Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:151715993-152116414

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Camta1 4 151059523 to 151861768 802245 - protein coding gene calmodulin binding transcription activator 1
Gm38442 4 151638629 to 151723298 84669 - lncRNA gene predicted gene, 38442
Cpgi15374 4 151736938 to 151737352 414 CpG island CpG island 15374
Gm42357 4 151840553 to 151867789 27236 + lncRNA gene predicted gene, 42357
Tssr1388 4 151848138 to 151848139 1 - TSS region transcription start site region 1388
Tssr44793 4 151853264 to 151853268 4 - TSS region transcription start site region 44793
Cpgi15375 4 151860540 to 151862945 2405 CpG island CpG island 15375
Tssr44794 4 151861667 to 151861679 12 - TSS region transcription start site region 44794
Tssr44795 4 151861698 to 151861761 63 - TSS region transcription start site region 44795
Tssr44796 4 151861762 to 151861773 11 - TSS region transcription start site region 44796
Tssr40478 4 151862177 to 151862219 42 + TSS region transcription start site region 40478
Tssr40479 4 151862244 to 151862255 11 + TSS region transcription start site region 40479
9230110K08Rik 4 151862339 to 151863311 972 + lncRNA gene RIKEN cDNA 9230110K08 gene
Tssr40480 4 151862648 to 151862671 23 + TSS region transcription start site region 40480
Cpgi15376 4 151875212 to 151875518 306 CpG island CpG island 15376
Cpgi15377 4 151881835 to 151882159 324 CpG island CpG island 15377
Cpgi15378 4 151895253 to 151895507 254 CpG island CpG island 15378
Cpgi15379 4 151908101 to 151908341 240 CpG island CpG island 15379
Gm37141 4 151915993 to 151916414 421 - unclassified gene predicted gene, 37141
1110001D16Rik 4 151932377 to 151932850 473 unclassified gene RIKEN cDNA 1110001D16 gene
Cpgi15380 4 151933103 to 151934696 1593 CpG island CpG island 15380
Tssr40481 4 151933685 to 151933696 11 + TSS region transcription start site region 40481
Tssr40482 4 151933706 to 151933715 9 + TSS region transcription start site region 40482
Dnajc11 4 151933714 to 151981959 48245 + protein coding gene DnaJ heat shock protein family (Hsp40) member C11
Tssr40483 4 151933720 to 151933755 35 + TSS region transcription start site region 40483
Thap3 4 151982638 to 151988986 6348 - protein coding gene THAP domain containing, apoptosis associated protein 3
Cpgi15381 4 151988286 to 151989180 894 CpG island CpG island 15381
Tssr44797 4 151988950 to 151989011 61 - TSS region transcription start site region 44797
Tssr44798 4 151989014 to 151989025 11 - TSS region transcription start site region 44798
Phf13 4 151989631 to 151996179 6548 - protein coding gene PHD finger protein 13
Cpgi15382 4 151994466 to 151997159 2693 CpG island CpG island 15382
Tssr44799 4 151996113 to 151996243 130 - TSS region transcription start site region 44799
D4Ertd117e 4 152006471 to 152006715 244 DNA segment DNA segment, Chr 4, ERATO Doi 117, expressed
Gm9768 4 152006759 to 152009619 2860 - unclassified gene predicted gene 9768
Cpgi15383 4 152008360 to 152010344 1984 CpG island CpG island 15383
Klhl21 4 152008891 to 152017677 8786 + protein coding gene kelch-like 21
Tssr40484 4 152008894 to 152008928 34 + TSS region transcription start site region 40484
Tssr40485 4 152008936 to 152008948 12 + TSS region transcription start site region 40485
Tssr40486 4 152009012 to 152009023 11 + TSS region transcription start site region 40486
Tssr40487 4 152009031 to 152009053 22 + TSS region transcription start site region 40487
Tssr40488 4 152009072 to 152009083 11 + TSS region transcription start site region 40488
Zbtb48 4 152019774 to 152027671 7897 - protein coding gene zinc finger and BTB domain containing 48
Cpgi15384 4 152026838 to 152028324 1486 CpG island CpG island 15384
Tssr44800 4 152027601 to 152027624 23 - TSS region transcription start site region 44800
Tssr44801 4 152027632 to 152027684 52 - TSS region transcription start site region 44801
Tssr40489 4 152027802 to 152027825 23 + TSS region transcription start site region 40489
Tas1r1 4 152027914 to 152038490 10576 - protein coding gene taste receptor, type 1, member 1
Tssr44802 4 152031377 to 152031393 16 - TSS region transcription start site region 44802
Tssr44803 4 152033753 to 152033760 7 - TSS region transcription start site region 44803
Tssr44804 4 152038434 to 152038445 11 - TSS region transcription start site region 44804
Cpgi15385 4 152039123 to 152040221 1098 CpG island CpG island 15385
Tssr40490 4 152039315 to 152039356 41 + TSS region transcription start site region 40490
Nol9 4 152039321 to 152061494 22173 + protein coding gene nucleolar protein 9
Tssr40491 4 152039358 to 152039367 9 + TSS region transcription start site region 40491
Tssr40492 4 152058066 to 152058078 12 + TSS region transcription start site region 40492
Tssr1389 4 152065504 to 152065508 4 + TSS region transcription start site region 1389
Plekhg5 4 152072498 to 152115400 42902 + protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 5
Tssr40493 4 152076201 to 152076209 8 + TSS region transcription start site region 40493
Tssr40494 4 152076256 to 152076265 9 + TSS region transcription start site region 40494
Cpgi15386 4 152086237 to 152087354 1117 CpG island CpG island 15386
Tssr40495 4 152086830 to 152086893 63 + TSS region transcription start site region 40495
Cpgi15387 4 152096690 to 152096950 260 CpG island CpG island 15387
Tssr40496 4 152096698 to 152096716 18 + TSS region transcription start site region 40496
Tssr40497 4 152096736 to 152096782 46 + TSS region transcription start site region 40497
Cpgi15388 4 152107547 to 152108579 1032 CpG island CpG island 15388
Tssr40498 4 152107719 to 152107761 42 + TSS region transcription start site region 40498
Tssr40499 4 152108161 to 152108206 45 + TSS region transcription start site region 40499
Tssr40500 4 152113827 to 152113853 26 + TSS region transcription start site region 40500
Cpgi15389 4 152115776 to 152116297 521 CpG island CpG island 15389
Tnfrsf25 4 152115934 to 152120119 4185 + protein coding gene tumor necrosis factor receptor superfamily, member 25
Tssr40501 4 152116017 to 152116028 11 + TSS region transcription start site region 40501
Tssr40502 4 152116036 to 152116080 44 + TSS region transcription start site region 40502
Tssr40503 4 152116277 to 152116284 7 + TSS region transcription start site region 40503
Tssr40504 4 152116312 to 152116337 25 + TSS region transcription start site region 40504
Tssr40505 4 152116392 to 152116402 10 + TSS region transcription start site region 40505