40535
Cpgi15401 4 152273565 to 152275117 1552 CpG island CpG island 15401
Tssr40536 4 152274090 to 152274163 73 + TSS region transcription start site region 40536
Tssr40537 4 152274191 to 152274232 41 + TSS region transcription start site region 40537
Gpr153 4 152274232 to 152285337 11105 + protein coding gene G protein-coupled receptor 153
Cpgi15402 4 152279104 to 152279394 290 CpG island CpG island 15402
Cpgi15403 4 152282382 to 152284072 1690 CpG island CpG island 15403
Hes3 4 152285972 to 152291662 5690 - protein coding gene hes family bHLH transcription factor 3
Cpgi15404 4 152286098 to 152287338 1240 CpG island CpG island 15404
Tssr44825 4 152288070 to 152288074 4 - TSS region transcription start site region 44825
Cpgi15405 4 152290260 to 152290902 642 CpG island CpG island 15405
Cpgi15406 4 152291153 to 152291310 157 CpG island CpG island 15406
Tssr44826 4 152291655 to 152291659 4 - TSS region transcription start site region 44826
Tssr44827 4 152291663 to 152291672 9 - TSS region transcription start site region 44827
Tssr40538 4 152296166 to 152296180 14 + TSS region transcription start site region 40538
Tssr40539 4 152296200 to 152296221 21 + TSS region transcription start site region 40539
Cpgi15407 4 152296776 to 152298065 1289 CpG island CpG island 15407
Tssr40540 4 152297205 to 152297220 15 + TSS region transcription start site region 40540
Icmt 4 152297227 to 152307121 9894 + protein coding gene isoprenylcysteine carboxyl methyltransferase
Tssr40541 4 152297250 to 152297255 5 + TSS region transcription start site region 40541
Tssr40542 4 152297260 to 152297273 13 + TSS region transcription start site region 40542
Tssr40543 4 152297274 to 152297326 52 + TSS region transcription start site region 40543
Tssr40544 4 152297329 to 152297368 39 + TSS region transcription start site region 40544
Tssr40545 4 152297489 to 152297500 11 + TSS region transcription start site region 40545
Tssr44828 4 152305263 to 152305270 7 - TSS region transcription start site region 44828
Tssr44829 4 152305271 to 152305283 12 - TSS region transcription start site region 44829
Rnf207 4 152307019 to 152318993 11974 - protein coding gene ring finger protein 207
Cpgi15408 4 152312933 to 152313686 753 CpG island CpG island 15408
Cpgi15409 4 152315450 to 152316272 822 CpG island CpG island 15409
Tssr44830 4 152317748 to 152317759 11 - TSS region transcription start site region 44830
Tssr44831 4 152317813 to 152317824 11 - TSS region transcription start site region 44831
Tssr44832 4 152318569 to 152318654 85 - TSS region transcription start site region 44832
Cpgi15410 4 152318696 to 152319155 459 CpG island CpG island 15410
Tssr40546 4 152318723 to 152318759 36 + TSS region transcription start site region 40546
Tssr44833 4 152319000 to 152319014 14 - TSS region transcription start site region 44833
9430083M05Rik 4 152321318 to 152324725 3407 - lncRNA gene RIKEN cDNA 9430083M05 gene
Cpgi15411 4 152325553 to 152326591 1038 CpG island CpG island 15411
Rpl22 4 152325742 to 152334071 8329 + protein coding gene ribosomal protein L22
Tssr40547 4 152325831 to 152325876 45 + TSS region transcription start site region 40547
Tssr40548 4 152330053 to 152330072 19 + TSS region transcription start site region 40548
Tssr44834 4 152332409 to 152332434 25 - TSS region transcription start site region 44834
Cpgi15412 4 152338227 to 152339992 1765 CpG island CpG island 15412
Tssr40549 4 152338619 to 152338709 90 + TSS region transcription start site region 40549
Chd5 4 152338651 to 152390194 51543 + protein coding gene chromodomain helicase DNA binding protein 5
Tssr40550 4 152338717 to 152338762 45 + TSS region transcription start site region 40550
Tssr40551 4 152338815 to 152338845 30 + TSS region transcription start site region 40551
Tssr40552 4 152338914 to 152338967 53 + TSS region transcription start site region 40552
Tssr40553 4 152338974 to 152338998 24 + TSS region transcription start site region 40553
Tssr40554 4 152341548 to 152341551 3 + TSS region transcription start site region 40554
Tssr40555 4 152341554 to 152341573 19 + TSS region transcription start site region 40555
Gm13645 4 152352198 to 152353641 1443 - unclassified non-coding RNA gene predicted gene 13645
Tssr40556 4 152353591 to 152353604 13 + TSS region transcription start site region 40556
Cpgi15413 4 152360493 to 152361277 784 CpG island CpG island 15413
Tssr44835 4 152361017 to 152361025 8 - TSS region transcription start site region 44835
Kcnab2 4 152390740 to 152477549 86809 - protein coding gene potassium voltage-gated channel, shaker-related subfamily, beta member 2
Gm16333 4 152410800 to 152411262 462 + antisense lncRNA gene predicted gene 16333
Gm16334 4 152418283 to 152421834 3551 - unclassified non-coding RNA gene predicted gene 16334
Tssr44836 4 152418750 to 152418761 11 - TSS region transcription start site region 44836
Tssr44837 4 152418798 to 152418810 12 - TSS region transcription start site region 44837
D4Mit356 4 152429969 to 152430092 123 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 356
Cpgi15414 4 152448303 to 152448472 169 CpG island CpG island 15414
Tssr44838 4 152448732 to 152448750 18 - TSS region transcription start site region 44838
Tssr44839 4 152448767 to 152448789 22 - TSS region transcription start site region 44839
Tssr44840 4 152448808 to 152448848 40 - TSS region transcription start site region 44840
Cpgi15415 4 152476590 to 152478480 1890 CpG island CpG island 15415
Nphp4 4 152476706 to 152563183 86477 + protein coding gene nephronophthisis 4 (juvenile) homolog (human)
Tssr44841 4 152477462 to 152477549 87 - TSS region transcription start site region 44841
Tssr40557 4 152477732 to 152477766 34 + TSS region transcription start site region 40557
Tssr40558 4 152478176 to 152478183 7 + TSS region transcription start site region 40558
Tssr40559 4 152488305 to 152488332 27 + TSS region transcription start site region 40559
Cpgi15416 4 152558367 to 152558551 184 CpG island CpG island 15416
Gm30734 4 152580818 to 152583635 2817 - lncRNA gene predicted gene, 30734
Cpgi15417 4 152646968 to 152647236 268 CpG island CpG island 15417
Cpgi15418 4 152667132 to 152667316 184 CpG island CpG island 15418
Gm13172 4 152677748 to 152678003 255 - pseudogene predicted gene 13172
Gm833 4 152697540 to 152700515 2975 + lincRNA gene predicted gene 833
Gm30851 4 152762770 to 152772326 9556 + lncRNA gene predicted gene, 30851
Cpgi15419 4 152779647 to 152779954 307 CpG island CpG island 15419
Gm30911 4 152851543 to 152859293 7750 - lncRNA gene predicted gene, 30911